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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011405 ID=TCONS_00011405|Name=TCONS_00011405|organism=Clytia hemisphaerica|type=transcript|length=371bp
TTTGGTTTGGATAGATTTTAATGTCGGAGCAGAAGAAATGGTTGCCACAA
AGAAATCACAAACTACACTCTGGATTTATTTGTATCGTTGTTCGAAACTC
GGGCCTCGTTCTTTATGGATCAAACAATCGAATTGTGTCTTAGAAGAACT
AACCAGAACGATATGCGATAAAGCGATTCGTCATCGAATGACAAAAGCCT
CTATCGATCATTCTCCGATCAAAAGTCCGAAACTTTACGAAACGCCGTCC
GAGAAAACAATGCAATGCGTAAAAGATATGATTGATTTGATAGTCTCTTC
ACATCCGGAACTCTATACGGAAATCACATTCAAGTTAAACATACCGGTTC
AAGACGAACGGACTGTATGCA Run BLAST on NCBI transcript from alignment at sc0000127:458317..465043- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011405 ID=TCONS_00011405|Name=TCONS_00011405|organism=Clytia hemisphaerica|type=transcript|length=6727bp|location=Sequence derived from alignment at sc0000127:458317..465043- (Clytia hemisphaerica)
TTTGGTTTGGATAGATTTTAATGTCGGTAAGAAATATTAATTTGTTTTTT
TCTCTTGGATGTATCTGTAACCGAGAAGCTTGATTTTTGCTTCTTATAAA
GTTTTAGAACCCAGTCTTATTAAAGAAGATAGGTTCTAAACACCCCCTTC
TCACAGAACCCACTGGGAACCCTTCCAACTGGAAAGATTGACCAAAATAT
CGTACTCGGTTGATAATTATCCTCCAATTTTTATCCCCACACTGAAAATA
ATCAAATAAACCAATCCTCACTGCAAAATATTGACCTATTTTTTCCATCC
CCACTAGATTTTCTGACAAAAGAACTTAAATTCCCAGACATAACAGTATG
GGTATGTATGTTTCAGTCCGTTATTTTTAGGGTAAGGGGTAAAAACTTTT
ACGTTTATCATTGGGTATAAGTATGTAGTCACCATAATCTCCATTGCTTG
AGCGTAATGTTTATGTTTATGTTTCTTTTCTTTAAAGTTGATGCAAAGTA
GTACAGTGTGTACTTAGCTCGAGGCTAATCAATATCAACTATTAATTACA
AATCTATCTAGAAAGTTGATACTCAAGATCAACTATTATTTACAAATTAA
TTTAAATTCAATCGATAAAACCAACGCCATGGATAAAGGTGCGACAGGTT
CGGCAAGGACAAGTAGTGGGCCTCAATTGCATTGACTTCTTTTTTAAATT
CATCTAGGTTTTTAAGTTTTTAAGTTTTTAAGTCATCGGGAAGGGTAGCC
CAGATTTTAGGTCCCAGGAAAGCTAAAGACGATTTTCCATTCATTTCACT
TTCAACTACTCTACTACGAAAGAAATTTCTTTTTCTCGTTTTGATCTTAC
ATTGGTTTTTGAGAAAGATTTTACTTTCTGATTCATTGAGTTTTGATTTA
AATAGCTCTGTGGCCTCTGTGGATAAGGATTGAATTGCTCGTTGATGGAA
GGTGGAACCGTTGTCAAGTTTCAACAGATCTTCGAAAGATGTTGTAGTCT
GAGTAAACGATTCTCAAGCATTTTTTATGTAGATTGTTGATTTTATCCTC
TAGAGCCCTGCTATGAAACATCCATATGAGAGGACAGTAATTGAAGTGGC
ATTTAATGAAAGCATTCATTAAGCGTTTCTTTTTTTCTAAACTGAGATAT
GTGCTCATTCTGGCTGAGGTGGTTATTTTCAAACTAGCTTTCTTGCAAAG
ATTTCCTATATGCGATTCAAATGTCAAAAGATTATCGAAGGCCCGGGGGA
CATTCCAGGTAAGTGACCTACCGGACGTGCGGCCCTTAAGGGTAGGTTTT
TTGGACTTTGGAAAGTGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTTTGTGAGCAAGTGGGAAAAAGTG
CACTGCAAGGGTGTAAAATTTGAGAAAATACCAAATTTTGAGGTAAAATT
TGAGAAATTTCAAAAAAATTTGCCCTGAAATTGCACTATAAGGGTCGATT
TTCAGCCAAATTTTGTGAAGTGTTATTGTTGGTTTTCTCTTCGACGAAAC
TTCCTGAGGCCGTAACCGTCTTTTGAGTTTCCCCGAACGCGGTGTACCCA
TTCAGTATCGTCTAGGTTCAGATTATTTGCTTTATGCAGCCATTCCTTTA
GAACTGCTCTTTCAGTTCGAGTCAGGTCTTCCGTAATGCTTATTCCTTTA
TAGTCGTCGTTTCCTTTGAGGGCTGACAGGCTGTGATGGAGGGATAACTT
TTCTTTTTCTGAACCAAGGACAAGTTTCATTGGCCTCTTTTTGTTGGTTT
CCTCGGTACCGATTCTTGATACGTTCTTTATAGTTGGAGGTGGAATTTTT
ACCGTCTTGATGTGGCTTTAACAATATACCTTTTATCACCCTCGTTTTTT
ATCTTCACCAGTCCATTCAGCAACTCCATAGATGACGACATTTCTTTGCC
GCTGGTCATGGTCTTTTTTTTCTTTTATCTCTTCGTAGCGAGCCTCTTTT
ATAATGGACTTTAAACCGCTTGTTGTTACTTGAGACGTAATTTTTGTTGC
GTCAGCGTAGGACGTTTTGGCTTTGGTCAAGGATGACTGGATTTCTTCTA
GAATTGAAGATTTAATTGTCTCGCCAAAAGTTTTAAATTGCTCTTGAATC
TTCTTGTCTAAAAAGGAAAGCATTGAGCTGTCTAATTGTTTTGAAAACTA
GAAACTCGAAACTCTGNTTGAGTGTAAAATTCAAAAGGAAAGCCTTGGCT
TGAGCTGTCTAATTGTTTTGACAACTAGAAACTCGAAACTCTGAGGAATT
GCCTCGTGTAGCGAAAGCAATTAAAGTTTTTTAATGTTTTTTAATGTGCC
TCGCGGTAGATACAAGTCAAGTTTCCATATTAAAGTTGTCTTTGTTTTGT
TACTTTATGAGAATGATAGAAAGTCGGCTGTGGTATTCGTGAGGACGTTT
CAAAGTTTCAAAGGTTAGTTCTATTTTTTTAGTCTTCAAATTTCTGCAAT
GGATCGAAATCGGAACATCTTTTTTAATCGATAAAAAGAGATCGTCAATT
TTTTTTACGGTTTCATGGTTTACGTAATGTTTTTCTGATTAGACCAGAGA
CACAGCTTGCCATCCTGGTAAGTCGGTAGACTTCACTTAGTCCTCCATGT
TAAATGATGCAAGACTAAGTAATAGAAAAACGAGCGATTTACCCCTATTT
ACGCCCCACCCCCGTTTTAATCTCCACAATAAGTCCGTGTGTAAGAACGG
TTTTTGATGATGAGATATTCGGGAAGTTTTGAGTTTCTAGGCCTTGGGAA
GGCACTCTTGCAAAATTGAATTCACGTAGTGTATTTCTCAAATCCGACGA
TAATCAAGAAAATTTTTTAAAATAACTAAGAGACTTTGTAATAAAGAGGA
AATCATTTCATGCTATTTTATAGCTGCTAAATGAGACTCATTTATTCTAG
CGCTAATTTATTTCACCAACAACCTTTCGACTGGATAATTATTGTCCCTT
TTTTCCGTGATTATAACTTTTGAGATAATGTTGATGTTTTTATTCGCCGA
AGTTCCTAATGTTTATATTTTAGATTAAGTTGCATTCTAACCTCCATTAG
AATCTCGCTGAAAGAAAATGAAGGCATATTTTTAATCGTCAAGGGTTCAG
ATTTTTTTTCTCTCAATCTCGAGCAGTTTTCATTGAGAAATGCAACAGCC
TGAAGACATTTTTAACGGCGATTCTTTTATTTTCATTTTCATTATTTGAT
GACAATTAAAGCTGAGAAAATTTTATTATCCACTGTGAGAAATTTCAAGT
TTTTCCTCTTCTCTTTATTTTTCAATTTTTAGGATTAAAACTTACGCCAT
TTGATTATACGTCGGTAACTTTTGCGTAAGATTTCACGTGTTAAAGATGC
TTTAATAGGTTGTTGAGGAAGAAAATCATTTCGTTTTTGTGTAGACATTA
TAGCCAGGCAACCAGTGGGTAGCCTGGTAGCAGAACGTCTCTTTTTGAAA
TGAGAGAAGTTAAACATATGAAATGAAAGGAAAATTTTATTTTGCATTAT
GTTCTTTATGCAGTTTTACTAGTCGTAAAGGAGAATTTAACGTGACGGTT
TTCAAATGAAAGATCCGTAGGAGGAAAGAAAGGAAAATTTTTTTTTTGAG
AGGAAGAATAATTTTTTCGTTCCAATTCGAAGAGAAGACAAAATAACCTA
AATTCATATAAGGAACTGTCACTTTTTTCTTGTTTTTGTGAATTTTATTT
ATCATTCTTTTCCGAGTATCAAAGATGATATCTATAGCTAGGATCTCACA
GTTGTCAGTTGTAAAATACTGAATGAATATAACCATTTTATTCTTGATAT
CGGAAGGTTTATACTACACTCAACGTTTATTGATTTTTATTTTACTTGGT
TTTGACACTTCAAAAAATATTTATTGAATCGACTATATTCATTATTTGCA
TTTCTGAATAAGGAAATCCGAACGATCTTAAAGATTGAAACTTGAAATCC
GAAATTAAATTTTACCGAGTTGACGGAAGAAGAAAAGAATGGACGAAGAA
ATATTCCTTCGACAGAAACGCAAAAAATATCGTTTACGAAATTTCAATCT
TCGAAGTAAGAACATATGGTTTATTCGTCTTTGAATTGTTTATTTATATG
AAGTCTTGGTATGGAAGAAATTAGTACAGGCGACTCTCTCTATTTCGATT
TTCAAGGGACAGAAAATCTTTTCCGAATTATAGAGATCTTCGAAATACTT
TCCTGCTGAAAGGGAGCGACGTTTTTTGCTCGAATTTTAAAAAGATTCGA
ATTAAAGAGACTCGCGGAATAGAAGAGAGTTGACCGAACTTGAAGCCATT
TGGAGTTCTGAACTTTTAAACTCAACGGTATGATAAATGTTCAATGTTCA
ATGTTCAAATTTTAGCAGAACTCGAAAAATTCTACAAAACACGCTTTTTA
TATAAGAATACCTACACTTTATAAGAATGTCCAATATGAAAATGGCCAAA
AAACTAAGAATAATGCTAAGAATATCACCATCATGGAAGTTTGCTACTCT
AGCTAAGAATGCCATTTTTAGAGCATTTTCGATTATAAATTGTCAATTAC
CCCCAAGACGCCAAGTAAGGCTCATTTCTTTCCCAAAATTGCCATTTTAT
GGTTGAGAAGTATGTACTAAATGTTAAATCTAGTCTGAATTGGGATCCTA
TAACCTAAGAATGCTGTAAGAATATTTTAGGATGATTTCCCAAAAAAGNT
AAGAATATTTTAGGATGATTTTCCCAAAAAAGTTAAGAATATCCATGATG
AAATGGATTTACACCATTCTTATAAAAAAAAGCGTGTAACAAAACCATAG
TATTTTTTAGCTGGGATGTTTGCTAACAGCGTTTGTCTTCCGCCTAAATC
TTCTCTTAATTTGATAAAACTTTGGCTTATAATCTTAATTGTTTTTGTTG
AAAATGGTTAAAGGGAAATGGATTTCATGATGGAAACCATTTAACAAAGG
TACCAGCACATTAGAGATCGTGAAAGTACTTCCATGTTCCATAAGGAACT
CTATTTAATATGTACTCAGTCGTGCTGTTCTAAATCAAGCAAGCCAAACG
ATATCTCGTGGTTGCTCTTGAAGGGACAGATGAAATAGAAAAGACATTTT
TACTAATAGGTACGAATTATTTTTATGCGAAAAGATTGGTTACATGTTTA
AAATGGTCACTAGGATCGAATCTTTGTAGAAGCTTGCACTATTTCAACGG
GTAAACTTTTATATTTTTGAAAGATCTACCGTACGTCGAATACTTAGAAT
AAGTATTGGAGTTACAACGTCATGAAAATTAAGGAACTTGTAAAACATAT
TTTGAATTAGATTTTCTATTCCTCAACTTTTTGTTTGAAAAAGAGGTTTA
GGGAATAACCCTGCTTACAGCTCTTTAATCTTGAATGCTTAACAAAGAGA
ATTTTGAAATCTGATGTTGTGAAAATGTTTGTCATTGGGCGGGAATCGCT
CCCACAATCAATCAGTAAGGGAACCAATTGACTTTATCTCCATGACGTCC
ATATAACGTTTGAGTAAATGATTTTGATATTTGGTACCCCACGAAATCAG
GAAAGTTAAATTACTCTAATCAACAATTATACAATTGACCCGGAAGAACT
GTATACTGGATCACTAATTATATCGATAATTGCGTGAAGCATGTGCCAGT
CGTAGATCTTTTTCTCTAGTGTTTGACTTTGGTTTGTTTTAGTTTTGATT
GTTTTTCTTTTACTTTTCTCATGTGCTTTGACGTAGTTAAAATGTACAAT
TAAACAATGGGAACTTAGGGAGTCTTCTTTTCAAGATTCTTTATTTATTA
GGTGATAAAAATTTGGGCATGGTTGAACCTTTGGGCGTGGCCCTAGCATG
TGCTGTATATGTAGCGAAACGAATATTATAATAAAATAGCTTGTATTTCA
GTGATTTCCATTATTTCATTGTCGACTACGAAAACATTTAGGAAAATATC
AAAACATCTTTTCATGGAGAAAAGCCTTGCTCTAAATCTAATATAAACTT
AGGAAAAACTGTTTTTGGCTCCTGTCTGAACCTTTTTGCAATGCTTTACA
CGTCTCGTAGTTAATTTCAGTAACAACTTTCAAGATGTGAAAAGAAAAAA
CTTTGACAATTTATGTTTTTGTTCGTTCTCAGGAGCAGAAGAAATGGTTG
CCACAAAGAAATCACAAACTACACTCTGGATTTATTTGTATCGTTGTTCG
AAACTCGGGCCTCGTTCTTTATGGATCAAACAATCGAATTGTGTCTTAGA
AGAACTAACCAGAACGATATGCGATAAAGCGATTCGTCATCGAATGACAA
AAGCCTCTATCGATCATTCTCCGATCAAAAGTCCGAAACTTTACGAAACG
CCGTCCGAGAAAACAATGCAATGCGTAAAAGATATGATTGATTTGATAGT
CTCTTCACATCCGGAACTCTATACGGAAATCACATTCAAGTTAAACATAC
CGGTTCAAGACGAACGGACTGTATGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011405-exon-sc0000127-1575043694:465018..465043 | TCONS_00011405-exon-sc0000127-1575043694:465018..465043 | Clytia hemisphaerica | exon |
| TCONS_00011405-exon-sc0000127-1575043694:458317..458661 | TCONS_00011405-exon-sc0000127-1575043694:458317..458661 | Clytia hemisphaerica | exon |
| TCONS_00011405-exon-sc0000127-1510915933:465018..465043 | TCONS_00011405-exon-sc0000127-1510915933:465018..465043 | Clytia hemisphaerica | exon |
| TCONS_00011405-exon-sc0000127-1510915933:458317..458661 | TCONS_00011405-exon-sc0000127-1510915933:458317..458661 | Clytia hemisphaerica | exon |
| TCONS_00011405-exon-sc0000127-1491911889:465018..465043 | TCONS_00011405-exon-sc0000127-1491911889:465018..465043 | Clytia hemisphaerica | exon |
| TCONS_00011405-exon-sc0000127-1491911889:458317..458661 | TCONS_00011405-exon-sc0000127-1491911889:458317..458661 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000127 | supercontig | sc0000127:458317..465043 - |
Blast
The following BLAST results are available for this feature:
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