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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011145 ID=TCONS_00011145|Name=TCONS_00011145|organism=Clytia hemisphaerica|type=transcript|length=1828bp
gtatctaTTTTGTGCAAAGTCCTTGCGGAATCAACTTTTATAGatagcat
ttttttaaatcaggctCATACACATAGGTATTACTATTTTGTGTAAGTCC
AGAAATATCtatcaaaaaaataacaatggATGGataaattttctagattt
ctaAATATATCCTAGCTTTTTCCAAAGAGAAgcaatttcagatttttaag
aTCTATAACCATTACCATTAACTGCAAACAATGCTGTGACTTTTACTCTA
TTCTGTTATAGTTTAAAATTATGATAAGTTATTTATAGTCCGTCTAGTTA
TCATCAAGATATATGAAccacttttaaataaaaatcattACTCAGATGAA
ATTGGAATACACATATACTAAATCTAAAACAGCTAGAACTTTTGTAAATC
TAAAAACCATATTTTCACATAAAAATATGTATATTTTTCCCATATCTTCT
TGGAAGGTCTTGCTTACTTGATCTTATATATTTTTaccaaaccaaatctt
ttgCCTCTCAGAAAAACTAAAATCATTGACttaaatttctagctgaaagt
TACTAAAGCTTCAGTTTCTGGGGAGTCTTTGATATGAATGACGTTTTGAA
AGAACGACCAGAGGCAGCTTGGTAAATACCGTGTGTTTCCATTTCAAGAA
ATGATGCGCAAGTCATCCATCGATGATgcaagaaatcaacaaaaaaaaac
aataaaacatcaaagaaataaGCTGTAAGTGGGAAAAAATGATTGTTTGC
CAATCTTGGGGATTTGCCAAACTCAAAATTAAGTTGGCCCCGGATTGGCG
Aacatgaagaaatagaagaaaaactaaaaattcgccccctggaaaatatt
tagattgttttattttgatcaaTCCCAAATGCTTGTGAAAGCGCCAATTA
TTTTATTATCCAATCACAGCGATATcgattattttattttgtccaatcaa
aaaattgttgTACGATTGTTTAAAAAGAAGTATCCAATCAAATGAAGATA
AAGTGCTGTCATCCAATCAGAAACAGGGATGGCGTCTGCGGCAGTTATAA
AAACagggtttttgaaaaaaaaatctaggaATATCCAGGAAGGAGAAGTT
TTCTAGCATAAGTGTTCCAACTTCAAGAGcatttattcagctttctttta
caaaaaaaattatcaagataatttcttttcattctttcaaaatttgaaaa
ggaaTACTGCAATCAAAAATCGCTAGCCACTTGAGACAGCTATCGGcctg
aatttttttgcattttccccTGTAATAGTTTAGCTTTCAAAACATACTAC
GTTGACTGACTAGAATAAATAACATTAATATTTTAacaagatattttttt
tttctcgcgcTACAGAAAAACACTCTCGCGCCAAACTTCCCCTGCAGATT
TTTTTGTGAAGCACTTTCGTGGCTGGAGGTTTTTgtacaaaaacttcaaa
aaattgaacttcaaaacTACTAGAGGTTGAAAGataagtgacccctcatt
ttttctgaggataagggctttttattaaacttggtttgacattttacaaa
aatgagtttgaaatttcgaatGACCTCCTTATCAAAGACTTTCCGATGTA
CCGAATAACGGAAGCCACTGAGAAGAGACCACATTCGTTTTTATTGCAGA
TTACGATTATAAACATTACATGGGTAATATTTCTTTCAATCAGTCTATGC
TTAAACTCCtctatcaagattacgggatttttattttttttatttttttt
tttttatctatagtatatgaaacacgaacaaatagtacaaaactaagggt
tcctaacctcccgcaaaaggaccaccag Run BLAST on NCBI transcript from alignment at sc0000121:260126..261953 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011145 ID=TCONS_00011145|Name=TCONS_00011145|organism=Clytia hemisphaerica|type=transcript|length=1828bp|location=Sequence derived from alignment at sc0000121:260126..261953 (Clytia hemisphaerica)
ctggtggtccttttgcgggaggttaggaacccttagttttgtactatttg
ttcgtgtttcatatactatagataaaaaaaaaaaaataaaaaaaataaaa
atcccgtaatcttgatagaGGAGTTTAAGCATAGACTGATTGAAAGAAAT
ATTACCCATGTAATGTTTATAATCGTAATCTGCAATAAAAACGAATGTGG
TCTCTTCTCAGTGGCTTCCGTTATTCGGTACATCGGAAAGTCTTTGATAA
GGAGGTCattcgaaatttcaaactcatttttgtaaaatgtcaaaccaagt
ttaataaaaagcccttatcctcagaaaaaatgaggggtcacttatCTTTC
AACCTCTAGTAgttttgaagttcaattttttgaagtttttgtacAAAAAC
CTCCAGCCACGAAAGTGCTTCACAAAAAAATCTGCAGGGGAAGTTTGGCG
CGAGAGTGTTTTTCTGTAgcgcgagaaaaaaaaaatatcttgtTAAAATA
TTAATGTTATTTATTCTAGTCAGTCAACGTAGTATGTTTTGAAAGCTAAA
CTATTACAggggaaaatgcaaaaaaattcaggCCGATAGCTGTCTCAAGT
GGCTAGCGATTTTTGATTGCAGTAttccttttcaaattttgaaagaatga
aaagaaattatcttgataattttttttgtaaaagaaagctgaataaatgC
TCTTGAAGTTGGAACACTTATGCTAGAAAACTTCTCCTTCCTGGATATtc
ctagatttttttttcaaaaaccctGTTTTTATAACTGCCGCAGACGCCAT
CCCTGTTTCTGATTGGATGACAGCACTTTATCTTCATTTGATTGGATACT
TCTTTTTAAACAATCGTAcaacaattttttgattggacaaaataaaataa
tcgATATCGCTGTGATTGGATAATAAAATAATTGGCGCTTTCACAAGCAT
TTGGGAttgatcaaaataaaacaatctaaatattttccagggggcgaatt
tttagtttttcttctatttcttcatgtTCGCCAATCCGGGGCCAACTTAA
TTTTGAGTTTGGCAAATCCCCAAGATTGGCAAACAATCATTTTTTCCCAC
TTACAGCttatttctttgatgttttattgtttttttttgttgatttcttg
cATCATCGATGGATGACTTGCGCATCATTTCTTGAAATGGAAACACACGG
TATTTACCAAGCTGCCTCTGGTCGTTCTTTCAAAACGTCATTCATATCAA
AGACTCCCCAGAAACTGAAGCTTTAGTAactttcagctagaaatttaaGT
CAATGATTTTAGTTTTTCTGAGAGGcaaaagatttggtttggtAAAAATA
TATAAGATCAAGTAAGCAAGACCTTCCAAGAAGATATGGGAAAAATATAC
ATATTTTTATGTGAAAATATGGTTTTTAGATTTACAAAAGTTCTAGCTGT
TTTAGATTTAGTATATGTGTATTCCAATTTCATCTGAGTaatgattttta
tttaaaagtggTTCATATATCTTGATGATAACTAGACGGACTATAAATAA
CTTATCATAATTTTAAACTATAACAGAATAGAGTAAAAGTCACAGCATTG
TTTGCAGTTAATGGTAATGGTTATAGAtcttaaaaatctgaaattgcTTC
TCTTTGGAAAAAGCTAGGATATATTtagaaatctagaaaatttatCCATc
cattgttatttttttgataGATATTTCTGGACTTACACAAAATAGTAATA
CCTATGTGTATGagcctgatttaaaaaaatgctatCTATAAAAGTTGATT
CCGCAAGGACTTTGCACAAAAtagatac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011145-exon-sc0000121-1491911889:260126..261953 | TCONS_00011145-exon-sc0000121-1491911889:260126..261953 | Clytia hemisphaerica | exon |
| TCONS_00011145-exon-sc0000121-1510915933:260126..261953 | TCONS_00011145-exon-sc0000121-1510915933:260126..261953 | Clytia hemisphaerica | exon |
| TCONS_00011145-exon-sc0000121-1575043694:260126..261953 | TCONS_00011145-exon-sc0000121-1575043694:260126..261953 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000121 | supercontig | sc0000121:260126..261953 . |
Blast
The following BLAST results are available for this feature:
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