TCONS_00011197 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00011197
Unique Name	TCONS_00011197
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2625

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000122:340662..351793+
coding sequence from alignment at sc0000122:340662..351793+

transcript sequence

>TCONS_00011197 ID=TCONS_00011197|Name=TCONS_00011197|organism=Clytia hemisphaerica|type=transcript|length=2625bp
GTTCAAGATGTCGAAAGTGTAGATAAAAGGCGGCTTTTTCATCTAGGATC
ACTCCAAGCAAATCACGCACGTTGCAAGACTTTGCTGACTGACTGGCGAG
GAACAAAGAATTCAAGTACATTCTTGAAATTGGAAAACAACAAACTTATT
ACAATGGCTGAATTATATCACTGCCCAGACCAaaagaaaatccaaaactt
gaaaGATGTTGCCAACAAACTTCGAATTTTGAGCATCAAATGTACAAATG
CTGCAGGATCTGGCCATCCCACATCATGCTGCTCGATGGCTGAGCTCACA
TCTGTTCTTTTCTTCCACACCATGAAGTACAAAGtaagCGATCCAAGAGA
TGCATCCAGTGATCGATTTGTCTTATCTAAGGGTCATTCTGCCCCAATCC
TCTATGCTGCTTGGTGTATGGCTGGTCTCTTCAGTGAAGACGAACTTATG
CAATTACGAAAACttggaaatgatttggaagGCCATCCTACACCAAGATT
GAACTTTGTTGATGTGGCCACTGGATCTTTGGGTCAAGGTCTAAGTTGCT
CTGCTGGTATGGCATACACTGGAAAATACTTGGACAAAGGAAGCTACCGT
GTTTTCTGTTTGATGGGTGATGGTGAAAGTGCTGAAGGTTCTGTCATGGA
GGCTGCCAACTTTGCTGGGTACTACAAATTGGACAACTTGGTTGGTATCA
TTGACATTAATCGTTTGGGACAAAGTGACCCAACCTCATTACAACACGAA
ATGGATGTTTACCAAAAGAGATGGGAAAGCTACGGGTGGAATGCCATTGT
TGTTGATGGACATGATATTGAAGCAATTTGCCGTGCTTACTTTGATGCTG
AACAAGCAAATGGGCGACCAACTATGATCTTGGCAAAGACATACAAAGGA
AAAGGTGTTCCTGGCGTTGAGAACGAGATGAACTGGCATGGAAAAGCTCT
CGGTGCCAAAGCTGATGATGCTATCGCTGCTATTGAAGCTCAAATGGTCG
ACAAGAATGTATCTGGCGAGAAATTGAACACTCAAGTGGTTGTGGATGAC
GTCAAGCCCGTTGACCCGTCAGCCATCGTGCTGTCAGAGAAACCATCATA
CGCAGCTGATGCCAAAGAGGCTACCCGAAAAGCTTATGGTCTCGCATTGG
CTAAATTGGGTCGATCTTCAGACCGTGTAGTTGCCCTTGATGGTGATACC
AAGAACTCGACTTTCGCCATCACCTTCCAAAAAGAATTCCCAGACCGTTT
CGTCGAATGCTTCATTGCTGAACAAAACATGTTGGGCGTCGGTATGGGAT
GCGCCACAAGAGACCGCACGGTGGCGTTTGCAAGTGCCTTTGCCTGCTTC
TTGTCCCGTGGGTACGATCAAATCCGTATGGGTGCTATCTCTCAAACTAA
ATTGAAAATGGCTGGCTCACACGTTGGTGTCTCTATTGGTGAAGACGGTC
CATCTCAAATGGCTTTGGAAGATCTCGCCATGTTCCGCGCCATCAACAAC
TGCACTGTTTTCTATCCCTCCGATGCCGTCTCGTGCGAACGCGCGGTCGA
ATTGTGCGCCAACACACCCAACATGTGTTACATTAGAACTAGCCGACCAG
CTACTTCTATCTTGTACGGTGCCGATGAGGTCTTCGAAGCCGGCAAAGGA
AAGGTCGTTAAACAAACAGCTTCAGATTTCTGTCTCTTGATTGGTGCTGG
TGTAACACTTCACGAATGTTTGAAAGCACACGAAACTTTGAAAGCTGAAG
GTATCAATACTCGTGTCTTCGATCCTTTCTGTATCAAACCATTGGACGTC
CAAGGAATCATCGCAAATGCTAAAGCTTGCAATGGAAATATTGTCACCAT
TGAAGACCATTATCCAGAAGGTGGTCTTGGTGAAGCTGTTCTGTCCGCTG
TCGCCATGGAAACTGGAATTCGCGTCCAACGATTGGCTGTCACTGGTTTG
CCACGCTCAGGTCCATCCGCTGCTTTGATGGAAATGTTCGGAGTTTCTGC
CAAACAAGTCGTCGAAGCTGTCAAGAAATTCTAATAAGTTGTTTGGCTGT
CTCGCGTAGAGATTAATGTGACCGCGCTTTCCGAGAGCGTTTCCTACGAG
ATGAGATATGGGGATATGTACTGAACTAAATGAGATAGATATTATATAAA
GCTGTATTTAGCGTAGATGTGAACTGTCTTTTCCCTGTGTATCGTTCCAA
TGAATAAATGTTCTGGGAAAATTGACAAACGGGGCAAAAGACACGGTATT
CTACGTTGAATAGCATTTAACTACCTATGAATAATCTTAAATTGTCAAAA
ACGATTTAGTTCAAATTTACATAGTCTGATAAAATGGACTTCGTTCAGTT
TTATGTTACTTTTTGcgtgattttattttttcgacttttatttatatttt
ggtatttttgctTGATCTTGTAAAACGGTAAATTggcttttgtaagattt
tttgtGATCGAGGATGTAATTTTTTATGCTTGTTTTACTTTTCTGTGAAA
ACAGAACGGAAAGAAAAAGCAATAGATGATGTTATAGAATACTTTGTATC
CATTCATTCATTAATATGCTTGATAGCAATGATAACTTACTATCAACCTC
AATTGAAAATGTTGTATCGTTGGAA

Run BLAST on NCBI

protein sequence of TCONS_00011197-protein

>TCONS_00011197-protein ID=TCONS_00011197-protein|Name=TCONS_00011197-protein|organism=Clytia hemisphaerica|type=polypeptide|length=677bp
VQDVESVDKRRLFHLGSLQANHARCKTLLTDWRGTKNSSTFLKLENNKLI
TMAELYHCPDQKKIQNLKDVANKLRILSIKCTNAAGSGHPTSCCSMAELT
SVLFFHTMKYKVSDPRDASSDRFVLSKGHSAPILYAAWCMAGLFSEDELM
QLRKLGNDLEGHPTPRLNFVDVATGSLGQGLSCSAGMAYTGKYLDKGSYR
VFCLMGDGESAEGSVMEAANFAGYYKLDNLVGIIDINRLGQSDPTSLQHE
MDVYQKRWESYGWNAIVVDGHDIEAICRAYFDAEQANGRPTMILAKTYKG
KGVPGVENEMNWHGKALGAKADDAIAAIEAQMVDKNVSGEKLNTQVVVDD
VKPVDPSAIVLSEKPSYAADAKEATRKAYGLALAKLGRSSDRVVALDGDT
KNSTFAITFQKEFPDRFVECFIAEQNMLGVGMGCATRDRTVAFASAFACF
LSRGYDQIRMGAISQTKLKMAGSHVGVSIGEDGPSQMALEDLAMFRAINN
CTVFYPSDAVSCERAVELCANTPNMCYIRTSRPATSILYGADEVFEAGKG
KVVKQTASDFCLLIGAGVTLHECLKAHETLKAEGINTRVFDPFCIKPLDV
QGIIANAKACNGNIVTIEDHYPEGGLGEAVLSAVAMETGIRVQRLAVTGL
PRSGPSAALMEMFGVSAKQVVEAVKKF

Run BLAST on NCBI

transcript from alignment at sc0000122:340662..351793+

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00011197 ID=TCONS_00011197|Name=TCONS_00011197|organism=Clytia hemisphaerica|type=transcript|length=11132bp|location=Sequence derived from alignment at sc0000122:340662..351793+ (Clytia hemisphaerica)
GTTCAAGATGTCGAAAGTGTAGATAAAAGGCGGCTTTTTCATCTAGGATC
ACTCCAAGCAAATCACGCACGTTGCAAGACTTTGCTGACTGACTGGCGAG
GAACAAAGAATTCAAGTACATTCTTGAAATTGGAAAACAACAAACTTAGT
AAGTATATTTCTTCATACTATTTGTGAATGTTGGAAGGTTATTGAAAGAC
TTCTTATCCTCTATATTTTGCAACCatgtttgaattttgaaggacTCTCT
AAGTTTCAAGACATAAGCGATAAGCTAATTATATTACCAACAAGTTTTGA
GGCTTCATTTCTCTACTATGCTGAAAAAGCAGAATAAACTGGAGTGCTAA
AAGGGgagagttattttttcttttgtttaaaaaaacttgCAAGAAAATAG
TTTAGATTATACATAATTCGGAGTTCAAAATTAGGCAACCcctttatagt
atttttagacGGTCCCTGTTTGAAAAATAGTCTAGGTGGCAGGCCCCTAA
GttccagacaatctcaatcaaaAGGAATTAACAACCAGATCATACACAAA
TGCCATTGAAATTCAATTATGTTTGATGACATTTAAAGATGTGTTCGATT
GCATTCTAGTGAGATTGCTTGAGTATGgggtatagaccttttcgccagAA
GCAGCTAAATGCCAAGAAAACGCAAGTCGTCATTTTCCCcgaatttcccg
atttcccgatttaaATCCGAAATCGGGTAGTATATCATTTCGggattcac
tttcgttttcggacttAGTGattttttcagactttttctcAGGAACCTGC
AGGAACTCCAATCATCTCTTGGTTTACCATTGAGCCCTTCTTTTTTTAAG
TGTCCGTGAATTAGGTTTATCGCCCAAAGTTAACAATTTAGCCTCACTCT
GTATAATTCAGGATTTTCTCTGTCACACGTATACGTCGAGCCAATGTTGA
AGTTAGACACGTTATAGTTATTTTATAATGAAAAGCATGTAAATAGTAAT
TTGCGTCTTCTCGTGATATCACTTTCTCTTTGATTAAAAGCTAAGATCTG
AGATGACGCAAATAACTCTCCCGAACAAGtccgaaaacaaaagtgaatcC
CGAAATGATATACTACCCGATTTCGGATTTAATCAGGAAATCTGGAAATT
TGGGGAAAATGGCGACTTGCGTTTTCTCGGCATTTAGCTGCTTctctttt
cgcctttccatctgccatcttgaattgtatgcaaaaatagaggaacaaaa
aagctgtggttggatttagttggaaaatatgcaaaacatatgcaagttta
cacaaagattaaaaagacaacaaagcatcttataattaaagaaatattat
aatcattagaacaataaaagatggaatttcttaatccaaaaagaattaat
tacagaacaacaaaagccttttagaaattttttctcaaacacattgcata
ttctgttttcatgccattaaaaaattccaccaagacggagtacacGCATC
Aagctttcaaaacacgcaaactgaaagcagttaattatgacgtcacacct
tcagcgggttcagatcaatgttttgatttgatcgtctgccgtttctattc
ccaggagaataatctACCGTCAGCCAGCCAAATAAGGATGATTTTTGTAT
CTTCGCGGCTGATTTTTtagtttgagtttatgtctaatgttatggttttt
tgaagtgcttgttctaagagatgagcgaatttgacaatttctagttttca
aaagaagtagatttaatctttcttctacaagattacactttataATAATG
CCAATGATgcaagttttatattaatattttctttttgcatatgtgtTGCA
TACTTTCTAAAGGAATTTCACCACAGCGATTCGGCCatcataatttttgc
atacaattcaatatggagGATGGAAAGGCCAGTGTACAGTGCTAACCTTT
CATTACAGTCCCTCAAACGTGTACAAAAAGTGTTGAATAACAAATTGGTT
TCCTacaagggtcataaattcttgaaatttagataaaatttgaaaatttt
gactgACATTTTTGggaaatagtctctctaaggtggcaaaaatggacaaa
aaattcaaaatttaatctcTCTAGGACATACCTATCTCGCAAACCCAGTA
CTCTGAGTGACTTTAACAGTGTACAATattgaagggggggggggcatgac
TTCTGGAAACCtaaaaaacaaaagtactttAGTACAGTacctgtaagggt
tggaaaaatcagaaaatcaaactttagttccactaagggttggaaaaata
ggaaaatttgaactttgaaatttgttcaaattagtCCAGCAAGTAAGGGT
AGTTTTTTTTTGCTCCTTTCTAGTCGGGCTGCCCATTGCGTCAGCTGGCA
ACCCTAGCACTCCTCTTTGATTATACTAAAGTGAAAGAAATGAATAGACA
AGGCAAGGGTTTGTGCTGTGGGCGAAAATGTTAGTCATATTTATTTGTGG
GCAGACCAGTTTCCATGCCTTTTTAGTGTCTggttatcggacgctgccct
taaagaattgtgaaaataatggtgaaaaaagccttttttgagaaaaaata
ttagaaaagtgccctttttgatGCCTAgtggacaaaaagtgagggaaata
cccaaaagacacgctgattttgttcCTGAGATAATCGAGCAAAATTGAtg
cgaatcaattttgctccattgtctcAGGGACAatagtgagatttcacttt
gaTTGGTAAAAAGAAAAGTGGCGTTGAGACAGGAGAAAGCGTTTcatgtt
ggtgggatggagcatgttgcattggaccaacgcgaaaaaaacttcgcGTC
CCCAAGCCTTAATTCTTGTTGAGTTTATGCAAATAAATACATAGAAATGA
AAAATAGCTGAGCAGGTGGCCTGACCTAGGGTTATTTCTAGTACCAGTTG
TCATGGAACCCTTCACCTGAAGGGAAATATGGGGTACAttattttattgt
tgttttccCCAAGAAAATGAGATTACTTCTAATGGGATGTCATCTTAATC
TGTTTCAAAATTATTGCAATTAAGTAAAGAATAAGATTACATTTACagta
taaatttaaatttttttcttacagTTACAATGGCTGAATTATATCACTGC
CCAGACCAaaagaaaatccaaaacttgaaaGATGTTGCCAACAAACTTCG
AATTTTGAGCATCAAATGTACAAATGCTGCAGGATCTGGGTAAGAAATTT
TTGAttgctttatttcattttgGAACAGTTataaccaatgaagtataagc
ctgaagggctagaagtcaatctcctcggtaggatttgaagccaaccaaac
taaaatttaccgctaaatttcgaaaaaaatatcaatcgtaaacaaaggaa
ttgctagattcaatctgttgtCAAAAatgcagcgcattttttatttttaa
ggcttcactttttcttgcctgagaaaggttagagattgaacttcTAGCCC
TTttggctttaaactcaatggttataaCCTTATTTCAATATTTGAAGTGC
ATGAATCAGAACACCTATATAAAATCTTTTCTTTCAACTATCAACAAAAT
TTTCCTGTGGGGAATGATGATGGATTCTTAAATATAATATTGTAATTAGT
CGTAAACAATGTTTTTGGACAGACTTGAGCCATAGTCAATGTTGACCTTA
CTTTTGCCTTTCGTACATATTTGTTATTATGGAAGGTAATATGTTGACTC
AACCATTTCTTTCAGCCATCCCACATCATGCTGCTCGATGGCTGAGCTCA
CATCTGTTCTTTTCTTCCACACCATGAAGTACAAAGgtattattttgttt
gtttctttatGTATTGAAAATTTAGAATTAACCCTTTCCTTTGCATTTTC
CACAATTTGATAGTTGATTGTAAAAAGTTGATCAACTAaaacagtgctgc
aaataacagCCGATAATCGGTAAATACCggtcattttgtagtttctacGG
GCCATTCTGAAGctaagtttttcattttgtccggttaaaatttgATGATT
AGAGGCTAAGATAAATACTTAGCGCTTGTAACTAAAAGAGGAAttcattt
taaattaaaatagcTGTTTCTAAAGGTCATTTCAGACAAAATTTTCTAAG
GGGTTTCCACCAGACCCCTGCTCTAATCATTCTTGTGAAAAAATTACTGG
CCAAATGAatgaaatttccttaaaaattcctaaaatcttTTCCAGTCTTC
TTAGTGACTTGTGGTAATTTGTGAtgaaataataactgaataaaagggaa
tcaaaactatgtttttttcattttcagtaagCGATCCAAGAGATGCATCC
AGTGATCGATTTGTCTTATCTAAGGTTAGTTTTCacaatataaacaaaat
ttgCTGGTGGATGATGTCAGCTAGCAACCAGCCTTTCTGATTCAGATTTA
TTTGCGCTTTGACAAACAATTCTGCGTTCTATGGTACAGTAAGCACTTTT
GTGTCAGCAAAAGCCAAATTAAAGTAAGCATTTGCATTGACAATAGCCGA
AAGCTGACCCAAAATTAAAATGATACGTAAACTTTCTTCACTTTATCTAT
CAAGCTGCTTAGCTATGAGTAGAAGCTCAAATTGTGGTTGGTTTACTTTA
CTTTCAGCTTGTATGCTACATTCAATAATACTTTGTTCTTGTATTCCATA
TTTAGGGTCATTCTGCCCCAATCCTCTATGCTGCTTGGTGTATGGCTGGT
CTCTTCAGTGAAGACGAACTTATGCAATTACGAAAACttggaaatgattt
ggaagGCCATCCTACACCAGTATGTTTGTTTCTTTTGTCCATACACTTTT
TATGGTTTAAAAACTTTACTAAACATTCAATGATTTTAATTAAGTTCAAC
AATATTATGgtttaatttttaattcaaaattgtTTACAATATTAAGGACC
TCtactttttttaccttttctgaTAGTGCCAgataatacttgtattatat
aatatataaataatCAGTTTAATTTAAGGGTCTGAAGATATCTAAGGATT
TTACTCCCAGTAAGCAAAGGATCTCCACTTAAAGGTTGTGATACATAAAC
ATATTGCTTTTGACAATCTAATATTCCCTacacattttcataaatttact
aaaaataggAAATGTTTAATATTGTGAGCCTCTAACATGGCTTcagattt
acaaaaatttggATTCCAAATGAGATTCCAAACAAATTCCAATACATATT
CCCCAAAGAGGAGTCAGCCAATCTCTATTGTTAAAAGGTTAATCCCCTTA
GCAAACAAATTCTTACAATAGAAAAAGGAGATAAGGGCAGTTATTGTGCA
TACGTGCACATTTGAAAGGGGGTGAATTGCAGAAAAATAGTACAATGTCC
CGTCCGCATCAGGCACTTTTTGAGGACCCATAACTCAACTTTGGCAAATG
CAATTTCTAAGAACTTCACATTTTTGTAGCCTTCCTTGGATTGttataga
atttttttgttacagcctcaatcttgagaaaaatgtTGTGTATGGGACAC
TTTGTTGCGGACaggacaaaaagtttttcacccATAGCTAGTTACATgta
aagtcaagaaaaatgataCTGCTGCAAAAGCATGTGGTTCCCTATAGTTC
ATTGGCTTGATAAAGTTAGAACATTAAAGTTGtctcaaaaaaagagaaat
taagACCGTTGCGGACGGGACAAATTTTTGGACCGTATTAGTTTTTAcca
gttaaaaaattaaaaatcttatTTATAGGCAATAAATGTCTTTAACGCAA
GAAGCCATTTAATATGTCACAACAAGACGAAAATGGTGCTCTTCTAGTTC
CCAGATCTTGACTTGTAAGCATAAATGGAGCTTTTGTTGCGAATGGGACA
TTGTACTATTTTTCTGCAATTCACCCAAGGATTAAAATGTGATAGAGGAA
ATGTCATGGTATAACATCTGTCAGCATTTTTCTTGGCTTCgctattttta
gtaattttgTGAAAGTGTAGGGAATGTGTATCGCAACCTTAACAATGATG
AAtgaatgattttgtttttcacaGAGATTGAACTTTGTTGATGTGGCCAC
TGGATCTTTGGGTCAAGGTCTAAGTTGCTCTGCTGGTATGGCATACACTG
GAAAATACTTGGACAAAGGAAGGTAAGAAAACTTTATTGATTCAATGAGC
TGTTCTTCCTACTGTAGTGCATGTAggggtagagcatccagctacggtgc
acaACACAAgtttgtgggttcaacccccagcctggcagccctgtgaatcc
aggtcggcattcggcaatGCCGACCTGAAAGCCGACGTAACTTGCGTGCC
GAAatgattttgtctgaattcacaGGGCTGGCCCGGTCaaaccaaagatt
ctcaaaatggtactttatgcctctctgcttgatgctcagcaattaagaga
agggtcaagggtaagtggagcctTCCCCTAGCTCTCGAAGGAAGAGCCTT
TGGGTCATCTCTGACTGTGGTCCCAGACTTACTTACTTCTAAAGCTCAAA
TCAGGGGCCgcggctccactttgaaagtgatGGGGCCATGATATACTGAc
gaaggaggcgccaccatggttggcgccgacgggcgaaaatttttgagttt
tagctcttctagatcgccTAATACAGGTTGGTTTTAAGGTTATTAAGCCA
AGATTGGCTTGattagtaaattttctttttactttgaaaaaatgtggtcg
ggCCAAGGCCCGGGTGGCCCCCCCGGTGCCGCGGCCCAtgcaaatgtttt
aaaaatttatagCGTTATAAGTTCTTCTTCTTTGGATTGTTGAACTTTCC
CTGTCTGCAGAGTTTCAGTCTTGAAAAAGACAGGAAAGAAGGAATTTATC
AATATTTGGTCACGGCTCATGGTAAAATTACCATTTTGTATTGCGTTATC
ATTGTACaccaaattttattatttttacagCTACCGTGTTTTCTGTTTGA
TGGGTGATGGTGAAAGTGCTGAAGGTTCTGTCATGGAGGCTGCCAACTTT
GCTGGGTACTACAAATTGGACAACTTGGTTGGTATCATTGACATTAATCG
TTTGGGACAAAGTGACCCAACCTCATTACAACACGAAATGGATGTTTACC
AAAAGAGATGGGAAAGCTACGGGTAGGTAGAATttcattattatcattat
tgaAATAACAGTTTTTTCCCTTCCGTTTAACCTGAATTTATGAGCACCTA
TGAGAGCTCCATCAAGAAGAGCCAGAAATGATTACCTCTAGATTGTCTTC
AGCTGATTGTTTTACTTCATTTCCAATTTCAGGTGGAATGCCATTGTTGT
TGATGGACATGATATTGAAGCAATTTGCCGTGCTTACTTTGATGCTGAAC
AAGCAAATGGGCGACCAACTATGATCTTGGCAAAGACATACAAAGGAAAA
GGTATAATTATTCAAAAGTGTTTACATTCTACTCAATCCaaaaaaaacca
taaaaaatGCAATACACATTTTAAAGTGATAAGAAgactttttcatcttc
ttcaagTCTTAAAAACATTCTTGTCCTTTGAATATCAGGTGTTCCTGGCG
TTGAGAACGAGATGAACTGGCATGGAAAAGCTCTCGGTGCCAAAGCTGAT
GATGCTATCGCTGCTATTGAAGCTCAAATGGTCGACAAGAATGTATCTGG
TGAGTTTCGCTATCTAAATTTCGAAGATTCATGCCCTCCCAGTCAGTTTG
CTTTCAAATAATCGACGCCTTGTTCGTATGCGGTCCAAGCCCTAAGTTGT
GTCATCATACAGTAAAAATGATTGTTATAGCAAAACCTTTTCTTGCAGGC
GAGAAATTGAACACTCAAGTGGTTGTGGATGACGTCAAGCCCGTTGACCC
GTCAGCCATCGTGCTGTCAGAGAAACCATCATACGCAGCTGATGCCAAAG
AGGCTACCCGAAAAGCTTATGGTCTCGCATTGGCTAAATTGGGTCGATCT
TCAGACCGTGTAGTTGCCCTTGATGGTGATACCAAGAACTCGACTTTCGC
CATCACCTTCCAAAAAGAATTCCCAGGTTCGTATCATTNGTTGACCCGTC
GGCCATCGTGCTGTCAGAGAAACCATCATACGCAGCTGATGCCAAAGAGG
CTACCCGAAAAGCTTATGGTCTCGCATTGGCTAAATTGGGTCGATCTTCA
GACCGTGTAGTTGCCCTTGATGGTGATACCAAGAACTCTACTTTCGCTAT
CACCTTCCAAAAAGAATTCCCAGGTTCGTATCATTGGCTCCATATTTTTA
TGTAGATTGGTGACCTTATCAAGCAGAGAATTCACTGAAGTTAAAAACTG
TCATCTAAAGGCTGTTCATGACATTTATATTATGTATTGAATTTAATTAA
AAATGATGCACCTGTTTAAATGAGCTATGTTCAGTATTCATTAATACTTT
TTTGTTCCTACTTAAAAGATCAAGTGAAACAATTTTAATTCCAAGCACTT
AACACTAGatttttctttaccttttttATCAGACCGTTTCGTCGAATGCT
TCATTGCTGAACAAAACATGTTGGGCGTCGGTATGGGATGCGCCACAAGA
GACCGCACGGTGGCGTTTGCAAGTGCCTTTGCCTGCTTCTTGTCCCGTGG
GTACGATCAAATCCGTATGGGTGCTATCTCTCAAACTAAATTGAAAATGG
CTGGCTCACACGTTGGTGTCTCTATTGGTAAGCTTCGGTTTCTTTATTCT
ATTAGAGTCCCACTCCTTTTTCAGGAAGGTGACACTTTTACGCCTAACTT
TTACGCCTTGTTTTTTTTGGTACTATTAGACCGAAGTATTGCATGTGTAG
GTCTTgatatttgattggttgattgatctTTAGAAGGAAATTTCAGAAGT
AATACTTAAATAAAAATTACGACTTACAAAAATTACCTTTTCCACCCgac
aaaatttataaatttgtttttttcaaatcgcATGAGAATCCAGAAATCAA
GCGAAATTcagattggttgaaaaatacgAGAAAGTTGGGCGGATGTATGG
TTATGAAAAGTTCCTTTCTGTCTATATAGGTGAAGACGGTCCATCTCAAA
TGGCTTTGGAAGATCTCGCCATGTTCCGCGCCATCAACAACTGCACTGTT
TTCTATCCCTCCGATGCCGTCTCGTGCGAACGCGCGGTCGAATTGTGCGC
CAACACACCCAACATGTGTTACATTAGAACTAGCCGACCAGCTACTTCTA
TCTTGTACGGTGCCGATGAGGTCTTCGAAGCCGGCAAAGGAAAGGTAAAA
AATCGTATCATATTTTTGTGTCTTCTCATAAATTTTACTCtcattcaaaa
attgaaaaataaagccTTTCTCTCGTAGGTTTTAGTGTCAACCTCAAGTT
TGATTAAAGCAATCCTCAGAAtctggaaaaaaaatcatcctacAAAttgt
aatataaaaaaaaacgaccTCAAACGCTGTATCAGAATCtgaatattttc
agttcttgacatatttttcaaaattgttttttaacaGGTCGTTAAACAAA
CAGCTTCAGATTTCTGTCTCTTGATTGGTGCTGGTGTAACACTTCACGAA
TGTTTGAAAGCACACGAAACTTTGAAAGCTGAAGGTATCAATACTCGTGT
CTTCGATCCTTTCTGTATCAAACCATTGGACGTCCAAGGAATCATCGCAA
ATGCTAAAGCTTGCAATGGAAATATTGTCACCATTGAAGACCATTATCCA
GAAGGTTGGTAGATGATTATTGTTGCCTGGTCgacttcaatttttgtttt
agagGAACAGATTTTGTATCGGCCTCGGCCAATCTTTTTAGTAAACTTAT
GACTCATCGGGGCTTTTAGGTTCTGGGATGTCAGgttcagattgttctta
atttgttcttgttTTTTGGGATAtttgaaattgtgtttttcaacTAACGA
TGGACTCGATACGTATTACACATTATTGAAGCATCGACAATCCGATTtaa
gattatttttgaaaattcggaCTCTTCAATAGTTTTACAAAAACTCATTT
TCCGTTTTCAGGTGGTCTTGGTGAAGCTGTTCTGTCCGCTGTCGCCATGG
AAACTGGAATTCGCGTCCAACGATTGGCTGTCACTGGTTTGCCACGCTCA
GGTCCATCCGCTGCTNATTTTCTTGGTAATTTCTGGGATGTCAGgttcag
attgttcttaatttgttcttgtttttttgGGATATTTCCagtgaaattgt
gtttttcaacTAACGATGGACTCGATACGTATTACACATTATTGAAGCAT
CGACAATCCGATTtaagattatttttgaaaattcggaCTCTTCAATAGTT
TTACAAAAACTCATTTTCCGTTTTCAGGTGGTCTTGGTGAAGCTGTTCTG
TCCGCTGTCGCCATGGAAACTGGAATTCGCGTCCAACGATTGGCTGTCAC
TGGTTTGCCACGCTCAGGTCCATCCGCTGCTTTGATGGAAATGTTCGGAG
TTTCTGCCAAACAAGTCGTCGAAGCTGTCAAGAAATTCTAATAAGTTGTT
TGGCTGTCTCGCGTAGAGATTAATGTGACCGCGCTTTCCGAGAGCGTTTC
CTACGAGATGAGATATGGGGATATGTACTGAACTAAATGAGATAGATATT
ATATAAAGCTGTATTTAGCGTAGATGTGAACTGTCTTTTCCCTGTGTATC
GTTCCAATGAATAAATGTTCTGGGAAAATTGACAAACGGGGCAAAAGACA
CGGTATTCTACGTTGAATAGCATTTAACTACCTATGAATAATCTTAAATT
GTCAAAAACGATTTAGTTCAAATTTACATAGTCTGATAAAATGGACTTCG
TTCAGTTTTATGTTACTTTTTGcgtgattttattttttcgacttttattt
atattttggtatttttgctTGATCTTGTAAAACGGTAAATTggcttttgt
aagattttttgtGATCGAGGATGTAATTTTTTATGCTTGTTTTACTTTTC
TGTGAAAACAGAACGGAAAGAAAAAGCAATAGATGATGTTATAGAATACT
TTGTATCCATTCATTCATTAATATGCTTGATAGCAATGATAACTTACTAT
CAACCTCAATTGAAAATGTTGTATCGTTGGAA

Coding sequence (CDS) from alignment at sc0000122:340662..351793+

>TCONS_00011197 ID=TCONS_00011197|Name=TCONS_00011197|organism=Clytia hemisphaerica|type=CDS|length=2034bp|location=Sequence derived from alignment at sc0000122:340662..351793+ (Clytia hemisphaerica)
GTTCAAGATGTCGAAAGTGTAGATAAAAGGCGGCTTTTTCATCTAGGATC
ACTCCAAGCAAATCACGCACGTTGCAAGACTTTGCTGACTGACTGGCGAG
GAACAAAGAATTCAAGTACATTCTTGAAATTGGAAAACAACAAACTTATT
ACAATGGCTGAATTATATCACTGCCCAGACCAaaagaaaatccaaaactt
gaaaGATGTTGCCAACAAACTTCGAATTTTGAGCATCAAATGTACAAATG
CTGCAGGATCTGGCCATCCCACATCATGCTGCTCGATGGCTGAGCTCACA
TCTGTTCTTTTCTTCCACACCATGAAGTACAAAGtaagCGATCCAAGAGA
TGCATCCAGTGATCGATTTGTCTTATCTAAGGGTCATTCTGCCCCAATCC
TCTATGCTGCTTGGTGTATGGCTGGTCTCTTCAGTGAAGACGAACTTATG
CAATTACGAAAACttggaaatgatttggaagGCCATCCTACACCAAGATT
GAACTTTGTTGATGTGGCCACTGGATCTTTGGGTCAAGGTCTAAGTTGCT
CTGCTGGTATGGCATACACTGGAAAATACTTGGACAAAGGAAGCTACCGT
GTTTTCTGTTTGATGGGTGATGGTGAAAGTGCTGAAGGTTCTGTCATGGA
GGCTGCCAACTTTGCTGGGTACTACAAATTGGACAACTTGGTTGGTATCA
TTGACATTAATCGTTTGGGACAAAGTGACCCAACCTCATTACAACACGAA
ATGGATGTTTACCAAAAGAGATGGGAAAGCTACGGGTGGAATGCCATTGT
TGTTGATGGACATGATATTGAAGCAATTTGCCGTGCTTACTTTGATGCTG
AACAAGCAAATGGGCGACCAACTATGATCTTGGCAAAGACATACAAAGGA
AAAGGTGTTCCTGGCGTTGAGAACGAGATGAACTGGCATGGAAAAGCTCT
CGGTGCCAAAGCTGATGATGCTATCGCTGCTATTGAAGCTCAAATGGTCG
ACAAGAATGTATCTGGCGAGAAATTGAACACTCAAGTGGTTGTGGATGAC
GTCAAGCCCGTTGACCCGTCAGCCATCGTGCTGTCAGAGAAACCATCATA
CGCAGCTGATGCCAAAGAGGCTACCCGAAAAGCTTATGGTCTCGCATTGG
CTAAATTGGGTCGATCTTCAGACCGTGTAGTTGCCCTTGATGGTGATACC
AAGAACTCGACTTTCGCCATCACCTTCCAAAAAGAATTCCCAGACCGTTT
CGTCGAATGCTTCATTGCTGAACAAAACATGTTGGGCGTCGGTATGGGAT
GCGCCACAAGAGACCGCACGGTGGCGTTTGCAAGTGCCTTTGCCTGCTTC
TTGTCCCGTGGGTACGATCAAATCCGTATGGGTGCTATCTCTCAAACTAA
ATTGAAAATGGCTGGCTCACACGTTGGTGTCTCTATTGGTGAAGACGGTC
CATCTCAAATGGCTTTGGAAGATCTCGCCATGTTCCGCGCCATCAACAAC
TGCACTGTTTTCTATCCCTCCGATGCCGTCTCGTGCGAACGCGCGGTCGA
ATTGTGCGCCAACACACCCAACATGTGTTACATTAGAACTAGCCGACCAG
CTACTTCTATCTTGTACGGTGCCGATGAGGTCTTCGAAGCCGGCAAAGGA
AAGGTCGTTAAACAAACAGCTTCAGATTTCTGTCTCTTGATTGGTGCTGG
TGTAACACTTCACGAATGTTTGAAAGCACACGAAACTTTGAAAGCTGAAG
GTATCAATACTCGTGTCTTCGATCCTTTCTGTATCAAACCATTGGACGTC
CAAGGAATCATCGCAAATGCTAAAGCTTGCAATGGAAATATTGTCACCAT
TGAAGACCATTATCCAGAAGGTGGTCTTGGTGAAGCTGTTCTGTCCGCTG
TCGCCATGGAAACTGGAATTCGCGTCCAACGATTGGCTGTCACTGGTTTG
CCACGCTCAGGTCCATCCGCTGCTTTGATGGAAATGTTCGGAGTTTCTGC
CAAACAAGTCGTCGAAGCTGTCAAGAAATTCTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006272	XLOC_006272	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00011197-protein	TCONS_00011197-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000122	supercontig	sc0000122:340662..351793 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1040.94	1027.2	1139.06	1007.64	47.7464	39.1632	103.339	102.113	195.746	233.045	325.619	195.842	714.147	760.583	321.295	345.624	443.699	470.282	695.698	900.985	488.543	497.349	667.788	737.983	427.118	381.626	348.535	377.5	552.807	465.333

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR005475	Transketolase-like_Pyr-bd
IPR005474	Transketolase_N
IPR009014	Transketo_C/PFOR_II
IPR033248	Transketolase_C
IPR020826	Transketolase_BS
IPR029061	THDP-binding

Vocabulary: **Biological Process**
Term	Definition
GO:0008152	metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
molecular_function	GO:0003824	catalytic activity

Blast

[Close]

BLAST of TCONS_00011197 vs. Swiss-Prot (Human)
Match: TKT (Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3)

HSP 1 Score: 754.592 bits (1947), Expect = 0.000e+0
Identity = 367/612 (59.97%), Postives = 455/612 (74.35%), Query Frame = 1

Query:  160 ELYHCPDQKKIQNLKDVANKLRILSIKCTNAAGSGHPTSCCSMAELTSVLFFHTMKYKVSDPRDASSDRFVLSKGHSAPILYAAWCMAGLFSEDELMQLRKLGNDLEGHPTPRLNFVDVATGSLGQGLSCSAGMAYTGKYLDKGSYRVFCLMGDGESAEGSVMEAANFAGYYKLDNLVGIIDINRLGQSDPTSLQHEMDVYQKRWESYGWNAIVVDGHDIEAICRAYFDAEQANGRPTMILAKTYKGKGVPGVENEMNWHXXXXXXXXXXXXXXXXXQMVDKNVSGEKLNTQXXXXXXXXXXXSAIVLSEKPSYAADAKEATRKAYGLALAKLGRSSDRVVALDGDTKNSTFAITFQKEFPDRFVECFIAEQNMLGVGMGCATRDRTVAFASAFACFLSRGYDQIRMGAISQTKLKMAGSHVGVSIGEDGPSQMALEDLAMFRAINNCTVFYPSDAVSCERAVELCANTPNMCYIRTSRPATSILYGADEVFEAGKGKVVKQTASDFCLLIGAGVTLHECLKAHETLKAEGINTRVFDPFCIKPLDVQGIIANAKACNGNIVTIEDHYPEGGLGEAVLSAVAMETGIRVQRLAVTGLPRSGPSAALMEMFGV 1995
            E YH PDQ+K+Q LKD AN+LRI SI+ T AAGSGHPTSCCS AE+ +VLFFHTM+YK  DPR+  +DRFVLSKGH+APILYA W  AG  +E EL+ LRK+ +DL+GHP P+  F DVATGSLGQGL  + GMAYTGKY DK SYRV+CL+GDGE +EGSV EA  FA  YKLDNLV I+DINRLGQSDP  LQH+MD+YQKR E++GW+AI+VDGH +E +C+A+    QA  +PT I+AKT+KG+G+ GVE++ +WHGK L     + I       +    S +K+      +D   VD + I +   PSY    K ATRKAYG ALAKLG +SDR++ALDGDTKNSTF+  F+KE PDRF+EC+IAEQNM+ + +GCATR+RTV F S FA F +R +DQIRM AIS++ + + GSH GVSIGEDGPSQMALEDLAMFR++   TVFYPSD V+ E+AVEL ANT  +C+IRTSRP  +I+Y  +E F+ G+ KVV ++  D   +IGAGVTLHE L A E LK E IN RV DPF IKPLD + I+ +A+A  G I+T+EDHY EGG+GEAV SAV  E GI V  LAV  +PRSG  A L++MFG+
Sbjct:    2 ESYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPILYAVWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAF---GQAKHQPTAIIAKTFKGRGITGVEDKESWHGKPLPKNMAEQIIQEIYSQIQ---SKKKILATPPQEDAPSVDIANIRMPSLPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSEIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAIIYNNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVVGEPGITVTHLAVNRVPRSGKPAELLKMFGI 607

The following BLAST results are available for this feature:

BLAST of TCONS_00011197 vs. Swiss-Prot (Human)

BLAST of TCONS_00011197 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TKT	0.000e+0	59.97	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	[more]

You are here

TCONS_00011197 (transcript) - C. hemisphaerica