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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011383 ID=TCONS_00011383|Name=TCONS_00011383|organism=Clytia hemisphaerica|type=transcript|length=1570bp
aaaagaacagGAACCACAAATTTGGTGGATGGCAAAACATAATGGCGTCC
AATATAAGAATGTTGTCAATCATCAAGATGGGAACAAAGAATTATTCAAC
TTTCACCAACATGACCAATCTGACATCAGCAAAAATCTACGAAGAAACCA
GTACACatgagaaaattttaattcaaacaaTTGCAACCATCGGCTCAATA
CAATGCGGAATGCTATTGGTCACCATTTTAACATGTCCCGCATTACGTAA
AAAGATTACGTATGTTTACGTCATTAATTTACTATTGGCGCAACTTCTTT
TGTCCACTGTCACGGTACCGATGTATTGTTTTGCACCACACCACATCCTA
TACCCTTATATTACAGCGTTGACAATCATAGCCTATATTTTGAATCTTTG
TACTGTATCTTATGAACGTTATCTCGCTATTTGTCAACCCTACTTCTATG
CAGAACGAATATCATATTCAAGAGCCTTAAAAACATCAATCGGATGTTGG
ATAATCGCTACAATCATGCAGATTTTACCGATCTTTTGGGAAGATCATCC
AGCCGCTATCTTAATACATCATATCTATCTCGGTATTACACTCATATTAT
TTTTCATAGTGCCCCTTCTAATGATATGGTTAGTATACGGTTACATATCT
TACGAAATTTATCATctaagtaaaaaatcaaaactgttaACTCAATTCTC
AATTGAACTTGTACCGACAGCCGAAACCCCGTTAAACGGACACCATAAAG
ATAAAGAGGACTCGACTAAAGGACAGCGAAAGAAAAGCTACCTATCAACT
ATATCAACTCGGTTCCGGCGTAAAAGCATCACAAAACCTAGACAAGAGAT
ATCACTTGCTATGGTTTTTATCACCGCAGCTATCGCGTCAAATATAGCCT
GGGTACCAGTCATTCTAATGGTTTTTCTCCAAGTAATCGACAGGACTGAT
TTGGAGCCTCGAAATATAAGTAAAATTCATATCTATCTATTGGCTATTAA
TGCGAATATAGATCCTCTCATTTATGGGTTGTTTCTGAAACCATTACGGA
AGAGACTGATCAATTTTATCATTATTCCAACATTTAAAATCATACGGAAG
GGACTTGCAAGGAGCCAGCAAGAAAAACCAAGGACCACAAGTCATTCTTC
AGCAGTTAATGTTTGAGCGAAAAATAGAGTGAACTTatgtaaataaatat
tttaataagtggatttttgcttatttttctctaattcgaacttctgtaat
tcgaatctttctctaatatAATCGttctttgaaaatcgaattaaacaatt
tcataatcttTCTATAGTCGAAAACGTtcgaatattttcattttattctc
aTTGTAAATATATTATTACACTATACACATATGATTTTTAATGTGAAAAC
TGAGAAGGTAAAACTAACAGCAAGGTCCAGAAGttttctgtaatttttca
aGACCCGATGAATGTGGGAGATTTTTGCATTCCACAAGGGAAAACATCCA
CAAAGGAAGACCTTTGCAAATCGATGAATTGTAGATTTTGtactaatttt
tttgaaaaagaaaagagaaa Run BLAST on NCBI transcript from alignment at sc0000127:204218..212579- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011383 ID=TCONS_00011383|Name=TCONS_00011383|organism=Clytia hemisphaerica|type=transcript|length=8362bp|location=Sequence derived from alignment at sc0000127:204218..212579- (Clytia hemisphaerica)
AAAAGAACAGGAACCACAAATTTGGTGGATGGCAAAACATAATGGCGTCC
AATATAAGAATGTTGTCAATCATCAAGATGGGAACAAAGGTAAGATCAAA
AATTACTCATTTTTTTAGGAACAAAAAAAATGTAGCTCAAGTTTAACTAT
TCTTATTCCCTTAAAAGCTATCAAGGTTATTAGTCATCAAAAAAGAATCT
AGATGACCCAAAAATACAAGCTATTCAAGGTTAAGTTTTCCGGGTCCGTC
CGAACCTTGCTGGTCTAATCTGATTTTTTTTCATGAAAAAAGCGTATTTT
CCAAAATCAGGAGTGAATGTCAATCAATGTGTCAATGATGAAATTTATAG
TGTTAAAGGTCCTAAGTTTGCTCTTTAATTCAATCTTGGTGGTAAGCTAA
AGAAGCGTCTTCCCTTAAGATCCCTTAAAAGAAAAACTATTCCAGATCAT
CATTGTTTTCACACATTGTGTGTGAAAACAAACGGTCCGACGTCTGACGT
TTAAGCTAAAGTAAAACCTCCAATTAACGGACACTCTAAAAGGCGGACGA
CTCTGATTAGCGGAAAATTCTATTTTCCCCGGCCATTTCCTAGTCAAATC
CTCATAAAAAAGTTTTCAAAAAGCAGACACTCAATTAGCGTACCCTCCAA
TTAGCGGAAAAAGTTTATTTTCACGAAATAGCCAAAACCCTGCCTTTTTC
TCTCTAATTACCGGACATCGACGGTCAAACTGGTCATAGACTTAAAAAAA
TTAGACACGATTGATTTATCCAACCTATTTACTTCTTAAACAATTCAAGG
TTTCATTGAACAAATCGCTTGTAGACGTTTGGAGCGCTCCCTTTATCCTG
TCGGTGAATTTGCTTGCATCATAAAAATGATAAATTATAGGGACCTTAAG
ACAACTTTGATTCATAAAAACTAAATTGCTGCATTTGGACAGTTATTCTC
TTGTTCTTTAATTTCCTAGTGTCTCTAGAAAAACACTTGGAACCGAAATT
TTACATACTCAACGCCTTAATAGTACCTTATACCAAGATTAGAGCACAGA
ATTGAAAAGTTTCTTCTAAAAGGTGGACACTTCNCAATTTTCTAGTGTCT
CTAGAAAAACAGTTGGAACCGAAATTTTACATACTCAACGCCTTAATAGT
ACCTTATACCAAGATTAGAGCACAGAATTGTAAAGTTTCTTCTAAAAGGT
GGACACTTCTAATTAGCGGAAACTAACCCTATTTCCCAATGGTGTCCGCT
AATTGGAGGTTCCACTGTATCTAGATTTCGTAAGAACCTTTGACTAAAAA
AGACTGACCGCAACAAAGCATGATTGTGTTGAAAGAGGGCACCGTATTAG
GAAAAAAAATCATTTTTTACAACTAGGCACTAAACAAAATTAACTATTTT
CTTCAGATGGTCAATTTTCAAGCGCCTTCAGAGGTTTACAGTGACCATCT
GTTATCAAGTTAGATGAAGGTTATCTAGCCAAAACAGACTGTAAAACCAG
GGGCATTCCAATATCAAGTAATTTAATATTGGGGTGTCTAGGTTACCTGA
TAATAAAAGGAAAATTAAGAGCAGTTAAAGTCAAAAGAATTGACCTCAAA
TCTCGAAGGGCTGGACCCAAAACTATTGGATGGGAAATGAAGCAATTTAT
TTTCACTTTTTCTTGCTTGAGAAAGGTTGAAGATTCCTCTGCAGCCCCTT
CGGGGCTTTAAACTCAATATGGTCAAACGTTTTTTTACTGATTCATGTGA
CAAAAGGCCGGCCGAGGCTGGTGCATGAGTAACCATAATTATGAATCATG
AATCTCGTAATTTATGACTCACCTAATGAACTTGTTTTTTAGTCACCTTA
AAAATCCGCTAAGTGATTTCATCGGATTTCACAATACTTTATAGGTAAAA
AAAACCGACTAAAAGGTTTTTATGTAAATTGTTATTGAGAAGAAGGGGCA
GGGGGAGGGCTAAATATATGCATTTAAGTTGACATAGACGTTTTTCATAA
AAACATCCAAAATTTTTGAAGCCTTCGGATGTTCTTAACTTTTCGAGTTT
TAAGCCTAAAAATTGTTCTTAACATGTTCGTATTTTGACCATTTTCCTAA
GAAATAGGGTGTTTTTGAGTCCACAAAGCCTTAAAATGTTCTTAACTTGC
TCTTAACATTTTGGCCAACGAAGCCTTATGTTCTTATATAGTTTGTTCTT
ATAAAAACGTGTACTTTTAAGGAAGTTTGCCTTGAATTATTGATAAGAAG
GTAAAAAAGAAAACAAAAACAATACAGTACCAAAGTATTCGCTATTGAAG
AAAATGGGAACTGCATTTTTTCCTTTTTTATTAATATTATTTTTATTGTT
CTTCTTCTTTTCACATATTACAATATAATACCAAAATTTTTAGTAGCGTG
ATTACTAGCAGTTGACAATGAAGCGTCTTGGTGTTAATACACAGAGATAG
AGTTTGTGAAGAAAACAAGAAAAAGAAAAAATAGGGTAGAATTTATCACC
ACTGATAACAGAGAGGAAAAGAAGTAACAAATTCAATGAAAATGCGATAA
TGAGGCGATAACAAAAATAACAACAGCAGAATTTGTTATCTAAGTCATTT
GTATTTGTCATTTGAAACAATTTTATTGGGTCGTTTCGTATTTTTAAATA
TTGGTAAGTTTTATATTAATAATTATACAGCCTTTGGACTTCTTGTATTT
AAAGACCCTTCTTTGTCTAGAAACTTGAGGATACAAGTGACAAAATCTCC
AAAATTTTAATCGTGACATATTTCCAGGCCCGGCGGAGCAACTGTAAAAG
TGGGGAGGCTGAAGGCTCAAAATGAGATAAAATTCACTGGGAATTCGAGA
AAAATGTCATTTTCTTAAAAGGCTCCCCAGTCTCCCCGCTTCTGCAAGAC
GCTATATTGGGCAAGAGTTACACCCCTGTACCAGATTTTCAGTTATAATA
TGAAGTGATAAAGGATAATGACCTGAATTAATAAATATGGAAAGGTTGAT
GGGAGGTGTCGGGAAAGTTCCAATGTTTAGACCTGAAAAACTGTGAAAGC
ACAGTGTGCATCTTTTCGATGCAAATGAAACATCAGGGTGATTTTCATCG
AAGGCAATTTTTTTGACCAGATTTTAATTGGGTTCCGGGTCCCATCTGGA
CCGTGACACACTATGGTCGGATACAATAATTCTTTGAATCTGATATCGAT
GATGTTTAAGGACTTTAAGGCATGAAATTATGCAAAAAAAAGAGTAAAAA
ATCATTCTAGAGTGCAAATATGAAAGAACTCGTGTTATGGTAAAGTTCCC
TTGATATCTTGATATCTTAAGCACTAAAGTTCATCTCTTCATGATCTTCC
CTAAAAACAGAAGGGCCTAAGCCTTCTTTAGACTGTATTGAAGACTTAAG
CAGGAAAAATAACAGGAAAGAGAAGACTTTTGAGTCTGACAGAACAAAAG
TATCATGATCTACATGAATATGTTTCTTGGAAAATCACCTTTTTAAATGA
GAAATTTCATTAGGTGCGGTCTTTTACTTTAATATTGTTGCTTAGATTGA
NATTTCTTGGAAAATCACCCTTTTAAATGAGAAATTTCATTAGGTGCGGT
CTTTTACTTTAAATATTGTTGCTTAGATTGAATTTAATACAAACTGAAGA
CTTGCCTGAAGATGATCGGATGATTTTCATTTGTGATGAAACTATAGATA
AAAAGCCTTAAAAAAGCATTGTTTAAAAATTCATCCTAAATCATATAAAT
GCCTGGGCCTTTACTGTATCTGACGAACGGAATCAACCTTTAGTGCTAGA
AAATCCATTTTTGGTAAAGAGGTACTTTAAACCCTCCTGTTTGGCAAGCA
AAACAAACTTTCGTACCCAGGGGGGGGGGTACTTAGGAAAAAATGGATGA
TGGGTATGTGCGGACGGTAAGGGTCGATTTTTTCACCTTTCAAAGTCGGA
AAAATCAGAAAGTTTTAAATCAGTCTCTCTAAGGGTCGGTTTTCGGAGGT
CCCGTCCACACATACCCCTCATTCATCAACCCTAGTACCCCTGGTTTGAT
ACACACTTAAAATGGACTTTAGATTGAACATCTGTAAAGAAATGTAATGG
AAGAAAGGTTAGTGGAAGGGTGGAAGAAACTTTTAGAATTTACCTCAATC
CTTATCAAAAAACTTTAAGTTTTTTAAGTTATGAAATACAAAAATAGAAT
CATCAACAAAATAAAGAATTATTCCATATAATCTTTAAAAGAAATTGTTT
GGAAAAATAAATTAGTTTTGGAGATTTGTACGAAACTCTTCCTATAAATA
GTCAGAATAGATAATCGATAGAAACCGATAAAATTACTAAAGATCGAAAG
AATTTAAATGGGTTAAAAAGGGGGACTCATTCTTGACAGTAGCTATACCT
GTTTATTTTTTTTCAACTTTTTACTAGGAAAGTTGACAAAAACAAATGTT
AGAGCATCGAGCCTTGTGTGAAAATTGACATGCGTGGTTCGGTTTTCCTC
AAAAAATATATATTATATTTTACGCTTAAATGAAATAATAAAAAACAAAG
AAAACTTTTTCGGAATCGATCAGGGAAAATGATGACTCTAGTTTGTTGTT
GTGTGCTTTTTGCAATGGTAAATAGACACATTTTTTTTTACAAAAACATC
CAAAACTTTTTGAAGCCTTTGGATGTTCTTAACTTTTTCAGTTTTAAGCG
TAAAATGTAAAAATGTTCTTAACATGTTCTTGTTTTCGCCATTTTTTCTG
AGTATTTTTGTCCATTTTCTTAAGAAATTGGGTGTTTTAGAGTCCGCGAA
GCCTTAAAATGTTCTTAACATTTTGGCTATCGAATCCTTATGTTCTTATA
TAGTTTGTTCTTATAAAAAAAACGTGTAAGAGCAAGTGTGTTACAATGCT
ATTTTAGAGCCCACTTAATTCAGTTTCTACCTTTCTTTTGAGCTCGCATC
TTTCATAGTAGGGGTTATATCTTATGCAACTTAAGTTAGTTCCAAAAAAA
ATGCAAGATCGTACTTTTTTAAACATTCCTCGCGAGGGGAAAAAGATATA
CTTTAATCGTAGAAATTTTAGCGAGACTAATTTTAGCATATATTAGCGAG
TCAGGAAAATCTAGATTTTTTTGGATTTTAGCGAATACTCGTATTACATT
ATTGACTGAATTCGTTTTCTAGCATTTCTTTGCACAGAAACCTTTCCTAT
TGATAAAAATGTATCAAGGCAATATAGCCAGAAATTTCGCGCGGATAAAC
TTTAGCGATCTTTTGTCGATTCGGCATGTTTTAGCGAGATTTATTTTAGC
GAAAATAGGGAAAACTCGCTAAAACGCAAAAATTAGTCTCGCTAAAATTT
CTACGATTAAAGTAGCTTATAGTAATACCTTGTTGGACAAGTAATTTTGA
AAAGATTGATATAAGATTTGCAGAATTTCTACAACCTTCCTAAAGAGGTT
TAAATGGGCGATAAATTGCTATCCATAGTCGAAATGGCCTATTGCAAGGG
GTTAATATATTTTTGGAATAAACTTTAGTAAAAGTGAGAAAAGGAAGGAT
TGGCATCAAAAACAAAGGCTTGAGGCAAAAAGAAAGTATGGAAAGACATT
CCATCTTACCCACAATGTATAAGAATGAATCTGCTCAAAAATAGAAGTGA
AATTAACCCAGCTGGCATGTAACGTCATATGGACGTTGTGAACGTTAGAT
AAACGTTGAAACAACGTTGTGTGCCTGCTGGGAAGCTGATTCTGATGTTT
TGTAAAAACAAGGATATTTTGTAAATCAGGAGTTACTCCAGACATTAGCA
TAGATAATAAAACATAAAATCTTGCAAAAATACACAGGCTGCAAAATAAA
AAGTCTGAAGATAAATCACGTTTTTACTCATAATCTTTATGCACTTGTTA
CGTGAGGGACATTTACCTTATAGATAGGGGGAAATTTGTAAAATCGCTCG
ATTTTTTTATCGAGTGGCGAGTATAGGTGATTTCAGTACCTAACTCGCAA
TATATCACTAATCTTAATTTTTTGAGAGCTTTCCTAAAATATACAACAGG
TCTCCGTTTTCTCAAGCTAAAATTTTCATTAATTTTTCACCCTATGATTT
TTGCCTGAGACCGTCGTATTTGTCCGAAAATCACACCANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ACCAAAGTGTCCGAAAAAAAATTGGCACCCAAGTTATTTTGATTCCCCTA
CCCCTTAGCTTTCCAAAAATGTATAACAAGTGCTTTGACTAAAAAAGTTG
AGCGACCTCAAAACGAACAAATTTCCCCCTACTATTAAGGGAACTAATTT
TTGCGGGATCTAAATTTTGCAGTTATTGCGGATTTATGCCCAAACCGTAA
AATCAAGTTCCGCAAAATTTTTCAAATGCGAAAAACAAAGGTCGAATAAT
TCACAGTACGGCTCTAATTTTCTTTCGAGTGAGAAATCCGCAAAATTAAG
TTCCCGCAAATATTAAATATTAAATCTTGAACTGCGAAACGCAAAAATTA
GTTCCCGCAAAAAAAAGTTCCCTTAAGGTATTTATTGATTGGTTGGAATT
TATTGACACTAATAAAGTTATCAGCTGTAAGCTGTAAAGCAAGTAACATG
GGCATACAATCACATGTTTTGATAGCCTATACTAGATGTCACCCGCGTTT
TTTCTACGCAATTAACGGGATGAAAAATCTCGGTTTTTAGTGAGGTATTC
GCTAGTGGTTTGACTGCATTGATAAATTTTTGCAACCCATGTATTGTAAA
TATTTATTTAATATTTTTCTCTTCTCCATAGAATTATTCAACTTTCACCA
ACATGACCAATCTGACATCAGCAAAAATCTACGAAGAAACCAGTACACAT
GAGAAAATTTTAATTCAAACAATTGCAACCATCGGCTCAATACAATGCGG
AATGCTATTGGTCACCATTTTAACATGTCCCGCATTACGTAAAAAGATTA
CGTATGTTTACGTCATTAATTTACTATTGGCGCAACTTCTTTTGTCCACT
GTCACGGTACCGATGTATTGTTTTGCACCACACCACATCCTATACCCTTA
TATTACAGCGTTGACAATCATAGCCTATATTTTGAATCTTTGTACTGTAT
CTTATGAACGTTATCTCGCTATTTGTCAACCCTACTTCTATGCAGAACGA
ATATCATATTCAAGAGCCTTAAAAACATCAATCGGATGTTGGATAATCGC
TACAATCATGCAGATTTTACCGATCTTTTGGGAAGATCATCCAGCCGCTA
TCTTAATACATCATATCTATCTCGGTATTACACTCATATTATTTTTCATA
GTGCCCCTTCTAATGATATGGTTAGTATACGGTTACATATCTTACGAAAT
TTATCATCTAAGTAAAAAATCAAAACTGTTAACTCAATTCTCAATTGAAC
TTGTACCGACAGCCGAAACCCCGTTAAACGGACACCATAAAGATAAAGAG
GACTCGACTAAAGGACAGCGAAAGAAAAGCTACCTATCAACTATATCAAC
TCGGTTCCGGCGTAAAAGCATCACAAAACCTAGACAAGAGATATCACTTG
CTATGGTTTTTATCACCGCAGCTATCGCGTCAAATATAGCCTGGGTACCA
GTCATTCTAATGGTTTTTCTCCAAGTAATCGACAGGACTGATTTGGAGCC
TCGAAATATAAGTAAAATTCATATCTATCTATTGGCTATTAATGCGAATA
TAGATCCTCTCATTTATGGGTTGTTTCTGAAACCATTACGGAAGAGACTG
ATCAATTTTATCATTATTCCAACATTTAAAATCATACGGAAGGGACTTGC
AAGGAGCCAGCAAGAAAAACCAAGGACCACAAGTCATTCTTCAGCAGTTA
ATGTTTGAGCGAAAAATAGAGTGAACTTATGTAAATAAATATTTTAATAA
GTGGATTTTTGCTTATTTTTCTCTAATTCGAACTTCTGTAATTCGAATCT
TTCTCTAATATAATCGTTCTTTGAAAATCGAATTAAACAATTTCATAATC
TTTCTATAGTCGAAAACGTTCGAATATTTTCATTTTATTCTCATTGTAAA
TATATTATTACACTATACACATATGATTTTTAATGTGAAAACTGAGAAGG
TAAAACTAACAGCAAGGTCCAGAAGTTTTCTGTAATTTTTCAAGACCCGA
TGAATGTGGGAGATTTTTGCATTCCACAAGGGAAAACATCCACAAAGGAA
GACCTTTGCAAATCGATGAATTGTAGATTTTGTACTAATTTTTTTGAAAA
AGAAAAGAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011383-exon-sc0000127-1575043694:212491..212579 | TCONS_00011383-exon-sc0000127-1575043694:212491..212579 | Clytia hemisphaerica | exon |
| TCONS_00011383-exon-sc0000127-1575043694:204218..205698 | TCONS_00011383-exon-sc0000127-1575043694:204218..205698 | Clytia hemisphaerica | exon |
| TCONS_00011383-exon-sc0000127-1510915933:212491..212579 | TCONS_00011383-exon-sc0000127-1510915933:212491..212579 | Clytia hemisphaerica | exon |
| TCONS_00011383-exon-sc0000127-1510915933:204218..205698 | TCONS_00011383-exon-sc0000127-1510915933:204218..205698 | Clytia hemisphaerica | exon |
| TCONS_00011383-exon-sc0000127-1491911889:212491..212579 | TCONS_00011383-exon-sc0000127-1491911889:212491..212579 | Clytia hemisphaerica | exon |
| TCONS_00011383-exon-sc0000127-1491911889:204218..205698 | TCONS_00011383-exon-sc0000127-1491911889:204218..205698 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000127 | supercontig | sc0000127:204218..212579 - |
Blast
The following BLAST results are available for this feature:
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