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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011172 ID=TCONS_00011172|Name=TCONS_00011172|organism=Clytia hemisphaerica|type=transcript|length=6330bpRun BLAST on NCBI protein sequence of TCONS_00011172-protein >TCONS_00011172-protein ID=TCONS_00011172-protein|Name=TCONS_00011172-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1120bp MVTSCTQPTRRMERGQCMTLVDHDKIKAFVYEFAVRGLLPHIEKLMRNLSRun BLAST on NCBI transcript from alignment at sc0000122:79501..119329+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011172 ID=TCONS_00011172|Name=TCONS_00011172|organism=Clytia hemisphaerica|type=transcript|length=39829bp|location=Sequence derived from alignment at sc0000122:79501..119329+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000122:79501..119329+ >TCONS_00011172 ID=TCONS_00011172|Name=TCONS_00011172|organism=Clytia hemisphaerica|type=CDS|length=3363bp|location=Sequence derived from alignment at sc0000122:79501..119329+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011172 vs. Swiss-Prot (Human)
Match: TPPC8 (Trafficking protein particle complex subunit 8 OS=Homo sapiens GN=TRAPPC8 PE=1 SV=2) HSP 1 Score: 533.487 bits (1373), Expect = 2.988e-159 Identity = 356/1047 (34.00%), Postives = 550/1047 (52.53%), Query Frame = 2
Query: 1415 GQCMTLVDHDKIKAFVYEFAVRGLLPHIEKLMRNLSEQILNRRGLHKSLFNVTKKWFGGNKTQGGTIGXXXXXAN--YQRDSVELQHRRLGDLSFLVQHYDLAYNSYHSAKREFNNDHAWLYFAGSLEMAAISAFLTPNN-KNYPVHYFEACISTYLNTCRLPEYAARACLLSTETFKSRNRNLDAANEFIKLTNEDPDLRSALLLEQAAHCYLNNKPPMVRKYAFHMILAGHRYSKSAQRKHTLRCYINALQIYEDKGWHLAEDHVNFVIGRQSFNLGNLDDAHIALKCLLLYESQQPPSQQASHLREFLAVFKQYLETKKNNSKKFQLPELPLPNIKAQLTRCLTCYKGPITPPTPATNSPSINKRTRTVHAGNYTFQKNYSKEYTERWSQMEQKIVQHVTGG-LPYPFKPFTPCLSSSTENKNPATVACKESFAFEIVFRXXXXXXXXXXXXXXXWQFTPDKTNDEEPEPFDNKENDCPETIEAETIQNFFLKPLEEKPACLRVCIKQPGQIQILGVKYTLSSVGVTSSLEETSKQELDEHQQAALNTVGVYGIQ-MSIQGARLNNTKQQKAMKTYDIDKRLELQIVPSLPFLDVTMSNLPVTLLCGETQTSQFTFKNAGQTPMKNLHLICSCPQSFAFGSRKS-------GGDNNKQPSKYPVAEKGDS-----AQPSKTNIANLNNTFNGVLKIPVANDALQPGEEVTLDVAVYGALSPGVHEIYFLFYYEPLETVKKVPYRLLQQMIRIQXXXXXXXXXXMQKSFGKETKGSSDTSTTQDHLFTMNIENRAQGSSTLRCVEFSLKQITCYSKLWNPKTLVKLPK-ESFFLRPGETCSLHLKASTCQLDKESFFLRPGETCSLHLKASTCQLDKDIDQILVSRIQLDD-------QDVEMSDQAMDLFLQSSYNKDAI-------DNSFAMILHWETFYIDESFSRNVIRGQSYVVC----TQPISHWIKQQLLINNTEKKLVAKQDTSTIPQVSNSLILSPVDGINLSYHYNALYKHDFSQSSLCKIPVTITCCNMTSQDV 4447
G C+TL DHD+I+ F+ EF RGLLPHIEK +R L++Q+++R+GL +SLF+ TKKWF G+K +I +++ Y ++ ELQ R++ DL FLVQHYDLAY+ YH+AK++F ND A LY AG+LEMAA+SAFL P + YP HY + I TY + C+ A R LLS E KS+++ +AA I+LT+ED DLRSALLLEQAAHC++N K PMVRKYAFHMILAGHR+SK+ Q+KH LRCY A+Q+Y+ KGW LAEDH+NF IGRQS+ L LD+A A + +L+ ES+Q +QQ + LRE+L V+K + + LP+LPLP I + TR + P+ ++ H + + Y E +++W ++E+++V V G +P F P CL+S ++N +E E+ FRNPLK+ L L +L+LLW+F P + ++ E PE I AE I F + E K A L++ G++ ILGV Y L ++ + +++ + +L ++ V G Q + IQG RLNNTK++K Y D+RL+ I +P L+V + P LLCGE + + F N + P+ L ++ P+ F FG + N K V + + S + + V+ +P+ + L PG V L + + G GVHEI FLFYYE ++ K+ +R+L+ I T +L++ ++ +S E ++ + L +++EN + ++ EF + Q++ SK W + V L + + L E KA C +KE + E K + + +QI+ S D +++ + + + +DA+ + +++ W+ + +++S + ++ GQ +V+ + S+ KQ+ E +L+ I S + I S HY + H F Q SLC +PVT+ N + DV
Sbjct: 337 GACLTLTDHDRIRQFIQEFTFRGLLPHIEKTIRQLNDQLISRKGLSRSLFSATKKWFSGSKVPEKSINDLKNTSGLLYPPEAPELQIRKMADLCFLVQHYDLAYSCYHTAKKDFLNDQAMLYAAGALEMAAVSAFLQPGAPRPYPAHYMDTAIQTYRDICKNMVLAERCVLLSAELLKSQSKYSEAAALLIRLTSEDSDLRSALLLEQAAHCFINMKSPMVRKYAFHMILAGHRFSKAGQKKHALRCYCQAMQVYKGKGWSLAEDHINFTIGRQSYTLRQLDNAVSAFRHILINESKQSAAQQGAFLREYLYVYKNVSQLSPDGP----LPQLPLPYINSSATRVFFGHD----------RRPADGEKQAATHV---SLDQEYDSESSQQWRELEEQVVSVVNKGVIPSNFHPTQYCLNSYSDNSRFPLAVVEEPITVEVAFRNPLKVLLLLTDLSLLWKFHPKDFSGKDNEEVKQLVTSEPEMIGAEVISEFLINGEESKVARLKLFPHHIGELHILGVVYNLGTIQGSMTVDGIGALPGCHTGKYSL-SMSVRGKQDLEIQGPRLNNTKEEKTSVKYGPDRRLDPIITEEMPLLEVFFIHFPTGLLCGEIRKAYVEFVNVSKCPLTGLKVVSKRPEFFTFGGNTAVLTPLSPSASENCSAYKTVVTDATSVCTALISSASSVDFGIGTGSQPEVIPVPLPDTVLLPGASVQLPMWLRGPDEEGVHEINFLFYYESVKKQPKIRHRILRHTAIICTSRSLNVRATVCRSNSLE----NEEGRGGNMLVFVDVENTNTSEAGVK--EFHIVQVSSSSKHWKLQKSVNLSENKDTKLASREKGKFCFKAIRC--EKEEAATQSSE------KYTFADIIFGNEQIISSASPCADFFYRSLSSELKKPQAHLPVHTEKQSTEDAVRLIQKCSEVDLNIVILWKAYVVEDS-KQLILEGQHHVILRTIGKEAFSYPQKQE----PPEMELLKFFRPENITVSSRPSVEQLSSLIKTSLHYPESFNHPFHQKSLCLVPVTLLLSNCSKADV 1346 HSP 2 Score: 188.734 bits (478), Expect = 8.871e-48 Identity = 115/305 (37.70%), Postives = 172/305 (56.39%), Query Frame = 1
Query: 172 MARCAQTPQEFINSVFPAVVGALASEDAEAICQKNNLSFVELVRPFCQLDSDAQIRDPVNPSVIVPVKKWKIRVIDIQSSRPPPALINKILGEVVSKSVSQVDLRSGLTI----EEQSSARTPWFEAYRDCFFQLVQPLEHEFMRDYLACILVVSTKHPDPMHAFAALSARQNSIQNSAERQKASY-HFFDQSTFKYYVLLHDVSEGDDSKAEKTFLSMKSVYGNHTCFLLQINSRKKMLPTATNATTSEPWSAYAYPFDDGTLNMEETDFDDTKDIPGPVVNQKDMDQKEQKILSELESIDKEI 1071
MA+C Q+ QE I F V AL S++AE + + N+LSF EL++PF +L S+ +RDP N ++ K KI V +I + P P I K+L +VVS S L + + + SA TPWFE+YR+ F Q + L+HEF+ YLAC+LV S+ +P+ F+ LS Q+ IQ++++ SY +F +T KYYVLLHDVS GD+ +AE + MK YG C+LL+INSR A++ +PWS Y ++ +E+ +D P + + K+ D L L+ +D E+
Sbjct: 1 MAQCVQSVQELIPDSFVPCVAALCSDEAERLTRLNHLSFAELLKPFSRLTSEVHMRDPNNQLHVI--KNLKIAVSNIVTQPPQPGAIRKLLNDVVSGSQPAEGLVANVITAGDYDLNISATTPWFESYRETFLQSMPALDHEFLNHYLACMLVASSSEAEPVEQFSKLSQEQHRIQHNSDY---SYPKWFIPNTLKYYVLLHDVSAGDEQRAESIYEEMKQKYGTQGCYLLKINSRTS--NRASDEQIPDPWSQY---LQKNSIQNQES----YEDGPCTITSNKNSDNN----LLSLDGLDNEV 287 The following BLAST results are available for this feature:
BLAST of TCONS_00011172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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