TCONS_00011267 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011267
Unique NameTCONS_00011267
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011267 ID=TCONS_00011267|Name=TCONS_00011267|organism=Clytia hemisphaerica|type=transcript|length=1379bp
GTCTAAGAGAAGACTATGAAAATGACGCTCATAAAAGTAGTGACATTACT
ATCTTCAATCATTTTGCTCGCTGAATCTGGGTTTGCAGTGTCTGTTTACC
CAACGCCTGCTGAAGTGGAAGCCGCTAAAGTTGCCATCGCAATGGTGATC
GACGGTAATATAAAGAATACTGATGAGAGACCATTCATTGCTGGTTTAGT
ACGTCTCGCATTTCACGATTGTGTTGGTAATGGTGGATGTGATGGTTGCA
TTAATCATGGATTAGCTGCGAACCGTGGACTATCAAAATATACCATCAAA
TTGGATGAAGCTTATAATACCATTTCCTCAACCATGTCACGTGCTGATTT
TTACACCCTGGCTGGTTATGTTGCTCTTGAGAAAGCAACTGAAGGACTGG
TCGAAGCCCAACGGTTTAACGCGGAACCGAAATTTGGAAGAGAAGATTGT
CCAGACTCGCCAGATGAAGATGAGGCCAATGAAAATTTCCCTGATGCTAA
ATGGAACTTAAATGCTGTTGAAGATTTCTTTGAGAACGATGGTTTCGTAT
TTGATCCAGCAGATGTTGTGGCAATCCTTGGTGCTCATTCACTTGGTAGA
GCCCATACCTCCAATTCAGGGTATGAAGGTAAATGGCTGAATGGATTTCG
TTTTCGTAATCCTAATGTAGCCCATTCAGAcgttttggacaatttttatt
ACCGACAAATTAATAATGATGGATGGAACCAGATACAACTTGCTGACAAT
GGTAACTTTCAATGGCAACAAAACGATATTGAGCAACCTGTAGCGCCTCT
GGATGCTGAAGGTTTCCCACTAAATCCGACACGTCGAAGAGATCCACGTC
AAGTAAACATGTTCTTAAATGTCGATATGGCTTTGCGATGGGATTTGGGA
ACACCAAACTCACAAAATGGACAAGTTGTCTGTTCAACAACATCAACGCC
ACCAACATGTCCAGATTCACCTCGATTCAATCTCTTTGATCGATACAGAA
GAAACAATGGGAATTTCATCAACGCTTTTGAAATCGCTTTTGAGAAAATG
GTGGAAAGTAAAGAAACTGAAACATTGTTGGAAGCTTAAGAAGAACTTCA
ATCAcaaccgaggggggggggcaacctcgttccctgcgtattgtcagctt
ttgatgcttactgatagcgctagataataccctggcattggctggttttc
gagCGCGTatgattacgtaattcaaaaacaaaacgtcagatttcatttgt
tcctgggtttgaaaccattgcattgcagtgcAACTTTGTaacgttaattt
tttttatgacgtattgttttgagaagttccccctctgagagggggaactc
gcatcagccaacaccagggtattctctgg
Run BLAST on NCBI

protein sequence of TCONS_00011267-protein

>TCONS_00011267-protein ID=TCONS_00011267-protein|Name=TCONS_00011267-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
MKMTLIKVVTLLSSIILLAESGFAVSVYPTPAEVEAAKVAIAMVIDGNIK
NTDERPFIAGLVRLAFHDCVGNGGCDGCINHGLAANRGLSKYTIKLDEAY
NTISSTMSRADFYTLAGYVALEKATEGLVEAQRFNAEPKFGREDCPDSPD
EDEANENFPDAKWNLNAVEDFFENDGFVFDPADVVAILGAHSLGRAHTSN
SGYEGKWLNGFRFRNPNVAHSDVLDNFYYRQINNDGWNQIQLADNGNFQW
QQNDIEQPVAPLDAEGFPLNPTRRRDPRQVNMFLNVDMALRWDLGTPNSQ
NGQVVCSTTSTPPTCPDSPRFNLFDRYRRNNGNFINAFEIAFEKMVESKE
TETLLEA
Run BLAST on NCBI

transcript from alignment at sc0000124:140694..145882+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011267 ID=TCONS_00011267|Name=TCONS_00011267|organism=Clytia hemisphaerica|type=transcript|length=5189bp|location=Sequence derived from alignment at sc0000124:140694..145882+ (Clytia hemisphaerica)
GTCTAAGAGAAGACTATGAAAATGACGCTCATAAAAGTAGTGACATTACT
ATCTTCAATCATTTTGCTCGCTGAATCTGGGTTTGCAGTGTCTGTTTACC
CAACGCCTGCTGAAGTGGAAGCCGCTAAAGTTGCCATCGCAATGGTATGG
TAGCATTATTATTTTTTCCCAAGTTCCTTTTTACTTCTATCAGTTTTAGG
TAGGCTTTTGCTAACAGGAAACTTGCACCaaatttcttcccgccaaaatg
tcTTCTATTTATTATTCACACCATAGGTGATCGACGGTAATATAAAGAAT
ACTGATGAGAGACCATTCATTGCTGGTTTAGTACGTCTCGCATTTCACGA
TTGTGTTGGTAATGGTGGATGTGATGGTTGCATTAATCATGGATTAGCTG
CGAACCGTGGACTATCAAAGTAAGTTTTTACTTTATCATTGGATTCTTTc
cacttgtttcaaataaaaagttgTGAACAAAAATTCTGTCCCCGGTGAAG
TCCCTGCAACTTCCCAAGCTGACAacacacaatgttgttttaaagttttt
tatcacaacgtccatataacgtttgAGGAAAtcaaacaacgttgtgtgtc
aactGGTTCAGCCCCACTGGACTTTTGACCTTGATTTCATCCCCTTTTAA
ATTTTAAtgggaaaaattgcactccCTCAAAACCAATCCGCTTAATTTTT
TGACCTACGAACAATAGAATTATCTATCCCCAATGGGATTCCCCATTAGG
GAGGAAGTTCCCCgcggctgtgagacaggggtgtataattcGACCAAAAC
TATCGTTTACTGAATTTTAGGATGACTCTTAAAAGAGATTTTCTAAAGTC
AAATTGCTACATTTCATTGTAAtgaaatttctatttctattcatTTACAC
AGATATACCATCAAATTGGATGAAGCTTATAATACCATTTCCTCAACCAT
GTCACGTGCTGATTTTTACACCCTGGCTGGTTATGTTGCTCTTGAGAAAG
CAACTGAAGGACTGGTCGAAGCCCAACGGTTTAACGCGGAACCGAAATTT
GGAAGAGAAGATTGTCCAGACTCGCCAGATGAAGATGAGGCCAATGAAAA
TTTCCCTGATGCTAAATGGAACTTAAATGGTACATACAGACCATCTTTCT
CCGTTTAATTCTAATCTTTCTCTAACTCGAACTACCAAAATGCTCCCTGT
AATTTGATGTAATTCGATAATTCGATTCTCTGTCCCTTTAAAATCAATGC
GATATCTTGAAAGGATAGAAAGTTTCTCGAGATTGGGAAATCACTAATTC
TATTTGTCATTGTAAAACGATATATATTTGATGAGGTGTAGATTTTTAGG
TTTTATAACATTTTCCTGTTTGAGAAAACTAAAATGATTCCATTCTAGCT
CTTTAGGGTTTTAAACTCAATCTCCAACGTGTATTTTCTTTATCGGCAGC
TGTTGAAGATTTCTTTGAGAACGATGGTTTCGTATTTGATCCAGCAGATG
TTGTGGCAATCCTTGGTGCTCATTCACTTGGTAGAGCCCATACCTCCAAT
TCAGGTACATCTTTAaggggaattttttcttgaTGCATCTTGATGCAGTT
GTCTTTGTAGGTTCATCATTTCTTCAGGGGGAGTAATAGGTTTGATAGGA
TGACGGTTAACTGGTTAACGTTAAATGTTAATCCCTAGCATGCTATTTCA
ATCACTTAGAATTGTACAATGTGCCCCGTAACACCCTTGTGCCACAGACC
CAATGGGATCCCCGCCCCACTATAAAGTTTTGTCAAAGTTCtctcaaaaa
tggaaaaaatgccTTACAAATTTTAGTCCCACCGagaaattgaatttgat
ttcatccctttttgaaattaaaaggacataaattgcactccaaacgacca
ctactggattttttaagcttttctATCTCGATTAGggatttcgataaaaa
ttttcatcagACTTCAGGAAAAATTTCACGAGGATGTCTCTAATGCGTTT
TTATTTCAATATCTAGGGTATGAAGGTAAATGGCTGAATGGATTTCGTTT
TCGTAATCCTAATGTAGCCCATTCAGAcgttttggacaatttttattACC
GACAAATTAATAATGATGGATGGAACCAGGTGAGGTTTATTTTCCCCAGT
ACAAAATCCACTGAACTTATTGTACTAAATCCACTGATATCTGAAAGAAT
CTGGAGAAGATATTTCACATATGAAATGAAATATTCTCAATTGTTTTAAT
TATATacatatttatttataaaagcATTTAAAGTTTCTGTACCATTTCCA
AAGAAATTGGGTTTTCTAGAGTTCACCAAAATGTTCAGAACTTCTTTTTC
ttaattaatatttttgtaatcaaagccCCCGTATGTTTTTATACTTATAC
TACACAAATATGGCTTGCTTTTACATAAAAAACCTGCATGGTTCATTGAG
TTCATCCATACAGGGGTTGGACAAACCTTTGTAATTCAAAATGATAGTAG
tatcttgaaaattttaagataNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccccccccccccttatgg
aaaaatttatttttatactttAAAGTTATGGTGGACCAACTAAAACTTGT
CTTTTACtgcctggaaattttagaacaaTTTGTTACatcctaaaaaatga
aaaaaaaaaacactcctgtagaccccctggaaatcctTCAGAGTTTACCC
CACGGAAATGTTCGttcacccccctgtatggagataAAATGGAACGGTCC
ATTTCACACTTCAGGTACAACTTGCTGACAATGGTAACTTTCAATGGCAA
CAAAACGNTTCACACTTCAGATACAACTTGCTGACAATGGTAACTTTCAA
TGGCAACAAAACGATATTGAGCAACCTGTAGCGCCTCTGGATGCTGAAGG
TTTCCCACTAAATCCGACACGTCGAAGAGATCCACGTCAAGTAAACATGT
TCTTAAATGTCGATATGGCTTTGCGATGGGATTTGGGAACACCAAACTCA
CAAAATGGACAAGTAAGATATataccatacacgtttttttattagctcca
agcctggagttccttatttttccagagtatttcagcctcaaagttcctta
tcaagTTTCTTACTAAACTAAACTGCTAAGATTGGATTTGGTAAGTGTAa
aaccatagaggtataaagaaagacaggagatgaatttgtcggtaattggt
ctagccagaaaataaaaagttctttataagcacacacaatttcagaccca
atttgtagacaaaaagtcgctggagaattttggaggaaagtattaagcaa
taNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagccaa
taagatttcacctatcaacaaaagagctcattaaaaatgcacgatatatg
agattatgagcatgcatacatcgtaatttttttaatcgtagggcgagcat
tgttacaatagcatacttctcctgtttctttatacctccatggtaaaacc
tttttttataagtataACAATGGACGAAAAGTACAGGAAAAAACGTTTAT
TGAATGTTTTTGTAAATGCGAGCAAGATCAGGTTTAATTCTCTGTTCCTT
AACAAGTCCTTTTTTTCTGGACCATCTTCAGCCTCAAgctccttataaaa
aaaaacgtgtatactctATTTatttaaactatttttcttataagaacacc
caaaatctttaaaatcagttggatgttcttaatcttttacgttttaaaac
ctaaaaatgttttcattttcattttattttttgtgcatTGTCGTAATCTT
TATCCCCAACAACAAGCAATTGTCCACAGGAAAAGGTTTTTCCATGCTGC
AATGACTCTAaatgtaattttcattttgtactAGGTTGTCTGTTCAACAA
CATCAACGCCACCAACATGTCCAGATTCACCTCGATTCAATCTCTTTGAT
CGATACAGAAGAAACAATGGGAATTTCATCAACGCTTTTGAAATCGCTTT
TGAGAAAATGGTGGAAAGTAAAGAAACTGAAACATTGTTGGAAGCTTAAG
AAGAACTTCAATCAcaaccgaggggggggggcaacctcgttccctgcgta
ttgtcagcttttgatgcttactgatagcgctagataataccctggcattg
gctggttttcgagCGCGTatgattacgtaattcaaaaacaaaacgtcaga
tttcatttgttcctgggtttgaaaccattgcattgcagtgcAACTTTGTa
acgttaattttttttatgacgtattgttttgagaagttccccctctgaga
gggggaactcgcatcagccaacaccagggtattctctgg

Coding sequence (CDS) from alignment at sc0000124:140694..145882+

>TCONS_00011267 ID=TCONS_00011267|Name=TCONS_00011267|organism=Clytia hemisphaerica|type=CDS|length=1074bp|location=Sequence derived from alignment at sc0000124:140694..145882+ (Clytia hemisphaerica)
ATGAAAATGACGCTCATAAAAGTAGTGACATTACTATCTTCAATCATTTT
GCTCGCTGAATCTGGGTTTGCAGTGTCTGTTTACCCAACGCCTGCTGAAG
TGGAAGCCGCTAAAGTTGCCATCGCAATGGTGATCGACGGTAATATAAAG
AATACTGATGAGAGACCATTCATTGCTGGTTTAGTACGTCTCGCATTTCA
CGATTGTGTTGGTAATGGTGGATGTGATGGTTGCATTAATCATGGATTAG
CTGCGAACCGTGGACTATCAAAATATACCATCAAATTGGATGAAGCTTAT
AATACCATTTCCTCAACCATGTCACGTGCTGATTTTTACACCCTGGCTGG
TTATGTTGCTCTTGAGAAAGCAACTGAAGGACTGGTCGAAGCCCAACGGT
TTAACGCGGAACCGAAATTTGGAAGAGAAGATTGTCCAGACTCGCCAGAT
GAAGATGAGGCCAATGAAAATTTCCCTGATGCTAAATGGAACTTAAATGC
TGTTGAAGATTTCTTTGAGAACGATGGTTTCGTATTTGATCCAGCAGATG
TTGTGGCAATCCTTGGTGCTCATTCACTTGGTAGAGCCCATACCTCCAAT
TCAGGGTATGAAGGTAAATGGCTGAATGGATTTCGTTTTCGTAATCCTAA
TGTAGCCCATTCAGAcgttttggacaatttttattACCGACAAATTAATA
ATGATGGATGGAACCAGATACAACTTGCTGACAATGGTAACTTTCAATGG
CAACAAAACGATATTGAGCAACCTGTAGCGCCTCTGGATGCTGAAGGTTT
CCCACTAAATCCGACACGTCGAAGAGATCCACGTCAAGTAAACATGTTCT
TAAATGTCGATATGGCTTTGCGATGGGATTTGGGAACACCAAACTCACAA
AATGGACAAGTTGTCTGTTCAACAACATCAACGCCACCAACATGTCCAGA
TTCACCTCGATTCAATCTCTTTGATCGATACAGAAGAAACAATGGGAATT
TCATCAACGCTTTTGAAATCGCTTTTGAGAAAATGGTGGAAAGTAAAGAA
ACTGAAACATTGTTGGAAGCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006316XLOC_006316Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011267-proteinTCONS_00011267-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011267-exon-sc0000124-1491911889:140694..140837TCONS_00011267-exon-sc0000124-1491911889:140694..140837Clytia hemisphaericaexon
TCONS_00011267-exon-sc0000124-1510915933:140694..140837TCONS_00011267-exon-sc0000124-1510915933:140694..140837Clytia hemisphaericaexon
TCONS_00011267-exon-sc0000124-1575043694:140694..140837TCONS_00011267-exon-sc0000124-1575043694:140694..140837Clytia hemisphaericaexon
TCONS_00011267-exon-sc0000124-1491911889:140970..141112TCONS_00011267-exon-sc0000124-1491911889:140970..141112Clytia hemisphaericaexon
TCONS_00011267-exon-sc0000124-1510915933:140970..141112TCONS_00011267-exon-sc0000124-1510915933:140970..141112Clytia hemisphaericaexon
TCONS_00011267-exon-sc0000124-1575043694:140970..141112TCONS_00011267-exon-sc0000124-1575043694:140970..141112Clytia hemisphaericaexon
TCONS_00011267-exon-sc0000124-1491911889:141596..141822TCONS_00011267-exon-sc0000124-1491911889:141596..141822Clytia hemisphaericaexon
TCONS_00011267-exon-sc0000124-1510915933:141596..141822TCONS_00011267-exon-sc0000124-1510915933:141596..141822Clytia hemisphaericaexon
TCONS_00011267-exon-sc0000124-1575043694:141596..141822TCONS_00011267-exon-sc0000124-1575043694:141596..141822Clytia hemisphaericaexon
TCONS_00011267-exon-sc0000124-1491911889:142143..142247TCONS_00011267-exon-sc0000124-1491911889:142143..142247Clytia hemisphaericaexon
TCONS_00011267-exon-sc0000124-1510915933:142143..142247TCONS_00011267-exon-sc0000124-1510915933:142143..142247Clytia hemisphaericaexon
TCONS_00011267-exon-sc0000124-1575043694:142143..142247TCONS_00011267-exon-sc0000124-1575043694:142143..142247Clytia hemisphaericaexon
TCONS_00011267-exon-sc0000124-1491911889:142710..142822TCONS_00011267-exon-sc0000124-1491911889:142710..142822Clytia hemisphaericaexon
TCONS_00011267-exon-sc0000124-1510915933:142710..142822TCONS_00011267-exon-sc0000124-1510915933:142710..142822Clytia hemisphaericaexon
TCONS_00011267-exon-sc0000124-1575043694:142710..142822TCONS_00011267-exon-sc0000124-1575043694:142710..142822Clytia hemisphaericaexon
TCONS_00011267-exon-sc0000124-1491911889:143614..143805TCONS_00011267-exon-sc0000124-1491911889:143614..143805Clytia hemisphaericaexon
TCONS_00011267-exon-sc0000124-1510915933:143614..143805TCONS_00011267-exon-sc0000124-1510915933:143614..143805Clytia hemisphaericaexon
TCONS_00011267-exon-sc0000124-1575043694:143614..143805TCONS_00011267-exon-sc0000124-1575043694:143614..143805Clytia hemisphaericaexon
TCONS_00011267-exon-sc0000124-1491911889:145428..145882TCONS_00011267-exon-sc0000124-1491911889:145428..145882Clytia hemisphaericaexon
TCONS_00011267-exon-sc0000124-1510915933:145428..145882TCONS_00011267-exon-sc0000124-1510915933:145428..145882Clytia hemisphaericaexon
TCONS_00011267-exon-sc0000124-1575043694:145428..145882TCONS_00011267-exon-sc0000124-1575043694:145428..145882Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000124supercontigsc0000124:140694..145882 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0913998	0.0888521	0.27853	0.583175	1.24175	1.42836	0.21921	0	0.369559	0	0.126298	0.512999	2.27183	1.33884	0.466294	0.492873	0.542389	0.487964	1.95822	1.47657	0.760753	0.860732	0.313568	0.509966	0.634717	0.472962	0.540812	0.448753	0.514536	0.51721
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002016Haem_peroxidase_pln/fun/bac
IPR019793Peroxidases_heam-ligand_BS
IPR010255Haem_peroxidase
Vocabulary: Molecular Function
TermDefinition
GO:0020037heme binding
GO:0004601peroxidase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0006979response to oxidative stress
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006979 response to oxidative stress
molecular_function GO:0020037 heme binding
molecular_function GO:0004601 peroxidase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011267 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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