TCONS_00011158 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011158
Unique NameTCONS_00011158
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length717

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011158 ID=TCONS_00011158|Name=TCONS_00011158|organism=Clytia hemisphaerica|type=transcript|length=717bp
CACCATAAAAGTGAGAATGAAAAGAGACTTAACACCGTGGTCAAGGACTT
ACAGGCAAAATGTCAGGAATACCTAAAAGACAAAAATCAAGTAGCTGATC
TAATCCAGAGCCAATTTTCCGTCCTGGAAAAGATTTCGAAAGTTCAAGTG
gctaaagaaccaaaaagttttACCGACGCTGCGAAAGTAAATAGTTCGTT
GAACCTAAACAACATGAAGCAGTTACTCAGAAGGGAGAAAGCCGAAGAAC
AAATCGAAGACCAAAGAAAGCTGTCAATAGACGCAAACATCATCATCCAC
GGGGtgcgtgaaaaagaaaatgaagaagatatcGATTTCGTAAACGAACT
TTTGAACGACGTCAACGTAAAAACTCAACCAACCTTCGTCTCTCGAGTTG
GAAAACAATCAAATTGTGTGCGTCCAATCAAAGTTGCCTTCAAAGACAGC
CATATAAAGTACCGCTTCATGAAGAAGTTGACTGAACTAAGACAGCACGA
GAAGTACGTAAAATTGAGCATCACCGACGATTTAACGAAAATGGAGAGAG
AGCAAATCAAAGAATGGAAAAGAAGAGCAGACGAGATGAATAAAGCCAAG
TCAAATGAAGATTTTAATTGGAGGGTGCGGGGAAGTCCTCGTGACAAACT
Gtacctaaaaaagattttttgtacaagatcggtttagaggccctcgtgtg
cctggactgtaatTCTT
Run BLAST on NCBI

protein sequence of TCONS_00011158-protein

>TCONS_00011158-protein ID=TCONS_00011158-protein|Name=TCONS_00011158-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
HHKSENEKRLNTVVKDLQAKCQEYLKDKNQVADLIQSQFSVLEKISKVQV
AKEPKSFTDAAKVNSSLNLNNMKQLLRREKAEEQIEDQRKLSIDANIIIH
GVREKENEEDIDFVNELLNDVNVKTQPTFVSRVGKQSNCVRPIKVAFKDS
HIKYRFMKKLTELRQHEKYVKLSITDDLTKMEREQIKEWKRRADEMNKAK
SNEDFNWRVRGSPRDKLYLKKIFCTRSV
Run BLAST on NCBI

transcript from alignment at sc0000121:579478..580194

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011158 ID=TCONS_00011158|Name=TCONS_00011158|organism=Clytia hemisphaerica|type=transcript|length=717bp|location=Sequence derived from alignment at sc0000121:579478..580194 (Clytia hemisphaerica)
AAGAattacagtccaggcacacgagggcctctaaaccgatcttgtacaaa
aaatcttttttaggtaCAGTTTGTCACGAGGACTTCCCCGCACCCTCCAA
TTAAAATCTTCATTTGACTTGGCTTTATTCATCTCGTCTGCTCTTCTTTT
CCATTCTTTGATTTGCTCTCTCTCCATTTTCGTTAAATCGTCGGTGATGC
TCAATTTTACGTACTTCTCGTGCTGTCTTAGTTCAGTCAACTTCTTCATG
AAGCGGTACTTTATATGGCTGTCTTTGAAGGCAACTTTGATTGGACGCAC
ACAATTTGATTGTTTTCCAACTCGAGAGACGAAGGTTGGTTGAGTTTTTA
CGTTGACGTCGTTCAAAAGTTCGTTTACGAAATCgatatcttcttcattt
tctttttcacgcaCCCCGTGGATGATGATGTTTGCGTCTATTGACAGCTT
TCTTTGGTCTTCGATTTGTTCTTCGGCTTTCTCCCTTCTGAGTAACTGCT
TCATGTTGTTTAGGTTCAACGAACTATTTACTTTCGCAGCGTCGGTaaaa
ctttttggttctttagcCACTTGAACTTTCGAAATCTTTTCCAGGACGGA
AAATTGGCTCTGGATTAGATCAGCTACTTGATTTTTGTCTTTTAGGTATT
CCTGACATTTTGCCTGTAAGTCCTTGACCACGGTGTTAAGTCTCTTTTCA
TTCTCACTTTTATGGTG

Coding sequence (CDS) from alignment at sc0000121:579478..580194

>TCONS_00011158 ID=TCONS_00011158|Name=TCONS_00011158|organism=Clytia hemisphaerica|type=CDS|length=687bp|location=Sequence derived from alignment at sc0000121:579478..580194 (Clytia hemisphaerica)
ctaaaccgatcttgtacaaaaaatcttttttaggtaCAGTTTGTCACGAG
GACTTCCCCGCACCCTCCAATTAAAATCTTCATTTGACTTGGCTTTATTC
ATCTCGTCTGCTCTTCTTTTCCATTCTTTGATTTGCTCTCTCTCCATTTT
CGTTAAATCGTCGGTGATGCTCAATTTTACGTACTTCTCGTGCTGTCTTA
GTTCAGTCAACTTCTTCATGAAGCGGTACTTTATATGGCTGTCTTTGAAG
GCAACTTTGATTGGACGCACACAATTTGATTGTTTTCCAACTCGAGAGAC
GAAGGTTGGTTGAGTTTTTACGTTGACGTCGTTCAAAAGTTCGTTTACGA
AATCgatatcttcttcattttctttttcacgcaCCCCGTGGATGATGATG
TTTGCGTCTATTGACAGCTTTCTTTGGTCTTCGATTTGTTCTTCGGCTTT
CTCCCTTCTGAGTAACTGCTTCATGTTGTTTAGGTTCAACGAACTATTTA
CTTTCGCAGCGTCGGTaaaactttttggttctttagcCACTTGAACTTTC
GAAATCTTTTCCAGGACGGAAAATTGGCTCTGGATTAGATCAGCTACTTG
ATTTTTGTCTTTTAGGTATTCCTGACATTTTGCCTGTAAGTCCTTGACCA
CGGTGTTAAGTCTCTTTTCATTCTCACTTTTATGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006254XLOC_006254Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011158-exon-sc0000121-1491911889:579478..580194TCONS_00011158-exon-sc0000121-1491911889:579478..580194Clytia hemisphaericaexon
TCONS_00011158-exon-sc0000121-1510915933:579478..580194TCONS_00011158-exon-sc0000121-1510915933:579478..580194Clytia hemisphaericaexon
TCONS_00011158-exon-sc0000121-1575043694:579478..580194TCONS_00011158-exon-sc0000121-1575043694:579478..580194Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011158-proteinTCONS_00011158-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000121supercontigsc0000121:579478..580194 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.84706	2.97438	7.39099	5.21175	1.28958	1.22143	0.91026	1.49498	1.86145	1.55533	1.41349	2.00056	2.00918	1.02623	2.30422	2.56077	1.91272	1.5752	0.859076	1.59642	1.35597	2.32956	0.878617	1.06558	1.0796	1.20188	3.39669	0.804713	1.73334	1.17594
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011158 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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