TCONS_00011136 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011136
Unique NameTCONS_00011136
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length895

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011136 ID=TCONS_00011136|Name=TCONS_00011136|organism=Clytia hemisphaerica|type=transcript|length=895bp
CGTAAACTTCCTCGTCCTAAAAGGTATAAATAGTTGGCagaattttcaga
aaataatcatctttcaaattcatcatTTGACAAGAAGAAAACATAGCAAC
ATCAGAATGAAGATTTGGAAAGTTTTATTACTTCTATCTTTCTTGGCTGC
CACAGTTTACTGTGAAGAAAGTGAAGATTttgttgaaaacgaaagtgaaa
gtgaagatTTTGTTGAAGATGAACCTTCAAAAGATGAACCTTTAGATGAC
GAAAATGAAGATGATGAGccttcaaaagatgaaaatgaagattttcagGA
TGAAGAAATCCAAGGCGAAGAAAAAGACGAGGATGAACAAAATGaTCCCA
GTTACAGTCCAAGAACGCACAAGAAATACGTCGGAGGGCCACGAAGAGAA
CACTGCAGATTAATCAACCCTGTTGTGAAAAGCTGCTGGAAGAAAAGAAC
ATGCGTACGACATATGTATGGTAGATGTGCCCGAACCAAGTTGGAAAAAT
TTTGCAGAGTGCAATACGATTTTGAATGCAACGTCTGTAGACCTTTTGTC
ATCAGAACATGTACCAGATATGGATGTAAAGATGGGGCAAGACAAAAAGA
ATGCACCGGCCGTAAAGTTGTCCGAAAGAAGTTTATCCGAAAATTCAAAG
GAGTATCATACATCAACCATAACTTGTACGGTTGAACAAAAGACGAACAA
AGACCCATTGATCTATactgatttttcttgtaaaatatttgcatgcattt
tttttttttacatttgtgGGATAAATCAAATGTTGAAAGCTAACAATATG
TTTCTATCAATTAATTCCTTAAATTGAACTGCAAATATTTTAGCCACTTG
AATAAAATTAAACACATTAAGCCTACTGGCATTTTGCATTCTCAT
Run BLAST on NCBI

protein sequence of TCONS_00011136-protein

>TCONS_00011136-protein ID=TCONS_00011136-protein|Name=TCONS_00011136-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
VNFLVLKGINSWQNFQKIIIFQIHHLTRRKHSNIRMKIWKVLLLLSFLAA
TVYCEESEDFVENESESEDFVEDEPSKDEPLDDENEDDEPSKDENEDFQD
EEIQGEEKDEDEQNDPSYSPRTHKKYVGGPRREHCRLINPVVKSCWKKRT
CVRHMYGRCARTKLEKFCRVQYDFECNVCRPFVIRTCTRYGCKDGARQKE
CTGRKVVRKKFIRKFKGVSYINHNLYG
Run BLAST on NCBI

transcript from alignment at sc0000121:581342..582820-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011136 ID=TCONS_00011136|Name=TCONS_00011136|organism=Clytia hemisphaerica|type=transcript|length=1479bp|location=Sequence derived from alignment at sc0000121:581342..582820- (Clytia hemisphaerica)
CGTAAACTTCCTCGTCCTAAAAGGTATAAATAGTTGGCAGAATTTTCAGA
AAATAATCATCTTTCAAATTCATCATTTGACAAGAAGAAAACATAGCAAC
ATCAGAATGAAGATTTGGAAAGTTTTATTACTTCTATCTTTCTTGGCTGC
CACAGTTTACTGTAAGTATTCGTCATTAAATCACCATAAGTCTAAACTCG
AACCCAGTCTCTTATTTTTTTTATGATTTTGAAAGCGAACACGATTGTAT
CACGTCCATCAGTTGGATCGAATCGTAAAAGTGGTAAATGTAGCTCTGGG
AATGACTGGAGATTACCAAAAGACACGAAAATACAAAGCTTTTTAATGTA
CGCAAAATTATAGATTCTTTTGCTGTTGAAATTTCATAACAATTATTTTT
CTCTCTGCATACAGGTGAAGAAAGTGAAGATTTTGTTGAAAACGAAAGTG
AAAGTGAAGATTTTGTTGAAGATGAACCTTCAAAAGATGAACCTTTAGAT
GACGAAAATGAAGATGATGAGCCTTCAAAAGATGAAAATGAAGATTTTCA
GGATGAAGAAATCCAAGGCGAAGAAAAAGACGAGGATGAACAAAATGGTA
TTTACTCATCTTCCTCTTGTCAACGTGCTTTTTTTGTCAAACCTACAGAT
TAATTTATACAACCCATTTTCCAGAGTTCCAGTTTTCCATTTCCCCTTTT
CCTTTGAGAAGTAGCCCTTTGATACAATGAATACTAAAATAACAAAACAA
TAGTCGCGTTTGCATGTTTTTGCAAAAATTAATTCTCTTGAAAATCTGAA
GGAAATTAGATTGAATAGAGGCTTATCCTAAACTCTGATCACAACAAAAA
TTAAGATTTGTAATTCCAGGCTAAAATAAAACCACTTTAAAGTTGCATAA
TATCACAACATTCCAAATTATTTTTCAGATCCCAGTTACAGTCCAAGAAC
GCACAAGAAATACGTCGGAGGGCCACGAAGAGAACACTGCAGATTAATCA
ACCCTGTTGTGAAAAGCTGCTGGAAGAAAAGAACATGCGTACGACATATG
TATGGTAGATGTGCCCGAACCAAGTTGGAAAAATTTTGCAGAGTGCAATA
CGATTTTGAATGCAACGTCTGTAGACCTTTTGTCATCAGAACATGTACCA
GATATGGATGTAAAGATGGGGCAAGACAAAAAGAATGCACCGGCCGTAAA
GTTGTCCGAAAGAAGTTTATCCGAAAATTCAAAGGAGTATCATACATCAA
CCATAACTTGTACGGTTGAACAAAAGACGAACAAAGACCCATTGATCTAT
ACTGATTTTTCTTGTAAAATATTTGCATGCATTTTTTTTTTTTACATTTG
TGGGATAAATCAAATGTTGAAAGCTAACAATATGTTTCTATCAATTAATT
CCTTAAATTGAACTGCAAATATTTTAGCCACTTGAATAAAATTAAACACA
TTAAGCCTACTGGCATTTTGCATTCTCAT

Coding sequence (CDS) from alignment at sc0000121:581342..582820-

>TCONS_00011136 ID=TCONS_00011136|Name=TCONS_00011136|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at sc0000121:581342..582820- (Clytia hemisphaerica)
GTAAACTTCCTCGTCCTAAAAGGTATAAATAGTTGGCAGAATTTTCAGAA
AATAATCATCTTTCAAATTCATCATTTGACAAGAAGAAAACATAGCAACA
TCAGAATGAAGATTTGGAAAGTTTTATTACTTCTATCTTTCTTGGCTGCC
ACAGTTTACTGTGAAGAAAGTGAAGATTTTGTTGAAAACGAAAGTGAAAG
TGAAGATTTTGTTGAAGATGAACCTTCAAAAGATGAACCTTTAGATGACG
AAAATGAAGATGATGAGCCTTCAAAAGATGAAAATGAAGATTTTCAGGAT
GAAGAAATCCAAGGCGAAGAAAAAGACGAGGATGAACAAAATGATCCCAG
TTACAGTCCAAGAACGCACAAGAAATACGTCGGAGGGCCACGAAGAGAAC
ACTGCAGATTAATCAACCCTGTTGTGAAAAGCTGCTGGAAGAAAAGAACA
TGCGTACGACATATGTATGGTAGATGTGCCCGAACCAAGTTGGAAAAATT
TTGCAGAGTGCAATACGATTTTGAATGCAACGTCTGTAGACCTTTTGTCA
TCAGAACATGTACCAGATATGGATGTAAAGATGGGGCAAGACAAAAAGAA
TGCACCGGCCGTAAAGTTGTCCGAAAGAAGTTTATCCGAAAATTCAAAGG
AGTATCATACATCAACCATAACTTGTACGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006232XLOC_006232Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011136-proteinTCONS_00011136-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011136-exon-sc0000121-1575043694:582660..582820TCONS_00011136-exon-sc0000121-1575043694:582660..582820Clytia hemisphaericaexon
TCONS_00011136-exon-sc0000121-1575043694:582224..582406TCONS_00011136-exon-sc0000121-1575043694:582224..582406Clytia hemisphaericaexon
TCONS_00011136-exon-sc0000121-1575043694:581342..581892TCONS_00011136-exon-sc0000121-1575043694:581342..581892Clytia hemisphaericaexon
TCONS_00011136-exon-sc0000121-1510915933:582660..582820TCONS_00011136-exon-sc0000121-1510915933:582660..582820Clytia hemisphaericaexon
TCONS_00011136-exon-sc0000121-1510915933:582224..582406TCONS_00011136-exon-sc0000121-1510915933:582224..582406Clytia hemisphaericaexon
TCONS_00011136-exon-sc0000121-1510915933:581342..581892TCONS_00011136-exon-sc0000121-1510915933:581342..581892Clytia hemisphaericaexon
TCONS_00011136-exon-sc0000121-1491911889:582660..582820TCONS_00011136-exon-sc0000121-1491911889:582660..582820Clytia hemisphaericaexon
TCONS_00011136-exon-sc0000121-1491911889:582224..582406TCONS_00011136-exon-sc0000121-1491911889:582224..582406Clytia hemisphaericaexon
TCONS_00011136-exon-sc0000121-1491911889:581342..581892TCONS_00011136-exon-sc0000121-1491911889:581342..581892Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000121supercontigsc0000121:581342..582820 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.15515	0.201728	0.117113	0	1.88306	2.31131	12.1677	18.2393	3119.63	2354.69	190.985	1858.23	0.206371	0.785835	0.264299	0.283633	0.504707	0.424009	9.6194	0.690343	0.250014	0.146338	0.296487	0.16173	0.999469	1.18934	0.638226	0.151363	0.0574016	0.0584832
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011136 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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