TCONS_00011133 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011133
Unique NameTCONS_00011133
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length852

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011133 ID=TCONS_00011133|Name=TCONS_00011133|organism=Clytia hemisphaerica|type=transcript|length=852bp
AATATATCGTTCTTACTGTTTGGCCAATAGAGATTTCAAGTTTATTTCAC
TCAATTTGTTCTCCTCTTAAAATTAGCTATACTGTTTTGTTGtatttttc
agctcaaataaCATTTTAATTGATAAAACCATAACAAAAATACACCTTCC
AAAAAGAACAAGGATAAACAAAAacaacgatggagagcgatcaaaACAAT
GCAGAGGAGGTATCCACGGGTGGCAATGAAAACATGGACTCTCCCCCGCA
GGTCTCCACTGTGGAACCAACACAGGTTGAAGAAACAAATGATAAATCTC
CGCCACAGAGTGCGAGTGCAGAGAACAGTGTAGAAGATCGAAATGATATG
TCTATTGATGAAAGTTCAGTTTTGTCATCTGATGGTGGAACAATGGACCA
ATCTATGGAAAGTCAGAAAACGAATACTTCTATGGAAGAGGTGAGAGATT
CGCCATCAAGCGATACAACTCAACCACAAGGAGATGTTGTTGATGGAGAG
AATGTGGAGAAGAATGATGAACCAGTTAAAGAGTCGTCTAATGTTTCTCA
CACAGAAGATACAACCGAAACCACGGTTGAAAATTCTAATGCGACCACTA
AACTAGAACCTGCCAAACAAGATGACGACGACATCGTCCAAGTTAAGCCA
GACCCGCCAACTGATGATTCGTCTATTGAAACTTCTAATTCCGCGCATGC
GTCCCAACAACAATCGATTTCTGCACCACGTGACCAACAGCAAGATTCGA
TTTATCACCTAAAGTGGTTCGATTGGAAAGGTATACAGACACCCATCATT
ACACAAAACGAGAATGGACCTTGTCCACTATTGGGCATTgctaatgtttt
ga
Run BLAST on NCBI

transcript from alignment at sc0000121:427940..430921-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011133 ID=TCONS_00011133|Name=TCONS_00011133|organism=Clytia hemisphaerica|type=transcript|length=2982bp|location=Sequence derived from alignment at sc0000121:427940..430921- (Clytia hemisphaerica)
AATATATCGTTCTTACTGTTTGGCCAATAGAGATTTCAAGTTTATTTCAC
TCAATTTGTTCTCCTCTTAAAATTAGCTATACTGTTTTGTTGTATTTTTC
AGCTCAAATAACATTTTAATTGATAAAACCATAACAAAAATACACCTTCC
AAAAAGAACAAGGATAAACAAAAACAACGATGGAGAGCGATCAAAACAAT
GCAGAGGAGGTATCCACGGGTGGCAATGAAAACATGGACTCTCCCCCGCA
GGTCTCCACTGTGGAACCAACACAGGTTGAAGAAACAAATGATAAATCTC
CGCCACAGAGTGCGAGTGCAGAGAACAGTGTAGAAGATCGAAATGATATG
TCTATTGATGAAAGTTCAGTTTTGTCATCTGATGGTGGAACAATGGACCA
ATCTATGGAAAGTCAGAAAACGAATACTTCTATGGAAGAGGTGAGAGATT
CGCCATCAAGCGATACAACTCAACCACAAGGAGATGTTGTTGATGGAGAG
AATGTGGAGAAGAATGATGAACCAGTTAAAGAGTCGTCTAATGTAAGTCT
CAATAACTTTTTAAGGCTAAGCTCAAAGTTGTCAAGTCTCATAGAAATAG
CAACAAAACTTTCCTTGTAAATTTGTAAGAGTTTTGACAAGATTAAGTTA
AAAAGTCAAATTGTCCAGCTTTTGCAAATGAATTTGGTCAATTTGGCGAT
GCTGATTTGGAATTTGAATTTTACCAAACTTGATAAACCGCAGTTTTTTT
ACGTACGAATTGCCAGGCAGAACTCAAAGGTATGAAAATCCATAAGTTTT
AGAGGGTTTATTGATATGGGTACCTAATGCACTTGTGATTTTCCTTTTGC
TAAATTCAGGTTTCTCACACAGAAGATACAACCGAAACCACGGTTGAAAA
TTCTAATGCGACCACTAAACTAGAACCTGCCAAACAAGATGACGACGACA
TCGTCCAAGTTAAGCCAGACCCGCCAACTGATGATTCGTCTATTGAAACT
TCTAATTCCGCGCATGCGTCCCAACAACAATCGATTTCTGCACCACGTGA
CCAACAGCAAGATTCGATTTATCACCTAAAGTGGTTCGATTGGAAAGGTA
TTTAAATTTTCTCTTCTGAAGATAATCTCAAGATGAAAAGCTATAACTAC
TTGTGGTGAAGTTTGATTTTTATTTTTGAATTTTATCTTAGCGACGTTGA
TAGTCAGTATTGTCTATGTTTATGCCTAACGGTATATATACGGTCGTAGT
ATGGTATAACATCGGGCTACGGTGTGCAAGGTCATGGCTTCAATCCCTGT
TCGGATCCTACCAAAAACTTCGTACTTAGTACAAAAAAGGAATATGATGC
TTCTCTACCTGAAGCTCAGTAATTAACAGAAGGGTCAAAGGTGAAGCAAT
GCGGGGAGAAAGAGTGGAGCCCTCTACCTACCTTCTGTTAGACAGTAACG
AAAGAGGAGTCTTCGGGTCGCCAACTTACATACTAGCTTAAATAAGAAGA
ATAAGTTAATATAACGGACAAATAACGGCCAACTCTGACATTTTGGACGG
TTATAGGGCTAAAAGTCGAAAACCTGGGGGGCCATTAAGCAATTTTTAGA
TCTTTTGAAGAACTTGAAAATATTGGACGAGAACCTAATTTATTGCCTCG
AACATGAACCAAAGACTCCATGGAGAAATTCAAAAATGGAATTCATTCGT
AGCCAATCAAAAGACAACTACGTAATGTGGAGCCTTTTTTTTCACCAGGT
ATACAGACACCCATCATTACACAAAACGAGAATGGACCTTGTCCACTATT
GGGCATTGCTAATGTTTTGATTTTAGCAAGAAAGATTGAACTGCCACCGA
TGCAACAAATTATCAGTGGCAAACAGTTGATGGAGTACATAGGTCANACT
TGATAAACCGCAGTTTTTTTACGTACGAATTGCCAGGCAGAACTCAAAGG
TATGAAAATCCATAAGTTTTAGAGGGTTTATTGATATGGGTACCTAATGC
ACTTGTGATTTTCCTTTTGCTAAATTCAGGTTTCTCACACAGAAGATACA
ACCGAAACCACGGTTGAAAATTCTAATGCGACCACTAAACTAGAACCTGC
CAAACAAGATGACGACGACATCGTCCAAGTTAAGCCAGACCCGCCAACTG
ATGATTCGTCTATTGAAACTTCTAATTCCGCGCATGCGTCCCAACAACAA
TCGATTTCTGCACCACGTGACCAACAGCAAGATTCGATTTATCACCTAAA
GTGGTTCGATTGGAAAGGTATTTAAATTTTCTCTTCTGAAGATAATCTCA
AGATGAAAAGCTATAACTACTTGTGGTGAAGTTTGATTTTTATTTTTGAA
TTTTATCTTAGCGACGTTGATAGTCAGTATTGTCTATGTTTATGCCTAAC
GGTATATATACGGTCGTAGTATGGTAGAACATCGGGCTACGGTGTGCAAG
GTCATGGCTTCAATCCCTGTTCGGATCCTACCAAAAACTTCGTACTTAGT
ACAAAAAAGGAATATGATGCTTCTCTACCTGAAGCTCAGTAATTAACAGA
AGGGTCAAAGGTGAAGCAATGCGGGGAGAAAGAGTGGAGCCCTCTACCTA
CCTTCTGTTAGACAGTAACGAAAGAGGAGTCTTCGGGTCGCCAACTTACA
TACTAGCTTAAATAAGAAGAATAAGTTAACATAACGGACAAATAACGGCC
AACTCTGACATTTTGGACGGTTATAGGGCTAAAAGTCGAAAACCTGGGGG
GCCATTAAGCAATTTTTAGATCTTTTGAAGAACTTGAAAATATTGGACGA
GAACCTAATTTATTGCCTCGAACATGAACCAAAGACTCCATGGAGAAAAT
GGAATTCATTCGTAGCCAATAAAAGACAACTACGTAATGTGGAGCCTTTT
TTTTCACCAGGTATACAGACACCCATCATTACACAAAACGAGAATGGACC
TTGTCCACTATTGGGCATTGCTAATGTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006230XLOC_006230Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011133-exon-sc0000121-1575043694:430380..430921TCONS_00011133-exon-sc0000121-1575043694:430380..430921Clytia hemisphaericaexon
TCONS_00011133-exon-sc0000121-1575043694:429825..430062TCONS_00011133-exon-sc0000121-1575043694:429825..430062Clytia hemisphaericaexon
TCONS_00011133-exon-sc0000121-1575043694:427940..428011TCONS_00011133-exon-sc0000121-1575043694:427940..428011Clytia hemisphaericaexon
TCONS_00011133-exon-sc0000121-1510915933:430380..430921TCONS_00011133-exon-sc0000121-1510915933:430380..430921Clytia hemisphaericaexon
TCONS_00011133-exon-sc0000121-1510915933:429825..430062TCONS_00011133-exon-sc0000121-1510915933:429825..430062Clytia hemisphaericaexon
TCONS_00011133-exon-sc0000121-1510915933:427940..428011TCONS_00011133-exon-sc0000121-1510915933:427940..428011Clytia hemisphaericaexon
TCONS_00011133-exon-sc0000121-1491911889:430380..430921TCONS_00011133-exon-sc0000121-1491911889:430380..430921Clytia hemisphaericaexon
TCONS_00011133-exon-sc0000121-1491911889:429825..430062TCONS_00011133-exon-sc0000121-1491911889:429825..430062Clytia hemisphaericaexon
TCONS_00011133-exon-sc0000121-1491911889:427940..428011TCONS_00011133-exon-sc0000121-1491911889:427940..428011Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000121supercontigsc0000121:427940..430921 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.07247	2.52348	0	0	0	2.10935	0.253942	0.503466	0.464186	1.04611	0.103853	0	1.59927	1.18459	0	1.06061	0	0	0	0	3.57978	4.47611	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011133 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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