TCONS_00011313 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011313
Unique NameTCONS_00011313
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1590

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011313 ID=TCONS_00011313|Name=TCONS_00011313|organism=Clytia hemisphaerica|type=transcript|length=1590bp
CATATCATTATCGGCGCAACCTTGACTAAAATTTTTCTACAGTCATTGAT
TGCTTTTAAGATGGAGAACCATCATCTcttaatttctttgttttttttga
caGCTTTGGTGTTGCCTGGCAGTCatgttgtacttggtggacaacCTGAA
GAAGGCAAATTTTTCGAAGGTGATATGATGCTATCACCAGACCAATTAGC
TGCTTTGACTGAACAACGAAGTAAACGAAAAGAGGGGAGCAACACTTTCG
CTTCAATCAAATCAAGTCATTGGAAAACAAACGGAAAAGTTGATCTCATC
AAGTATTATATCGATGAGGATTTCAATAGTCATGGATATGCAATTGAGAC
CATCAAGCATGCGATAGCAGATTATGAAAAATACACATGTATACGATTCC
AACAAGTTGATCGATTACCATCGCGTGGCCCTTATATGCATTTTGTCTTG
AAAGGAGGATGTTTTTCAAACGTTGGAAGAAATTCATGGGGAAACGAAAT
CAGTTTAGGTTATGGTTGTTGGAACAAAGGAACAGCCATCCATGAAATTG
GCCATGCTCTTGgATTCTTTCATGAACAATCGCGACCAGACAGAGATGAT
TATGTGGAAATCATGTGGAATAATATCAAGCCAGGAGACAAATTCAACTT
CGATAAATACACAACAAGAACTATTGATTCGTTGGACACAGAatacGACT
TCCTCTCCATCATGCATTACCGAAATAATGCATTTGCTCTCAACCGAAAA
CAATACACCATAAGGACACGTGACCCCTCTAAACGACGTCTGATTGGTCA
ACGTGATGAACTTAGTAAAATTGACAAGATCCAACTGAATAGGATGTATT
GTGGAGCAACAAGTCAGACAGATGGATACACACGGCCACCAATCAGAACT
CGACCACCAACTACTGAACCCGGATGCGTAGATAACTACGTCAAGAACTG
TCCTGAAATGTGGGCGCACGATTGTGGGCGTTGGTTCGTTCAAAACAATT
GTAGAAAAACATGTGGTGTGTGTACTGAGGGTGGTGCCAAAACAACCCCC
GCCCCACGCCCAACTGAAGCACCCACTACTACGTCCGCAacaaccaaaaa
acCATCCAGTAACTGCAAAGACAACAATGGTAGCTGTCCATCATGGAAAA
TATATTGTGATTCAAATGGTTACGTTAAAAAGAATTGTCTCAAGACTTGT
GGTCGATGCTAGGTTGTATTTTATCACCTCAAATACAGAAGTTGTTGatt
cttaaaggttttctttttacataagtgttcccatttcatatcagatacat
atttcatatcaggacagtgtcttactattgttatattatgctgatttaag
caaaaaaatgtttttcttttcctcttttctgaccaatcttgccccacatc
cgtgtcaattcaatgtgaaaaagcttttgaattaaaattgatgagtaagc
aagcGATATCACCCTTATTTaagaataaaacctttaaatgttAGACAATA
tagatttttgttttatttcttgaaaatataattttcataatttcaagatT
CAGTTttcatgttgttgttgttgtttcgtTGTTTTTTTAC
Run BLAST on NCBI

protein sequence of TCONS_00011313-protein

>TCONS_00011313-protein ID=TCONS_00011313-protein|Name=TCONS_00011313-protein|organism=Clytia hemisphaerica|type=polypeptide|length=403bp
HIIIGATLTKIFLQSLIAFKMENHHLLISLFFLTALVLPGSHVVLGGQPE
EGKFFEGDMMLSPDQLAALTEQRSKRKEGSNTFASIKSSHWKTNGKVDLI
KYYIDEDFNSHGYAIETIKHAIADYEKYTCIRFQQVDRLPSRGPYMHFVL
KGGCFSNVGRNSWGNEISLGYGCWNKGTAIHEIGHALGFFHEQSRPDRDD
YVEIMWNNIKPGDKFNFDKYTTRTIDSLDTEYDFLSIMHYRNNAFALNRK
QYTIRTRDPSKRRLIGQRDELSKIDKIQLNRMYCGATSQTDGYTRPPIRT
RPPTTEPGCVDNYVKNCPEMWAHDCGRWFVQNNCRKTCGVCTEGGAKTTP
APRPTEAPTTTSATTKKPSSNCKDNNGSCPSWKIYCDSNGYVKKNCLKTC
GRC
Run BLAST on NCBI

transcript from alignment at sc0000124:473618..483722-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011313 ID=TCONS_00011313|Name=TCONS_00011313|organism=Clytia hemisphaerica|type=transcript|length=10105bp|location=Sequence derived from alignment at sc0000124:473618..483722- (Clytia hemisphaerica)
CATATCATTATCGGCGCAACCTTGACTAAAATTTTTCTACAGTCATTGAT
TGCTTTTAAGATGGAGAACCATCATCTCTTAATTTCTTTGTTTTTTTTGA
CAGCTTTGGTGTTGCCTGGCAGTCATGTTGTACTTGGTGGACAACCTGAA
GAAGGTAGGTGTGGCATGCATGGTGGCTTCATCGATGATTACACCCCTTC
TCACAAACCCGATAGGATTTTTTTTCAGCCAGTGGGGGTAAAAATAACGG
ACGGAAACTCAATAGGGAGTGATATTCCCATATTTTTTATGGCTGATGAT
TTGAATTCCATTGTTTTCAAGCCAAAAGATTCAGTGAGTCTTGAAAAAAT
AGCACATCATTTTGCAGTGAGGATTTGCTTATCTGACCATTTTCAGTGGG
TCAAAATTAGAGTATAATTTTCCACTGGGGGTGATATTTTGACCAATTTT
TCCAATGGAAAGGGTTCCCAGTGGGTCTGTCAGAAGTGGGTGTATGATTC
CTATCTTACTTTGTCTCCTTTATTTAATCACTGCAAAAGCGATATATGAA
AATTTGAATAAGCTTGATTTTAGTTTCGGAGCTAAGCAATTTTCAATCTG
CATTTCAAAATAATTGAGGAAAAACATTTACCATATATGAAAGTTCATTC
GTTTCATTTGTGGTTTCTATATATCGAAATTCAAAACTACCATTTCGCTT
ATCTTGATTAAGAATTTGCGTAAAAATGAGAGCTTAAAATACAATATTCC
CATCTCCAACTGTAGGCAAAATTTGAGATGATAAAAGGTGACATAATCTA
ATCACCTGACCTGTCTCTTGAATAAAAATTGGAATTTAAATATTGTTCAT
AAAGCTATATTTCCCATTTTTAATTATAGGCAAATTTTTCGAAGGTGATA
TGATGCTATCACCAGACCAATTAGCTGCTTTGACTGAACAACGAAGTAAA
CGAAAAGAGGGGAGCAACACTTTCGCTTCAATCAAATCAAGTCATTGGAA
AACAAACGGAAAAGTTGATCTCATCAAGTATTATATCGATGAGGATTTCA
GTAAGTCTCAAACAATCACTTAAGGGCTACATACACTACACAATATATTG
TCAAGCAATATATTGATGATATATTGCTGAGTTCTGGCAATATATTGAAA
AGTTATCCACAATATATTGTGAGCTCGATTTGCGATTTTCCTAAAACTTT
CATCTATTGATAAAATTCGAGTCTAAAAAGCCTTAAATGGAAATATTTCA
AGACTCGCATCTTATTTCAATTTCTCACACTTAAGTCTTTTTAGCTTTGA
AAACTCTTCCTTGTGTAACCCAATTTAGCTTTGATACACCGCCAGCTTCC
ATGTCCGGGGGTTGCTAGGTTTGCTAGATGATTGGTATGTCCAAGCTCAA
AAATCGACCCTTACTCTGAGTACTACCAGAGTGTATCTCACGTTTATCGC
TTCGTAGTACACTCTGTGCGCATTGTCTGTGTGATAAAAAAATTCCCGTA
CGGAGATCTCTGCGATGAAGTATGATCTATAAATAACAACACTTCTCTCA
CCGTCTCCCCTCTCTCATCAACACTTCATCGCAGCGGTCGGTTTGAAAAA
TCTCAAATGAGAAACAACAATGACAACACAGACCCAGTATATACGACTAA
TTTCAAAATTTATTGCCTCTACGGCAATAAATTTTGAAATTAGTCGTAGA
TACTGGGTCTGTGTACAGACAAATCGACCCTTGGAGAGACAGAAGTTCGA
AAATTTTGTCCAATTTTTGACGTTTTGCCACCCTTATAGAGAGACTATCA
GGGGTTGCACTCTACAATTCCCAATTCCCGGTCGGGGATTACATTAAAAT
TTACATAAGTGTTCCCGTTTCATATCAGATACATATTTCATATCAAGACA
ATGTCTGTCTATTGTTATATTGTGCTGATATAAACAAAAAAATGTTTTTC
TTTTCCTTTTTCTGATCAATCTTGCTCCACATCCGTGTCAATCCAATGTA
AAGAAAGTTGTAAATTGAAATTGATGAGTAAGCAAACGAATTCACTCTTA
TTTACAAACAAAACTTTAAATCTCTACTTTTTTCTTCACCAGATAGTCAT
GGATATGCAATTGAGACCATCAAGCATGCGATAGCAGATTATGAAAAATA
CACATGTATACGATTCCAACAAGTTGATCGATTACCATCGCGTGGCCCTT
ATATGCATTTTGTCTTGAAAGGAGGGTAAGTGGTTCAAAATCTAAATCCC
AAGCGTGTTATTTTCTATTTATTCACTGATAGATATCTTCCTTGGATCCT
AAAATGACCTCAAAGCCTAGAATACACCGGGCGATGTTTTGATTTCCTGT
TTTTTATCTGGCACACAGCGTTGTTTGAACGTTCATCTAACGTTATCTGG
ACGTTGGAATGTACGAGAATAAAAAAGATTGGCTTTCGTTGAACCTTTGT
TTTGTTAACGGGTAAAAAGACGGGCAAGATGGATACTAACTTACTTCGTG
ATACTTCGTTTTTGATTTTGTACTTTTGATACTCATCCAATTCGTGGAAT
CCGATGATTGACCATTACTGATACACTGTTGGAATCAGCTCTCCTGAAGT
TGAAATTATTAGGAAACAGTGGTTCTTCTGAATTGGTCAAGATCCAGATC
ATTGCCTTTTTTACACATCTTAAAATAAGGACAATCTCGTACGCAGCCGT
TTGCCACTTGCATCACTTTTTGATTTTACGAATGGACTTGATACACCTTC
CGTGAGCAGTATTAGAATCATAAAAGAAGCGATGCTTAAAGGGCTATATT
ATACACTACACAATATATTGGCAGACAATATATTGATGATATATTGCTGA
GTGCCGGCAATATATTGAAAGGTGTCTGCAATACATTGCCAGCTTGATTT
GCAATTTTCCAACAATATATATAGGGGGCTTGTTTACGGAAAGAAAATTC
CCTTTTATAATAGAGCGCTTGTTATTTACTTCGTACATTACGGTTCGAAA
ACGATATTGTCGAATATTGTTCGTCAATATATTGTGTAGTCTAAGAAGCC
CTTAGTCCCAAACTACAATGATGTCGAAAATTCTCATTTTCTCTTGTCAA
AGAAAATGATGACAGCAACCGTGAAATTAATTTCTCCCTGGTCCAGAAAT
TGACTCATAAAATTTAGTTTCTCTTAAAAAATGTTCCCTTTAAAAAAAAA
TTATACCCTGAAATGGTCCAAAGTCAAAAATGTCATTCGTTTTATATTGT
TTCAGATGTTTTTCAAACGTTGGAAGAAATTCATGGGGAAACGAAATCAG
TTTAGGTTATGGTTGTTGGAACAAAGGAACAGCCATCCATGAAATTGGCC
ATGCTCTTGGTTAGTAGTCTTATATGCTGACAAAGCAGAAATAACAAAAG
GATTTTTCAAAATCTCGAAAATTGCTCTTTTTGTTTAAAACTTCTCTGTA
AGAAAATGGAAATGGTTGTATTTACGTTTAATTAAACATTAAACATTGTA
CATTGAGATCTTTTTGAGAAAAAGAATTTCGGCATTCGTTGGTTTTCTAA
ACGTAATCTTTTGTAGTGCCCTTCGAAAAACTAACCTGTACAAAACTCTT
CTTTTCTGACTGAAAAGATAACGCTTCGGTTTTTAATGGTTAGGCAACAT
TCCTTGCCTGAGACCTTTTTTGCACTGAATGTCCCTGCGGTGGAGCGTAG
CCATTTTTAGCATTTTACCTCTCCGGGATAGACAGGGAATGAAGGTTATG
ATAGCAGGGGCTATCATATTCGAGTTGTGGGGGTTTGATTAATGAAGAGT
CCACTCTAGTACATAATTCCTAAAGAATAGTTTTTTGGGAATTATGTTTA
CCGATTTTACTGTGGTTTATCTTTTTTCTCTTCTTTTTATTCTAGGATTC
TTTCATGAACAATCGCGACCAGACAGAGATGATTATGTGGAAATCATGTG
GAATAATATCAAGCCAGGTAAACTATCTGATTGGTTGAAACTTTAGAAAA
CGTTCAGATAAACGCTTCTGATTGGCTGAAACTTTCATATAAACATTTCT
GATTGGCTCTCATGAAAACTGACCGAATCCTCTTGATTTTTTGAAATTTT
AAGAACCACGTTCTTTTTACAAAATCTCTGATATTCAATAATATTCAAAC
ATGTCCAAAAAGTTTCAACCATAGCTTTCTAACCTTTCAAAAATACCTTG
AAAACTTGATAAGTTTTTTTTACACATTATTAACCAGCTAAAACATATCA
CATACGAAACCTTTATTCTCTATAAATGTAATAAGCTCCCTAGCGGACCT
TCAATTCACGCAATCACGCAAATCATTTTTCGAAATTCACGCATTCATGC
AATTCATTTTCGAAATTCGTGCAAATTTCACACAAAGTTTTCCAATTCAC
GCATTCACACAGTTTTGTTCAATTTTCACGGATTCACGCAAGTGAAAAAA
CCCATTCATACATTCACACAAACCGCTGGGGTACGTGTTGACGTTCTATT
GAGAACTCTTGACCATTTTCAAATTTCATTCAGGAGACAAATTCAACTTC
GATAAATACACAACAAGAACTATTGATTCGTTGGACACAGAGTGAGTCAT
AACATCCCTTCCCATCTGACACAGAACGTTGTTTCAACGTTGTTCTAACG
TTATATGGACGTTGTGAACGTTAGAAAAACGTCGAAAAAATGTTGTGTGC
CAGCTGGGTTATTTTCTTCAAACTGAGATCCTGGATCCATCACTTTATCA
CGTTTACAAGCATTGGACCTCTAGACTTTGCTACATTTTAAACCACTGTC
CCTGATTCTAATGAAATCAAGCTGTCTCGATCTCTCTCTCCATAATCTGG
AACGAGGCTACACTAATATAGCTTTCCAACAAAGAGTCGATCCGGGTTTT
CTATGAAAAATTAATATTGGCTAACTTAACGGCTCTTTTTACCGCCGGTC
CTTTATTGGTTATTTTTTCGTCGCTGGCGTATTATGGNGTCTCGATCTCT
CTCTCCATAATCTGGAACGAGGCTACACTAATATAGCTTTCCAACAAAGA
GTCGATCCGGGTTTTCTTTGAAAAATTAATATTGACTAACTTAATGGCTC
TTTTTACCGCCGGTCCTTTATCCCTTACCGACGTAAGGGAACGGAACTAA
ATAAGGGCCGGGCTAAAAATGGAAAAGAATTTGAGTTTGGCGTAAGGGGT
AAAAGGTGCCGAGGCTCAATTAGGACTGGTGTAGAAAGAGCTGATAAAGT
ATCACGAATTTATTGTTTAAATTTGTCTTTTCATTTACAATCAACGCACT
CTGATTCGAATCTTCCTGTAATTCAAACAAAAATATTGTTCCCCTCAGCT
GAAAAGGGGTTTAAATTACTACATTACTCTCTGTAATTCGAATCCTTCTA
TAATTCAGAGAAAATCTTTGATACCATGCAGATCGAATTAGAGAGAGTCA
ACTATATTCTTTTTCTTTTCAGATACGACTTCCTCTCCATCATGCATTAC
CGAAATAATGCATTTGCTCTCAACCGAAAACAATACACCATAAGGACACG
TGACCCCTCTAAACGACGTCTGATTGGTCAACGTGATGAACTTAGTAAAA
TTGACAAGGTATAAGAGCCAATCAAAAGTCCAGGATATTTTCTTAAACGA
AGCGAAACTTTTATTTCACACCACTTGAAAGTGTTGAAGTAATGTTACAA
AGTCTACCAAGTCGGCACACAGTTGTTTTTATACATTCGCTGCCAACTAT
GAGTGTACTAAAGCGGCTGAACCATTGAGTTTGAAACCCCGAAGAGGCTA
GAGTGGAATCTTCAACCTTTCTCAAGCAAGAAAAAATGAAGCCCTAAGAT
TTGCATCATATTTAGAAATTTTGTTTGTAAACACACGGGTCACGTGTTCT
GGATGGGAAATAAGTGGTTTCTGAAAGTCAAACTTTCGATGAATTTTGAA
GAAGTCAAATTTTTGATTTCTTAAAAGTGCTCAACAGTGAACGGGTTAAT
CTTCATTTTCATATGTAATAGCGACCATCAAACTAAATGAGTACTAAAAT
ATTAGACAGTGACTGAATTCTGCGGGAAAAAAACTGAGACAGAGCTTACA
GTAGTGGGACTGAGAGGGCTTAAAATTTATGACAGAGAGAGCGTTTCTTT
TAGCCATAATCCTTGCAGTACTCTGTCCTTCCAAAATTTTGAACTTGCCT
CAGATCTAGGCTGCACACATCCCCTATGGCGCGCCAAAGCGGAAATAAAT
ACTATCTTTTTAAAACAATACTATCTTCGTTTAAAACATACTATCTTTTT
TTAAAAACATACTATATTCGTTTAAAACATAGAACATACTATCTTTTTTA
AAACATACTATTTTTTGCTTAAAAAATACTATTTTCGTTTAAAACATAGT
ATCTTTAAAAAATAATATTATTTTTACTATCTTTCATACTATCTTTTTAA
AACAATACTATCTTTGTTGTAAACATACTATCTTCGTTTAAAAAATACTA
TCTTTTAAAAAAATACTATTTTCGTTGAAAAAATACTATTTTCGTTGAAA
AAATACTATTTTCGTTGAAAAAATACTATTTTCGTTTAAAACATAGTATC
TTTAAAAAATAATATTATTTTTACTATCTTTCATACTATCTTTTTAAAAC
AATACTATCTTTGTTGTAAACATACTATCTTCGTTTAAAAAATACTATCT
TTTTTCGAATATACGTTGCCTCGATTATTCAAATTTGTGTAATTTTCATT
TTGAGGGGCGTGTAATGGGCGTTGGTTTTTCGTGTTTATTTTATATGGCC
TCATCCGCCCACATGCAGGACCAACATAACAAGATGGCGTCCGGCTCCCT
ACAAGATCTGACCTGACTCACAGTAAAATGGCTACTCGTGGCAGACCATT
GAAAGATATCAACGAAGACCAAGTCCTTANATAGTATTTTTTTAAAAAGA
TAGTATGTTTTAAACGAAGATAGTATTGTTTTAAAGAGATAGTATTTATT
TCCGCTTTGGCGCGCCATACATCCCCTCTGATATGTTTTGATATAGAGAT
GCTAATCTTATATAACTTTCCCGTCCTAACCTGTTTCAATTTTCTTTAAA
AGGTTTAGAAATCCAAAACTCAAAAATATAAAGACAAAGGTAACTCTCGG
ACGGGATTTCATACACGATACGCATCCCGAATATTAAAATATATCAGAGG
AGACACGCATAGTCTACCTTAGATCTGCAACCGTTGCTTAATGCTCAATG
CTTTTCTTCCTCTTTTCTCAGATCCAACTGAATAGGATGTATTGTGGAGC
AACAAGTCAGACAGATGGATACACACGGCCACCAATCAGAACTCGACCAC
CAACTACTGAACGTAAGACAATACAGAATACAGGATGTCCCAGAAAAAAG
TCCTGTGGCATAACACGACTGCCAATAGAAAAATTTTAAAAACACACAAG
ATTTTGTCCGCTTGCCGTTTTGTTCTGACACAGGACTTTTTTCCGGGACA
CCCTGTCAGTCGGGACCACTACATGGAAACGGCAACTATTGCCTTAACGA
GAAATATTTCCCGAACGGGAAGGTGGAAAACTTCCCGAAATAGCTAGACT
TTCCAAATCGGGAAGTTCACCAGTTTCCCTATCGGTGGCCTCTGAGCACT
CCGGAAATGCCTGTGGAAAGTTTAAAACTTGTCCCTCTTGTAAAGGAGGG
AAAATCAGGTAGTTAAGAAATTCACCGGGTAATCGCTTCTTAATTCTACT
TTCCATCAAAAACTTCCCTATTTGGAAACTTTTTCTTGATCAGGAAACAA
AAATGTGTTTTGTTTACAAAAATTCTATTTCCCGTTCGGGGACGATGAAA
AGTTCTTGACCAAAACGGGAAACAGAAAAGTGATGAAATTTTCAATCTGG
AAACAGTTTCTTTTTCGGGTTATTTCCGTTCGGGAAATATTTCCCGTTGA
GGCAATAATTGCCTTTTTCATGTAGTGGTACCGACTGCCTGTACAGTAAA
CATACCCCTGAAAGTGGAGCATAAAAAGATAAATGGTATGTGCGTGATGT
TTTAAAGATCGGATTTCTCACATTGCTTACTGTAGCCTGTAGGATCGAGA
AACAACGGAAGATTTGTGAAAAAGTCTTTCTAAGAATCCCTTTTTTTAGC
AATTCAGTCTCTCCAAGGGTCAGTCTCCTTAAGGACCACATTTTCAGAAA
AAATCACTATCTCTTAGAGCCGTAGTCAGGGATGGTCATAACCAGTTTCC
TCGGTTGTGGTATCTTATGCCTACTGCCAAAGAACACATTCTATCTTCAA
ATATAATATATTTTTCTTCCATTGGCAGGTTGAAGAGTAAATTGCTGCTT
ATCAAGTTATACCCCTGTCTCACAGCCCCGGTGAAATTCCTATTAAAATC
CCAATGGGGATTTTCTTTGTTCCAAGGTTAAAAAATCCAGTGGGGACCAT
CCCACATTTGGAGTGCAACTTTTAAACATTGGATCTCGAATGGAGATGAA
ATCAAAGTCAAAGTTCCAAGTGGGGCTGAACTTCCAGGGTATTTTCCCAC
CGGGGACGAAATTTTTGCCAAATTTTTCAGTGAGGCTGGGGTCCCGGTGG
GTCTGTGACACAGGGGTGTCAAGTTATAGAATTTATACACTTCTCACTCT
TTTTTTCGTTCTTTAGCCGGATGCGTAGATAACTACGTCAAGAACTGTCC
TGAAATGTGGGCGCACGATTGTGGGCGTTGGTTCGTTCAAAACAATTGTA
GAAAAACATGTGGTGTGTGTACTGAGGGTGGTGCCAAAACAACCCCCGCC
CCACGCCCAACTGAAGCACCCACTACTACGTCCGCAACAACCAAAAAACG
TAAATTATTTTTAACTCCTGTCTAAACTGATGCTATCATGCAGACTCCTT
TGTACACAGTAACTTTATTCTAAATTGAATAGGGCTCCTAGGCGTCCTGA
TTTTAGTAATTAGCATCCTCAGTCAGTCAGGATGTAGATAAAATAGAACC
TTACAGTCTCAGGTGCAAAAAAACATACTCGGTACTAACTTAGAATGGTT
TACCAAAAGGAATATACTAAGTTTTTACTAATTCTTGAGCATATTGTACT
CGCTCCTTGCCCTATTTTCAACAATTCTGTTCTAAATTGTCCTGTATTTT
GGCCAAAAATTGTCTTATAAAATTTCCAAAACATTTGGGATCTTTGAGGA
TATTGCAACAATAATCCAACAATGTGCATTTTTTTTGTACTAAAGAACTT
GAAATCAGTCTTTGCGAATTCTGATAATCTGAATGTTTTTAATTTCGATC
TTACTTCAGCCTCAAATTCTTATAAGATTCTTAGATAAGTGTAATCACAG
ATTCCAGTAAATTGAATGGAGGTGCTTTTAGCTTTTCTAAACAAAAAAGG
TGAATGTCGCAAAAATTATTGTTGCTATTGCTGAAGTACTCTATCTTCTT
CAGGATTTATAGATTTTTCCACAATTTGGCATGCAAATGTCACGTGACCT
AGATAGGATTTCCTATATCTAACCACGGCACATTATTCAACCAAAGTACG
CTATCTAGCTGTTCGGGCTTTATACATTTGTGAACTGTAACGCGAAATTT
TCGACATTTCAATTTAGCATCCAGTAACTGCAAAGACAACAATGGTAGCT
GTCCATCATGGAAAATATATTGTGATTCAAATGGTTACGTTAAAAAGAAT
TGTCTCAAGACTTGTGGTCGATGCTAGGTTGTATTTTATCACCTCAAATA
CAGAAGTTGTTGATTCTTAAAGGTTTTCTTTTTACATAAGTGTTCCCATT
TCATATCAGATACATATTTCATATCAGGACAGTGTCTTACTATTGTTATA
TTATGCTGATTTAAGCAAAAAAATGTTTTTCTTTTCCTCTTTTCTGACCA
ATCTTGCCCCACATCCGTGTCAATTCAATGTGAAAAAGCTTTTGAATTAA
AATTGATGAGTAAGCAAGCGATATCACCCTTATTTAAGAATAAAACCTTT
AAATGTTAGACAATATAGATTTTTGTTTTATTTCTTGAAAATATAATTTT
CATAATTTCAAGATTCAGTTTTCATGTTGTTGTTGTTGTTTCGTTGTTTT
TTTAC

Coding sequence (CDS) from alignment at sc0000124:473618..483722-

>TCONS_00011313 ID=TCONS_00011313|Name=TCONS_00011313|organism=Clytia hemisphaerica|type=CDS|length=1212bp|location=Sequence derived from alignment at sc0000124:473618..483722- (Clytia hemisphaerica)
CATATCATTATCGGCGCAACCTTGACTAAAATTTTTCTACAGTCATTGAT
TGCTTTTAAGATGGAGAACCATCATCTCTTAATTTCTTTGTTTTTTTTGA
CAGCTTTGGTGTTGCCTGGCAGTCATGTTGTACTTGGTGGACAACCTGAA
GAAGGCAAATTTTTCGAAGGTGATATGATGCTATCACCAGACCAATTAGC
TGCTTTGACTGAACAACGAAGTAAACGAAAAGAGGGGAGCAACACTTTCG
CTTCAATCAAATCAAGTCATTGGAAAACAAACGGAAAAGTTGATCTCATC
AAGTATTATATCGATGAGGATTTCAATAGTCATGGATATGCAATTGAGAC
CATCAAGCATGCGATAGCAGATTATGAAAAATACACATGTATACGATTCC
AACAAGTTGATCGATTACCATCGCGTGGCCCTTATATGCATTTTGTCTTG
AAAGGAGGATGTTTTTCAAACGTTGGAAGAAATTCATGGGGAAACGAAAT
CAGTTTAGGTTATGGTTGTTGGAACAAAGGAACAGCCATCCATGAAATTG
GCCATGCTCTTGGATTCTTTCATGAACAATCGCGACCAGACAGAGATGAT
TATGTGGAAATCATGTGGAATAATATCAAGCCAGGAGACAAATTCAACTT
CGATAAATACACAACAAGAACTATTGATTCGTTGGACACAGAATACGACT
TCCTCTCCATCATGCATTACCGAAATAATGCATTTGCTCTCAACCGAAAA
CAATACACCATAAGGACACGTGACCCCTCTAAACGACGTCTGATTGGTCA
ACGTGATGAACTTAGTAAAATTGACAAGATCCAACTGAATAGGATGTATT
GTGGAGCAACAAGTCAGACAGATGGATACACACGGCCACCAATCAGAACT
CGACCACCAACTACTGAACCCGGATGCGTAGATAACTACGTCAAGAACTG
TCCTGAAATGTGGGCGCACGATTGTGGGCGTTGGTTCGTTCAAAACAATT
GTAGAAAAACATGTGGTGTGTGTACTGAGGGTGGTGCCAAAACAACCCCC
GCCCCACGCCCAACTGAAGCACCCACTACTACGTCCGCAACAACCAAAAA
ACCATCCAGTAACTGCAAAGACAACAATGGTAGCTGTCCATCATGGAAAA
TATATTGTGATTCAAATGGTTACGTTAAAAAGAATTGTCTCAAGACTTGT
GGTCGATGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006339XLOC_006339Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011313-proteinTCONS_00011313-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011313-exon-sc0000124-1575043694:483569..483722TCONS_00011313-exon-sc0000124-1575043694:483569..483722Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1575043694:482673..482843TCONS_00011313-exon-sc0000124-1575043694:482673..482843Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1575043694:481498..481630TCONS_00011313-exon-sc0000124-1575043694:481498..481630Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1575043694:480364..480467TCONS_00011313-exon-sc0000124-1575043694:480364..480467Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1575043694:479756..479827TCONS_00011313-exon-sc0000124-1575043694:479756..479827Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1575043694:479132..479189TCONS_00011313-exon-sc0000124-1575043694:479132..479189Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1575043694:478115..478250TCONS_00011313-exon-sc0000124-1575043694:478115..478250Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1575043694:476361..476451TCONS_00011313-exon-sc0000124-1575043694:476361..476451Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1575043694:474874..475056TCONS_00011313-exon-sc0000124-1575043694:474874..475056Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1575043694:473618..474105TCONS_00011313-exon-sc0000124-1575043694:473618..474105Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1510915933:483569..483722TCONS_00011313-exon-sc0000124-1510915933:483569..483722Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1510915933:482673..482843TCONS_00011313-exon-sc0000124-1510915933:482673..482843Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1510915933:481498..481630TCONS_00011313-exon-sc0000124-1510915933:481498..481630Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1510915933:480364..480467TCONS_00011313-exon-sc0000124-1510915933:480364..480467Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1510915933:479756..479827TCONS_00011313-exon-sc0000124-1510915933:479756..479827Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1510915933:479132..479189TCONS_00011313-exon-sc0000124-1510915933:479132..479189Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1510915933:478115..478250TCONS_00011313-exon-sc0000124-1510915933:478115..478250Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1510915933:476361..476451TCONS_00011313-exon-sc0000124-1510915933:476361..476451Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1510915933:474874..475056TCONS_00011313-exon-sc0000124-1510915933:474874..475056Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1510915933:473618..474105TCONS_00011313-exon-sc0000124-1510915933:473618..474105Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1491911889:483569..483722TCONS_00011313-exon-sc0000124-1491911889:483569..483722Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1491911889:482673..482843TCONS_00011313-exon-sc0000124-1491911889:482673..482843Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1491911889:481498..481630TCONS_00011313-exon-sc0000124-1491911889:481498..481630Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1491911889:480364..480467TCONS_00011313-exon-sc0000124-1491911889:480364..480467Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1491911889:479756..479827TCONS_00011313-exon-sc0000124-1491911889:479756..479827Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1491911889:479132..479189TCONS_00011313-exon-sc0000124-1491911889:479132..479189Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1491911889:478115..478250TCONS_00011313-exon-sc0000124-1491911889:478115..478250Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1491911889:476361..476451TCONS_00011313-exon-sc0000124-1491911889:476361..476451Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1491911889:474874..475056TCONS_00011313-exon-sc0000124-1491911889:474874..475056Clytia hemisphaericaexon
TCONS_00011313-exon-sc0000124-1491911889:473618..474105TCONS_00011313-exon-sc0000124-1491911889:473618..474105Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000124supercontigsc0000124:473618..483722 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.976216	0.886382	0.378181	0.564693	0.674219	0.383951	1.02522	0.896703	1.02018	0.42904	1.25852	0.444842	33.548	32.4351	0.540653	0.608716	52.1282	67.7211	160.74	147.685	226.214	223.236	37.694	51.6014	94.9376	94.9699	0.327352	0.16837	0.485187	0.603114
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001506Peptidase_M12A
IPR003582ShKT_dom
IPR006026Peptidase_Metallo
IPR024079MetalloPept_cat_dom
IPR034035Astacin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00011313 vs. Swiss-Prot (Human)
Match: MEP1A (Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 7.710e-32
Identity = 73/174 (41.95%), Postives = 95/174 (54.60%), Query Frame = 1 
Query:  349 TIKHAIADYEKYTCIRFQQVDRLPSRGPYMHFVLKGGCFSNVGRNSWGNEISLGYGCWNKGTAIHEIGHALGFFHEQSRPDRDDYVEIMWNNIKPGDKFNFDKYTTRTIDSLDTEYDFLSIMHYRNNAFALNRKQYTIRTRDPSKRRLIGQRDELSKIDKIQLNRMYCGATSQT 870
             I +A   +   +C+ F+  +       Y+ F    GC+S VG    G  IS+G GC  K    HEI HALGF+HEQSR DRDDYV I W+ I  G + NFD Y    I  L+T YD+ S+MHY+  +F  N    TI  + P    +IGQR + S ID  +LNRMY   T+ T
Sbjct:   94 AILYAFEMFRLKSCVDFKPYE---GESSYIIFQQFDGCWSEVGDQHVGQNISIGQGCAYKAIIEHEILHALGFYHEQSRTDRDDYVNIWWDQILSGYQHNFDTYDDSLITDLNTPYDYESLMHYQPFSFNKNASVPTITAKIPEFNSIIGQRLDFSAIDLERLNRMYNCTTTHT 264
The following BLAST results are available for this feature:
BLAST of TCONS_00011313 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEP1A7.710e-3241.95Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE... [more]
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