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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011152 ID=TCONS_00011152|Name=TCONS_00011152|organism=Clytia hemisphaerica|type=transcript|length=836bp
TTTACATCTTCTCGACAATGTTCCGTTTACCTTTACATATTGATAACGGT
CAATGAGAAAGGACTGTATCCAGTTGAGCTCCGATCCTCTGACTCCATAA
GCATTCAGCTTTTTCAGCAGTCTGCGGTGTGGTACGGTGTCAAAAGCCTT
CACGAAGTCAAAATAAATCACATCAActactttattatttgatatCGAAT
TCGCACATTTATCAAGGTATGTAAGTAATTGTGTTACCGTTGATCTCTTT
GGCATGAACCCATGTTGTTTACTAGATAATAGTTTTTCATCTACCAGATG
TTTCATAATTTGGTCCCTTAGCGCTCTTTCCATCAGTCTGCAAGCGATCG
ATGTAAGACTgactggtctgtaattttcagCTAGATTTTTGCTCCCTTTT
TTATATATTGGTGACACATGTGCAACCTTCCATCTGTCTGGCAGAGTACT
TTCATCAAATGGTTTAGTCATGATTGTGTGGAGCGGGACAGCTATGTAGT
CCGCTAGCTCCTTCAACATAATTGGATGAATTTCGTCCGGACCAATTGAC
TTATTTGGGGTTGAGACCTTTAAGTTCTTTTTTGACCATTTCCAAAGTGA
GATTAAACTCTACTTTAGAATCGGTACGTGATTGAAACTCCGGAAGACTA
TCATTGGGCTCTTTCGTGAATACACTACAGAACTGATCCTGTAGTATATC
AGCTTTGTCTTCGTCCGTATAGTGAAGAGAAGATTTATCCTTTGGGTTGC
GCAGGAGAGGCGAGATCCCAGATTTTGTTTTCATGGAGTTACgaacatgt
ctccaaaatcttttttgactCCTCTTTGCTTGCCCA Run BLAST on NCBI protein sequence of TCONS_00011152-protein >TCONS_00011152-protein ID=TCONS_00011152-protein|Name=TCONS_00011152-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
MLKELADYIAVPLHTIMTKPFDESTLPDRWKVAHVSPIYKKGSKNLAENY
RPVSLTSIACRLMERALRDQIMKHLVDEKLLSSKQHGFMPKRSTVTQLLT
YLDKCANSISNNKVVDVIYFDFVKAFDTVPHRRLLKKLNAYGVRGSELNW
IQSFLIDRYQYVKVNGTLSRRCK Run BLAST on NCBI transcript from alignment at sc0000121:435062..435897 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011152 ID=TCONS_00011152|Name=TCONS_00011152|organism=Clytia hemisphaerica|type=transcript|length=836bp|location=Sequence derived from alignment at sc0000121:435062..435897 (Clytia hemisphaerica)
TGGGCAAGCAAAGAGGagtcaaaaaagattttggagacatgttcGTAACT
CCATGAAAACAAAATCTGGGATCTCGCCTCTCCTGCGCAACCCAAAGGAT
AAATCTTCTCTTCACTATACGGACGAAGACAAAGCTGATATACTACAGGA
TCAGTTCTGTAGTGTATTCACGAAAGAGCCCAATGATAGTCTTCCGGAGT
TTCAATCACGTACCGATTCTAAAGTAGAGTTTAATCTCACTTTGGAAATG
GTCAAAAAAGAACTTAAAGGTCTCAACCCCAAATAAGTCAATTGGTCCGG
ACGAAATTCATCCAATTATGTTGAAGGAGCTAGCGGACTACATAGCTGTC
CCGCTCCACACAATCATGACTAAACCATTTGATGAAAGTACTCTGCCAGA
CAGATGGAAGGTTGCACATGTGTCACCAATATATAAAAAAGGGAGCAAAA
ATCTAGctgaaaattacagaccagtcAGTCTTACATCGATCGCTTGCAGA
CTGATGGAAAGAGCGCTAAGGGACCAAATTATGAAACATCTGGTAGATGA
AAAACTATTATCTAGTAAACAACATGGGTTCATGCCAAAGAGATCAACGG
TAACACAATTACTTACATACCTTGATAAATGTGCGAATTCGatatcaaat
aataaagtagTTGATGTGATTTATTTTGACTTCGTGAAGGCTTTTGACAC
CGTACCACACCGCAGACTGCTGAAAAAGCTGAATGCTTATGGAGTCAGAG
GATCGGAGCTCAACTGGATACAGTCCTTTCTCATTGACCGTTATCAATAT
GTAAAGGTAAACGGAACATTGTCGAGAAGATGTAAA Coding sequence (CDS) from alignment at sc0000121:435062..435897 >TCONS_00011152 ID=TCONS_00011152|Name=TCONS_00011152|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at sc0000121:435062..435897 (Clytia hemisphaerica)
ATGTTGAAGGAGCTAGCGGACTACATAGCTGTCCCGCTCCACACAATCAT
GACTAAACCATTTGATGAAAGTACTCTGCCAGACAGATGGAAGGTTGCAC
ATGTGTCACCAATATATAAAAAAGGGAGCAAAAATCTAGctgaaaattac
agaccagtcAGTCTTACATCGATCGCTTGCAGACTGATGGAAAGAGCGCT
AAGGGACCAAATTATGAAACATCTGGTAGATGAAAAACTATTATCTAGTA
AACAACATGGGTTCATGCCAAAGAGATCAACGGTAACACAATTACTTACA
TACCTTGATAAATGTGCGAATTCGatatcaaataataaagtagTTGATGT
GATTTATTTTGACTTCGTGAAGGCTTTTGACACCGTACCACACCGCAGAC
TGCTGAAAAAGCTGAATGCTTATGGAGTCAGAGGATCGGAGCTCAACTGG
ATACAGTCCTTTCTCATTGACCGTTATCAATATGTAAAGGTAAACGGAAC
ATTGTCGAGAAGATGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011152-exon-sc0000121-1491911889:435062..435897 | TCONS_00011152-exon-sc0000121-1491911889:435062..435897 | Clytia hemisphaerica | exon |
| TCONS_00011152-exon-sc0000121-1510915933:435062..435897 | TCONS_00011152-exon-sc0000121-1510915933:435062..435897 | Clytia hemisphaerica | exon |
| TCONS_00011152-exon-sc0000121-1575043694:435062..435897 | TCONS_00011152-exon-sc0000121-1575043694:435062..435897 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000121 | supercontig | sc0000121:435062..435897 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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