TCONS_00011146 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011146
Unique NameTCONS_00011146
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length536

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011146 ID=TCONS_00011146|Name=TCONS_00011146|organism=Clytia hemisphaerica|type=transcript|length=536bp
GAAACAGGAGAAGAACGAAAAAGAAGAGGACTTGAAGAaggagaaaagtg
aaaaatcttcaaagagTGATATCGAGGAGGAAGAAAAAGATACACATGCG
CAAGACGTCGATCAAGCCAACAAAATGATTGAAGAAACACGCAAAAAGAC
GGATAACCCAATCGATCGTGACCAGCAAACACAATTGACGATCGAAAACG
AGGCTGCCAAAGATATGATACAACAGGCTGATAAATTAGCCAGTGATAAG
AAAAATGAGACCGGAAGTACGCCGGAAGAGCCCAAAGAAGCCGGAAACGG
AGGAACGCCGGTGACAGACGAATCAGCGGAAAAGAAATCAGGTGAATCGA
GTACCTTAGACAGAATAAGTGCGTTAACGACTTGGTTAAACAAGGCAAGC
ACATTGTTAAAAACGGAACACATCGATTTGAAGAAGAAAAGTAAAGTGGC
AGATAAAAAGACAATTTTAGAGCGGTTTAGAAATTACGCTAAAGAGCACT
CTACAGGCACTGAAACGGCTGCTGCAACGCCAAGAC
Run BLAST on NCBI

protein sequence of TCONS_00011146-protein

>TCONS_00011146-protein ID=TCONS_00011146-protein|Name=TCONS_00011146-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
KQEKNEKEEDLKKEKSEKSSKSDIEEEEKDTHAQDVDQANKMIEETRKKT
DNPIDRDQQTQLTIENEAAKDMIQQADKLASDKKNETGSTPEEPKEAGNG
GTPVTDESAEKKSGESSTLDRISALTTWLNKASTLLKTEHIDLKKKSKVA
DKKTILERFRNYAKEHSTGTETAAATPR
Run BLAST on NCBI

transcript from alignment at sc0000121:347586..348121

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011146 ID=TCONS_00011146|Name=TCONS_00011146|organism=Clytia hemisphaerica|type=transcript|length=536bp|location=Sequence derived from alignment at sc0000121:347586..348121 (Clytia hemisphaerica)
GTCTTGGCGTTGCAGCAGCCGTTTCAGTGCCTGTAGAGTGCTCTTTAGCG
TAATTTCTAAACCGCTCTAAAATTGTCTTTTTATCTGCCACTTTACTTTT
CTTCTTCAAATCGATGTGTTCCGTTTTTAACAATGTGCTTGCCTTGTTTA
ACCAAGTCGTTAACGCACTTATTCTGTCTAAGGTACTCGATTCACCTGAT
TTCTTTTCCGCTGATTCGTCTGTCACCGGCGTTCCTCCGTTTCCGGCTTC
TTTGGGCTCTTCCGGCGTACTTCCGGTCTCATTTTTCTTATCACTGGCTA
ATTTATCAGCCTGTTGTATCATATCTTTGGCAGCCTCGTTTTCGATCGTC
AATTGTGTTTGCTGGTCACGATCGATTGGGTTATCCGTCTTTTTGCGTGT
TTCTTCAATCATTTTGTTGGCTTGATCGACGTCTTGCGCATGTGTATCTT
TTTCTTCCTCCTCGATATCActctttgaagatttttcacttttctcctTC
TTCAAGTCCTCTTCTTTTTCGTTCTTCTCCTGTTTC

Coding sequence (CDS) from alignment at sc0000121:347586..348121

>TCONS_00011146 ID=TCONS_00011146|Name=TCONS_00011146|organism=Clytia hemisphaerica|type=CDS|length=534bp|location=Sequence derived from alignment at sc0000121:347586..348121 (Clytia hemisphaerica)
TCTTGGCGTTGCAGCAGCCGTTTCAGTGCCTGTAGAGTGCTCTTTAGCGT
AATTTCTAAACCGCTCTAAAATTGTCTTTTTATCTGCCACTTTACTTTTC
TTCTTCAAATCGATGTGTTCCGTTTTTAACAATGTGCTTGCCTTGTTTAA
CCAAGTCGTTAACGCACTTATTCTGTCTAAGGTACTCGATTCACCTGATT
TCTTTTCCGCTGATTCGTCTGTCACCGGCGTTCCTCCGTTTCCGGCTTCT
TTGGGCTCTTCCGGCGTACTTCCGGTCTCATTTTTCTTATCACTGGCTAA
TTTATCAGCCTGTTGTATCATATCTTTGGCAGCCTCGTTTTCGATCGTCA
ATTGTGTTTGCTGGTCACGATCGATTGGGTTATCCGTCTTTTTGCGTGTT
TCTTCAATCATTTTGTTGGCTTGATCGACGTCTTGCGCATGTGTATCTTT
TTCTTCCTCCTCGATATCActctttgaagatttttcacttttctcctTCT
TCAAGTCCTCTTCTTTTTCGTTCTTCTCCTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006242XLOC_006242Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011146-proteinTCONS_00011146-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011146-exon-sc0000121-1491911889:347586..348121TCONS_00011146-exon-sc0000121-1491911889:347586..348121Clytia hemisphaericaexon
TCONS_00011146-exon-sc0000121-1510915933:347586..348121TCONS_00011146-exon-sc0000121-1510915933:347586..348121Clytia hemisphaericaexon
TCONS_00011146-exon-sc0000121-1575043694:347586..348121TCONS_00011146-exon-sc0000121-1575043694:347586..348121Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000121supercontigsc0000121:347586..348121 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.108495	0	0.36853	0	0	0.115617	7.39281	8.61868	1.18854	1.24571	8.90349	3.25156	10.3184	11.54	5.17497	16.9912	9.20346	8.09756	0	0.36206	7.34291	7.0609	4.97591	5.42859	11.1826	12.4753	0.892606	0.317538	0.120421	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011146 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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