TCONS_00011151 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011151
Unique NameTCONS_00011151
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length529

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011151 ID=TCONS_00011151|Name=TCONS_00011151|organism=Clytia hemisphaerica|type=transcript|length=529bp
CGGCTCATCAACGTGCTGGAAGAAGAATGTGTCCCTCAAAGCATCGAGAA
ACTGTTCATCTTCCTTTGTTTCGTCGTGGGGTGTCGACCAATACTCCCAG
TTGATGTTTTTGTAATTGAAATCTCCAACAATGCATTTATGAGTATACTT
ATTATTCATGCCAATTTCCCTAAGTAGTAGGTTGAGTGAAGCATTATTTT
TGGCAGATGTCTCTCTGTTGGTAGGACTTCTATACATGCACCCAAATAAC
AAAGTGTCATTACCTTGTAAATTAATTTCGACCATGCAAGCTTCTTGGAA
TTCAGTTTCGAATCTTATTTCGACAACAAGATCTTTTATCGATTCATGTG
TTAGAATGACGATTCCACGGCCAACTTTATTTAGCGCATTCGTTTCGAAA
GGTGCTGAATATCCCTGAATGGAAAAGTCCTCAATGAGACGTTCTCTCTT
CCAATTTTTCGGTTTTACTTCGCATATTGCTATGATGTGAGGTTTTGATT
TGGTAACTATCTCAACaagttctttcttt
Run BLAST on NCBI

protein sequence of TCONS_00011151-protein

>TCONS_00011151-protein ID=TCONS_00011151-protein|Name=TCONS_00011151-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
KKELVEIVTKSKPHIIAICEVKPKNWKRERLIEDFSIQGYSAPFETNALN
KVGRGIVILTHESIKDLVVEIRFETEFQEACMVEINLQGNDTLLFGCMYR
SPTNRETSAKNNASLNLLLREIGMNNKYTHKCIVGDFNYKNINWEYWSTP
HDETKEDEQFLDALRDTFFFQHVDEP
Run BLAST on NCBI

transcript from alignment at sc0000121:434367..434895

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011151 ID=TCONS_00011151|Name=TCONS_00011151|organism=Clytia hemisphaerica|type=transcript|length=529bp|location=Sequence derived from alignment at sc0000121:434367..434895 (Clytia hemisphaerica)
aaagaaagaacttGTTGAGATAGTTACCAAATCAAAACCTCACATCATAG
CAATATGCGAAGTAAAACCGAAAAATTGGAAGAGAGAACGTCTCATTGAG
GACTTTTCCATTCAGGGATATTCAGCACCTTTCGAAACGAATGCGCTAAA
TAAAGTTGGCCGTGGAATCGTCATTCTAACACATGAATCGATAAAAGATC
TTGTTGTCGAAATAAGATTCGAAACTGAATTCCAAGAAGCTTGCATGGTC
GAAATTAATTTACAAGGTAATGACACTTTGTTATTTGGGTGCATGTATAG
AAGTCCTACCAACAGAGAGACATCTGCCAAAAATAATGCTTCACTCAACC
TACTACTTAGGGAAATTGGCATGAATAATAAGTATACTCATAAATGCATT
GTTGGAGATTTCAATTACAAAAACATCAACTGGGAGTATTGGTCGACACC
CCACGACGAAACAAAGGAAGATGAACAGTTTCTCGATGCTTTGAGGGACA
CATTCTTCTTCCAGCACGTTGATGAGCCG

Coding sequence (CDS) from alignment at sc0000121:434367..434895

>TCONS_00011151 ID=TCONS_00011151|Name=TCONS_00011151|organism=Clytia hemisphaerica|type=CDS|length=528bp|location=Sequence derived from alignment at sc0000121:434367..434895 (Clytia hemisphaerica)
aagaaagaacttGTTGAGATAGTTACCAAATCAAAACCTCACATCATAGC
AATATGCGAAGTAAAACCGAAAAATTGGAAGAGAGAACGTCTCATTGAGG
ACTTTTCCATTCAGGGATATTCAGCACCTTTCGAAACGAATGCGCTAAAT
AAAGTTGGCCGTGGAATCGTCATTCTAACACATGAATCGATAAAAGATCT
TGTTGTCGAAATAAGATTCGAAACTGAATTCCAAGAAGCTTGCATGGTCG
AAATTAATTTACAAGGTAATGACACTTTGTTATTTGGGTGCATGTATAGA
AGTCCTACCAACAGAGAGACATCTGCCAAAAATAATGCTTCACTCAACCT
ACTACTTAGGGAAATTGGCATGAATAATAAGTATACTCATAAATGCATTG
TTGGAGATTTCAATTACAAAAACATCAACTGGGAGTATTGGTCGACACCC
CACGACGAAACAAAGGAAGATGAACAGTTTCTCGATGCTTTGAGGGACAC
ATTCTTCTTCCAGCACGTTGATGAGCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006247XLOC_006247Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011151-exon-sc0000121-1491911889:434367..434895TCONS_00011151-exon-sc0000121-1491911889:434367..434895Clytia hemisphaericaexon
TCONS_00011151-exon-sc0000121-1510915933:434367..434895TCONS_00011151-exon-sc0000121-1510915933:434367..434895Clytia hemisphaericaexon
TCONS_00011151-exon-sc0000121-1575043694:434367..434895TCONS_00011151-exon-sc0000121-1575043694:434367..434895Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011151-proteinTCONS_00011151-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000121supercontigsc0000121:434367..434895 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.782985	1.51321	2.14529	2.47924	0.35908	0.129403	0.202912	0.427054	0.496056	0.440253	0.598188	0.707126	0.506096	0.0934852	0.254184	0.0870503	0	0.118319	0	0.163288	0.508736	0.76692	0.544185	0.621984	0.135018	0	0.270452	0.162242	0.565973	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011151 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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