TCONS_00011417 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011417
Unique NameTCONS_00011417
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length509

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011417 ID=TCONS_00011417|Name=TCONS_00011417|organism=Clytia hemisphaerica|type=transcript|length=509bp
TTAAAACGTCCACGGAGTAAAGTAAAATCTATTGCACGATTTCGAAAAAT
GGGCTGTGTCAAAACAAAATAAGCGTTAAAGTTCGATCCGAGTCTTGTTA
CGTCGATTGCTCTACTTTATACTAAATTTCGCTAAGTAAATAAAATGGTA
TATATTAAAATGAATACGGAGCCAACTTTGAATATCATACTTAATAAAAC
TATCCAACAGCTTTTTCATGACGTAGTGGATGATTACCAAGGTATTCTCA
GCATCGTTTAAAAGGTCTCTGAGCAAGCATTTTATAAAATCCTCAAATAC
tgaaaaagttatatttttttctgaagcTTTCGAGATCCGTTCAATAGTAT
CTTTCAAAAAGGGTAGAAGATTATGTAGCCAACTTTGTACACACCGTTCA
CTTCGAGTCGGATCAAATTGATCTATATTATCCAGATATTCTAAAATGCA
TTTTCCAGCATAAAATCTGAATTGCTTTGAAAGTATTTTGTCAGATTTAG
GGGTTTCCA
Run BLAST on NCBI

transcript from alignment at sc0000127:395576..396084

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011417 ID=TCONS_00011417|Name=TCONS_00011417|organism=Clytia hemisphaerica|type=transcript|length=509bp|location=Sequence derived from alignment at sc0000127:395576..396084 (Clytia hemisphaerica)
TGGAAACCCCTAAATCTGACAAAATACTTTCAAAGCAATTCAGATTTTAT
GCTGGAAAATGCATTTTAGAATATCTGGATAATATAGATCAATTTGATCC
GACTCGAAGTGAACGGTGTGTACAAAGTTGGCTACATAATCTTCTACCCT
TTTTGAAAGATACTATTGAACGGATCTCGAAAgcttcagaaaaaaatata
actttttcaGTATTTGAGGATTTTATAAAATGCTTGCTCAGAGACCTTTT
AAACGATGCTGAGAATACCTTGGTAATCATCCACTACGTCATGAAAAAGC
TGTTGGATAGTTTTATTAAGTATGATATTCAAAGTTGGCTCCGTATTCAT
TTTAATATATACCATTTTATTTACTTAGCGAAATTTAGTATAAAGTAGAG
CAATCGACGTAACAAGACTCGGATCGAACTTTAACGCTTATTTTGTTTTG
ACACAGCCCATTTTTCGAAATCGTGCAATAGATTTTACTTTACTCCGTGG
ACGTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006403XLOC_006403Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011417-exon-sc0000127-1491911889:395576..396084TCONS_00011417-exon-sc0000127-1491911889:395576..396084Clytia hemisphaericaexon
TCONS_00011417-exon-sc0000127-1510915933:395576..396084TCONS_00011417-exon-sc0000127-1510915933:395576..396084Clytia hemisphaericaexon
TCONS_00011417-exon-sc0000127-1575043694:395576..396084TCONS_00011417-exon-sc0000127-1575043694:395576..396084Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127supercontigsc0000127:395576..396084 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.201454	0	1.1541	1.81986	0	0	4.68793	4.0155	1.08475	1.97239	3.68212	5.66587	2.27019	3.46116	0	0.133732
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011417 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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