TCONS_00011149 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011149
Unique NameTCONS_00011149
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length594

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011149 ID=TCONS_00011149|Name=TCONS_00011149|organism=Clytia hemisphaerica|type=transcript|length=594bp
CCAGAGCTGACCTCGAGAACCATGTCTACTTGTTCGACAACCCGAACGAA
CCGAATGAAGAAAATCCACATTACCGAAGTCTTTTCGTTGACCGACCGTC
TTCGGTAAATTTCGGTAACACGTTTGAACGAGGGATAAACGACGAATCTC
GTTTCCATGGCGGCATGAACGAAGATTCTCGGTATTCGGGCCGAGAACAA
GGCCCAATTTCATCAATGTACGAAACAGGAGCAATACATACTTTTGGGCG
ACCGACGAACCAATTCTCGTTGGACGAGAAACAAGACTCGTTTCTCCGAG
ATACAAGCTCCGAGTTAAAAGAAGAGGGTAAACTTGAGAAACTCATGGAA
AGTCCTTTATACGTACAATACCACAAGTACAAAGAACAATTGAGGAAACA
TCAACTAGAGGGTCAAAAAGAAGACCTTTACCAAGCGGCACCAATGGATA
ACCATGCGCCACAGGAAATACAGCAAAACTCACAATTTCAGACGTACGCT
GAACCAATAGCATCGGCTCAACCACAGCCGCAACAAGAAAATCAAGTCCT
AGCAGCACCACATTTGCCTCGTCTAACAGCCTTGGTGGATCCAT
Run BLAST on NCBI

protein sequence of TCONS_00011149-protein

>TCONS_00011149-protein ID=TCONS_00011149-protein|Name=TCONS_00011149-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
RADLENHVYLFDNPNEPNEENPHYRSLFVDRPSSVNFGNTFERGINDESR
FHGGMNEDSRYSGREQGPISSMYETGAIHTFGRPTNQFSLDEKQDSFLRD
TSSELKEEGKLEKLMESPLYVQYHKYKEQLRKHQLEGQKEDLYQAAPMDN
HAPQEIQQNSQFQTYAEPIASAQPQPQQENQVLAAPHLPRLTALVDP
Run BLAST on NCBI

transcript from alignment at sc0000121:355516..356109

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011149 ID=TCONS_00011149|Name=TCONS_00011149|organism=Clytia hemisphaerica|type=transcript|length=594bp|location=Sequence derived from alignment at sc0000121:355516..356109 (Clytia hemisphaerica)
ATGGATCCACCAAGGCTGTTAGACGAGGCAAATGTGGTGCTGCTAGGACT
TGATTTTCTTGTTGCGGCTGTGGTTGAGCCGATGCTATTGGTTCAGCGTA
CGTCTGAAATTGTGAGTTTTGCTGTATTTCCTGTGGCGCATGGTTATCCA
TTGGTGCCGCTTGGTAAAGGTCTTCTTTTTGACCCTCTAGTTGATGTTTC
CTCAATTGTTCTTTGTACTTGTGGTATTGTACGTATAAAGGACTTTCCAT
GAGTTTCTCAAGTTTACCCTCTTCTTTTAACTCGGAGCTTGTATCTCGGA
GAAACGAGTCTTGTTTCTCGTCCAACGAGAATTGGTTCGTCGGTCGCCCA
AAAGTATGTATTGCTCCTGTTTCGTACATTGATGAAATTGGGCCTTGTTC
TCGGCCCGAATACCGAGAATCTTCGTTCATGCCGCCATGGAAACGAGATT
CGTCGTTTATCCCTCGTTCAAACGTGTTACCGAAATTTACCGAAGACGGT
CGGTCAACGAAAAGACTTCGGTAATGTGGATTTTCTTCATTCGGTTCGTT
CGGGTTGTCGAACAAGTAGACATGGTTCTCGAGGTCAGCTCTGG

Coding sequence (CDS) from alignment at sc0000121:355516..356109

>TCONS_00011149 ID=TCONS_00011149|Name=TCONS_00011149|organism=Clytia hemisphaerica|type=CDS|length=591bp|location=Sequence derived from alignment at sc0000121:355516..356109 (Clytia hemisphaerica)
TGGATCCACCAAGGCTGTTAGACGAGGCAAATGTGGTGCTGCTAGGACTT
GATTTTCTTGTTGCGGCTGTGGTTGAGCCGATGCTATTGGTTCAGCGTAC
GTCTGAAATTGTGAGTTTTGCTGTATTTCCTGTGGCGCATGGTTATCCAT
TGGTGCCGCTTGGTAAAGGTCTTCTTTTTGACCCTCTAGTTGATGTTTCC
TCAATTGTTCTTTGTACTTGTGGTATTGTACGTATAAAGGACTTTCCATG
AGTTTCTCAAGTTTACCCTCTTCTTTTAACTCGGAGCTTGTATCTCGGAG
AAACGAGTCTTGTTTCTCGTCCAACGAGAATTGGTTCGTCGGTCGCCCAA
AAGTATGTATTGCTCCTGTTTCGTACATTGATGAAATTGGGCCTTGTTCT
CGGCCCGAATACCGAGAATCTTCGTTCATGCCGCCATGGAAACGAGATTC
GTCGTTTATCCCTCGTTCAAACGTGTTACCGAAATTTACCGAAGACGGTC
GGTCAACGAAAAGACTTCGGTAATGTGGATTTTCTTCATTCGGTTCGTTC
GGGTTGTCGAACAAGTAGACATGGTTCTCGAGGTCAGCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006245XLOC_006245Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011149-proteinTCONS_00011149-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011149-exon-sc0000121-1491911889:355516..356109TCONS_00011149-exon-sc0000121-1491911889:355516..356109Clytia hemisphaericaexon
TCONS_00011149-exon-sc0000121-1510915933:355516..356109TCONS_00011149-exon-sc0000121-1510915933:355516..356109Clytia hemisphaericaexon
TCONS_00011149-exon-sc0000121-1575043694:355516..356109TCONS_00011149-exon-sc0000121-1575043694:355516..356109Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000121supercontigsc0000121:355516..356109 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.104337	0	0	0	4.62046	5.65658	0.621224	0.288557	3.36097	1.22743	6.37375	6.30097	3.13955	11.7361	3.94307	5.6014	0	0	2.94016	2.86822	2.11315	3.84231	6.43093	11.214	0.505424	0	0	0.104206
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011149 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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