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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011398 ID=TCONS_00011398|Name=TCONS_00011398|organism=Clytia hemisphaerica|type=transcript|length=1601bp
TATTTTTATGCGAAAAGATTGGTTACATGTTTAAAATGGTCACTAGGATC
GAATCTTTGTAGAAGCTTGCACTATTTCAACGgGAGCAGAAGAAATGGTT
GCCACAAAGAAATCACAAACTACACTCTGGATTTATTTGTATCGTTGTTC
GAAACTCGGGCCTCGTTCTTTATGGATCAAACAATCGAATTGTGTCTTAG
AAGAACTAACCAGAACGATATGCGATAAAGCGATTCGTCATCGAATGACA
AAAGCCTCTATCGATCATTCTCCGATCAAAAGTCCGAAACTTTACGAAAC
GCCGTCCGAGAAAACAATGCAATGCGTAAAAGATATGATTGATTTGATAG
TCTCTTCACATCCGGAACTCTATACGGAAATCACATTCAAGTTAAACATA
CCGGTTCAAGACGAACGGACTGTATGCAGGACGTATAGtgaGTTTGCTGA
GAATCTGTTCAAGCGAGGAGTTTCATGGCCGCTCATCATTTCATTGTTGT
CGTTTTCTGGAAGTCTAGCAGCGGAGTGTACGCGGAACGGGCGGAGTATT
TTAGTACGGCGTATTTGTGATTGGGCAACGTTATTTATCGTGATGAGACT
GAAAGATTGGATACAAGATAATGGCGGATGGgatgGAATGTACGAATTCT
TTTACCAGCCTACACTCAACAATAATAGTGTGTTTCCTTCAGATAAACTC
CAACAATTAAATGAGTGGAAAATCGCCATTTCCAATGCAGTGAAACCTGA
AAAGGCTGCTCGTTTTGCACTGGGATTTTTCATATTCTTAGCTTTGTTAC
TAATAACATTCTTTAAAAGCACATCAACAGAGTGCAAATCTGGAGGCGTT
AGAAGCAAGTTTAGTATTTATAGAGACTGTTAAGTAGTGATTTTGAGCCA
TCTGAGTTATTAGAGTTATCGAATTAGGAATATTCCTTTTCTTGAATGAG
AATCACAGAAGGAGATCAAACTTGTTGCAAAATGGCGATCAATTTCCATG
TTGTTATTGGCTTTTTGCTTGTTAGATAATTTATAATTATTTCTGGTAAA
TTGTTGACAAACATTCTTCCAGGTAAAGAATGCACTTTTCTTAAACAAGA
TGCACACCGGGAAAAAGATTTACCGTGGCACTTTGGATGAATTTCAAGGT
GAAAAGCTgcattcttttcttttgataatTCTCAATCCCGGGGGGGGGAG
CACTCGATTTCGAAACGACGGTATGTGTCGCGCAAAATCTGCTTTTCAAA
ATCGCACCCTAACAGTGCAGTTCAATATGGCTGAAAAGGTACCCTTGCAG
TGCATTTTCTCTTGATTTCCCAACCCTTATAGTGCACTATATTTCTCAGC
TGTAAATCTGCGTGAACGAAGAAGCTTGGGAAATTTTCTGTTTCAAAGAA
AAATTGAGAAAATTATTCTTGTCAGCTGTAATTATCAGACAATAGAAAAT
TTTTCAAACAAATGAGAAGTAAAAACCTTTCTTTTTAACAATTATTAATT
TGTTTTAAAATTCGACCCTTGAAACACATCCTTACAGTGCATTTTGGGAT
GCTGGAAAACCCCACCCTTAAGCGCGGCACATGACGTAAGCCAGATCATA
T Run BLAST on NCBI transcript from alignment at sc0000127:456234..459676- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011398 ID=TCONS_00011398|Name=TCONS_00011398|organism=Clytia hemisphaerica|type=transcript|length=3443bp|location=Sequence derived from alignment at sc0000127:456234..459676- (Clytia hemisphaerica)
TATTTTTATGCGAAAAGATTGGTTACATGTTTAAAATGGTCACTAGGATC
GAATCTTTGTAGAAGCTTGCACTATTTCAACGGGTAAACTTTTATATTTT
TGAAAGATCTACCGTACGTCGAATACTTAGAATAAGTATTGGAGTTACAA
CGTCATGAAAATTAAGGAACTTGTAAAACATATTTTGAATTAGATTTTCT
ATTCCTCAACTTTTTGTTTGAAAAAGAGGTTTAGGGAATAACCCTGCTTA
CAGCTCTTTAATCTTGAATGCTTAACAAAGAGAATTTTGAAATCTGATGT
TGTGAAAATGTTTGTCATTGGGCGGGAATCGCTCCCACAATCAATCAGTA
AGGGAACCAATTGACTTTATCTCCATGACGTCCATATAACGTTTGAGTAA
ATGATTTTGATATTTGGTACCCCACGAAATCAGGAAAGTTAAATTACTCT
AATCAACAATTATACAATTGACCCGGAAGAACTGTATACTGGATCACTAA
TTATATCGATAATTGCGTGAAGCATGTGCCAGTCGTAGATCTTTTTCTCT
AGTGTTTGACTTTGGTTTGTTTTAGTTTTGATTGTTTTTCTTTTACTTTT
CTCATGTGCTTTGACGTAGTTAAAATGTACAATTAAACAATGGGAACTTA
GGGAGTCTTCTTTTCAAGATTCTTTATTTATTAGGTGATAAAAATTTGGG
CATGGTTGAACCTTTGGGCGTGGCCCTAGCATGTGCTGTATATGTAGCGA
AACGAATATTATAATAAAATAGCTTGTATTTCAGTGATTTCCATTATTTC
ATTGTCGACTACGAAAACATTTAGGAAAATATCAAAACATCTTTTCATGG
AGAAAAGCCTTGCTCTAAATCTAATATAAACTTAGGAAAAACTGTTTTTG
GCTCCTGTCTGAACCTTTTTGCAATGCTTTACACGTCTCGTAGTTAATTT
CAGTAACAACTTTCAAGATGTGAAAAGAAAAAACTTTGACAATTTATGTT
TTTGTTCGTTCTCAGGAGCAGAAGAAATGGTTGCCACAAAGAAATCACAA
ACTACACTCTGGATTTATTTGTATCGTTGTTCGAAACTCGGGCCTCGTTC
TTTATGGATCAAACAATCGAATTGTGTCTTAGAAGAACTAACCAGAACGA
TATGCGATAAAGCGATTCGTCATCGAATGACAAAAGCCTCTATCGATCAT
TCTCCGATCAAAAGTCCGAAACTTTACGAAACGCCGTCCGAGAAAACAAT
GCAATGCGTAAAAGATATGATTGATTTGATAGTCTCTTCACATCCGGAAC
TCTATACGGAAATCACATTCAAGTTAAACATACCGGTTCAAGACGAACGG
ACTGTATGCAGGACGTATAGGTGAGCATCATTATAAAGACCACACCCATA
CATTTATTGCCCCCCCCCCTGTTGTTTTGAAACTATATTGAACAATTCTA
GTGGTTTGTTTTGAGTCATTTCTAACTAATATTTCGTTTCGTATAAGGGA
TCTGTAGCATGTAAGCTTGGTCAAAGTATTGTCTAACCAAAGGTATATAG
GTGAAATGTCGTTGAAAAACATTGAGCTGTTTAGGTGTTGACTCTCTTTA
AACTGGAGACGGAGCAAAAAAAAAACATTTAAGGGCGGAGTTTGAATCGG
GTGGAGATTACAGGAAATAAAGACACATCCGAGAATATTCATATATTCTT
ATAGGTTGCACTTTATAGCCGAAGTTGCATTTTTAGCATATCCATTCCCA
TTCATTTTATTTTAGTGAGTTTGCTGAGAATCTGTTCAAGCGAGGAGTTT
CATGGCCGCTCATCATTTCATTGTTGTCGTTTTCTGGAAGTCTAGCAGCG
GAGTGTACGCGGAACGGGCGGAGTATTTTAGTACGGCGTATTTGTGATTG
GGCAACGTTATTTATCGTGATGAGACTGAAAGATTGGATACAAGATAATG
GCGGATGGGTGAGTTTAATGATATTCGTATTTCATATTTTTCGCCCTTTT
TTTCCTATAACGGGCACAAATCGCAAAACAATTTCAAGTTGCAAGACTTT
CTGTCTCCACTTTCACGCGAAATGGGCGACAGTTTTTTTCTTAACCTTTT
TTGCCTGAAGAAAAATTTATGACATAAAAAAGTTTCGCGCGAACAAAAAA
AAGTTGCCTTCAACTTTTTTCAACCGTTACGTCAATGTTGACCAGTGGAA
TTGCTTCATTTTTCAACGGACCAATGACCTTACAAAAACTTTAAAAAGTT
TTTGCTCATTTCGCGCGAAAGTGGAGACCGGCCTTATTACCAAATCAACT
AATCAGTGACATAGAAAGTAATTTGATTATTGAGCAAATTTTGGAGCGTT
ACGTTAACAGGTAACTTCGATAGTTCATGACCAATTTAAATCAGCGGGAG
TTTTTTATGGACTGGTCTACAGTTAAATTCTTTATGGCAATTTTCTAAGC
TTTTGTTTAATTCCCTTTTTTAGGATGGAATGTACGAATTCTTTTACCAG
CCTACACTCAACAATAATAGTGTGTTTCCTTCAGATAAACTCCAACAATT
AAATGAGTGGAAAATCGCCATTTCCAATGCAGTGAAACCTGAAAAGGCTG
CTCGTTTTGCACTGGGATTTTTCATATTCTTAGCTTTGTTACTAATAACA
TTCTTTAAAAGCACATCAACAGAGTGCAAATCTGGAGGCGTTAGAAGCAA
GTTTAGTATTTATAGAGACTGTTAAGTAGTGATTTTGAGCCATCTGAGTT
ATTAGAGTTATCGAATTAGGAATATTCCTTTTCTTGAATGAGAATCACAG
AAGGAGATCAAACTTGTTGCAAAATGGCGATCAATTTCCATGTTGTTATT
GGCTTTTTGCTTGTTAGATAATTTATAATTATTTCTGGTAAATTGTTGAC
AAACATTCTTCCAGGTAAAGAATGCACTTTTCTTAAACAAGATGCACACC
GGGAAAAAGATTTACCGTGGCACTTTGGATGAATTTCAAGGTGAAAAGCT
GCATTCTTTTCTTTTGATAATTCTCAATCCCGGGGGGGGGAGCACTCGAT
TTCGAAACGACGGTATGTGTCGCGCAAAATCTGCTTTTCAAAATCGCACC
CTAACAGTGCAGTTCAATATGGCTGAAAAGGTACCCTTGCAGTGCATTTT
CTCTTGATTTCCCAACCCTTATAGTGCACTATATTTCTCAGCTGTAAATC
TGCGTGAACGAAGAAGCTTGGGAAATTTTCTGTTTCAAAGAAAAATTGAG
AAAATTATTCTTGTCAGCTGTAATTATCAGACAATAGAAAATTTTTCAAA
CAAATGAGAAGTAAAAACCTTTCTTTTTAACAATTATTAATTTGTTTTAA
AATTCGACCCTTGAAACACATCCTTACAGTGCATTTTGGGATGCTGGAAA
ACCCCACCCTTAAGCGCGGCACATGACGTAAGCCAGATCATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011398-exon-sc0000127-1575043694:459594..459676 | TCONS_00011398-exon-sc0000127-1575043694:459594..459676 | Clytia hemisphaerica | exon |
| TCONS_00011398-exon-sc0000127-1575043694:458307..458661 | TCONS_00011398-exon-sc0000127-1575043694:458307..458661 | Clytia hemisphaerica | exon |
| TCONS_00011398-exon-sc0000127-1575043694:457719..457911 | TCONS_00011398-exon-sc0000127-1575043694:457719..457911 | Clytia hemisphaerica | exon |
| TCONS_00011398-exon-sc0000127-1575043694:456234..457203 | TCONS_00011398-exon-sc0000127-1575043694:456234..457203 | Clytia hemisphaerica | exon |
| TCONS_00011398-exon-sc0000127-1510915933:459594..459676 | TCONS_00011398-exon-sc0000127-1510915933:459594..459676 | Clytia hemisphaerica | exon |
| TCONS_00011398-exon-sc0000127-1510915933:458307..458661 | TCONS_00011398-exon-sc0000127-1510915933:458307..458661 | Clytia hemisphaerica | exon |
| TCONS_00011398-exon-sc0000127-1510915933:457719..457911 | TCONS_00011398-exon-sc0000127-1510915933:457719..457911 | Clytia hemisphaerica | exon |
| TCONS_00011398-exon-sc0000127-1510915933:456234..457203 | TCONS_00011398-exon-sc0000127-1510915933:456234..457203 | Clytia hemisphaerica | exon |
| TCONS_00011398-exon-sc0000127-1491911889:459594..459676 | TCONS_00011398-exon-sc0000127-1491911889:459594..459676 | Clytia hemisphaerica | exon |
| TCONS_00011398-exon-sc0000127-1491911889:458307..458661 | TCONS_00011398-exon-sc0000127-1491911889:458307..458661 | Clytia hemisphaerica | exon |
| TCONS_00011398-exon-sc0000127-1491911889:457719..457911 | TCONS_00011398-exon-sc0000127-1491911889:457719..457911 | Clytia hemisphaerica | exon |
| TCONS_00011398-exon-sc0000127-1491911889:456234..457203 | TCONS_00011398-exon-sc0000127-1491911889:456234..457203 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000127 | supercontig | sc0000127:456234..459676 - |
Blast
The following BLAST results are available for this feature:
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