|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011434 ID=TCONS_00011434|Name=TCONS_00011434|organism=Clytia hemisphaerica|type=transcript|length=1472bp
CTCAAGCATCtttctattttataaaaaatccaGCTCATATTTAAAAATGG
GAGATCAAGATACAGACCCTTTGGTCGAGGGCTTGGTGAACATACTGCGA
CCAGCCATCAATGATATTGATACAAATGTAGCTAATACACGAGAAAGTCA
ACTGGTTCTTCGACAATAAATTGACACCCTGACAgaagaattacaaaaat
tagCAGCTTTACAAAAACCACCTGTAGACCTTGACCCTtacatcaaaaaa
cttttaaattgcAGACGAAAAGTGACAATTGTGAATAGTATATTACAGAG
CACACAGGAAAGACTGAATAAACTACAACAAAATATTGTGCGTGAGACAA
ATAGGAAAAAGACACTTGCTGAGTCACCTGGatctatttgaaaatttttt
gggatGTTTAATTATATATTTCTTATCATTTCTTATCTTTGTAATTCTAA
ATTCTTAATTTATAATATCTTCGTAATTAGGcatatacttttttattttc
tgttttacGGAATCACCGACGTTTTTTTTGCAAGCatagaataaaaataa
aattggattttacaaatattttatttatttatgctCTTCTTACCTTGTAC
TGAACAGCCATAAAAAGGAGACTTCCAGGTCTTTAATAAGTTAAACACAA
TTTCCCTACTAAAAACGTACTTTAATGTATGTAAGTTttctcaaaacata
ttttttaaattttctccaacattaaagtttgaaaagagcaattttatttt
tatttttttccatcctccagTCCAAAAGATTATCTTCGAATGtctgtaaa
ccagaaaataaaaaaatgtagtatttccagaatgcgggtgaaggaaaaaa
gctctgatgcggccggccggaaaaagattttttttgcttttaacgaacaa
aacttgatttacaagcgggaatatctaaccaaacaaCGTTTGATAGCTTA
AAcagtcaacttgattttctttatgatggccgggtcagaaaaattatttt
tttcaaccggttggtttccggaaacactacatttttttattttcgcctta
gaataattatttcaaaaatatctgaaatattgtttcgaaaatttgaacaa
gaattgAATAACCTATTATTATTGAATTTTATCGGACAAAACAATCACAC
TAAAATGGATCGATCAGAATGCAGAGGTAGAGAGGCTTAATTTATGCCTT
ATCCAGTCAGTTTTGGAGTTCAGTACAGAGCTATTTTGTATGTAAGATTT
CTCATTCTAATTTCATTGGGTCAGAATAAAAGTAAATGAATAAATAAGAA
TCTTTATTGCTAGCTTTGGGACTTGTTTGCCTCCACCAAAGTGTTGCTTA
GCAAGATCGCAAGGAGGCGGTCTGTGTTCAGGCTTTTGATTAAGGTTCCA
AAaagtttttgcaaaaatttaagTGCAAATCAATTTTCTATCACTGTTAT
TAGTCAAATTAACCTCTCTTCT Run BLAST on NCBI transcript from alignment at sc0000128:94355..95826+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011434 ID=TCONS_00011434|Name=TCONS_00011434|organism=Clytia hemisphaerica|type=transcript|length=1472bp|location=Sequence derived from alignment at sc0000128:94355..95826+ (Clytia hemisphaerica)
CTCAAGCATCtttctattttataaaaaatccaGCTCATATTTAAAAATGG
GAGATCAAGATACAGACCCTTTGGTCGAGGGCTTGGTGAACATACTGCGA
CCAGCCATCAATGATATTGATACAAATGTAGCTAATACACGAGAAAGTCA
ACTGGTTCTTCGACAATAAATTGACACCCTGACAgaagaattacaaaaat
tagCAGCTTTACAAAAACCACCTGTAGACCTTGACCCTtacatcaaaaaa
cttttaaattgcAGACGAAAAGTGACAATTGTGAATAGTATATTACAGAG
CACACAGGAAAGACTGAATAAACTACAACAAAATATTGTGCGTGAGACAA
ATAGGAAAAAGACACTTGCTGAGTCACCTGGatctatttgaaaatttttt
gggatGTTTAATTATATATTTCTTATCATTTCTTATCTTTGTAATTCTAA
ATTCTTAATTTATAATATCTTCGTAATTAGGcatatacttttttattttc
tgttttacGGAATCACCGACGTTTTTTTTGCAAGCatagaataaaaataa
aattggattttacaaatattttatttatttatgctCTTCTTACCTTGTAC
TGAACAGCCATAAAAAGGAGACTTCCAGGTCTTTAATAAGTTAAACACAA
TTTCCCTACTAAAAACGTACTTTAATGTATGTAAGTTttctcaaaacata
ttttttaaattttctccaacattaaagtttgaaaagagcaattttatttt
tatttttttccatcctccagTCCAAAAGATTATCTTCGAATGtctgtaaa
ccagaaaataaaaaaatgtagtatttccagaatgcgggtgaaggaaaaaa
gctctgatgcggccggccggaaaaagattttttttgcttttaacgaacaa
aacttgatttacaagcgggaatatctaaccaaacaaCGTTTGATAGCTTA
AAcagtcaacttgattttctttatgatggccgggtcagaaaaattatttt
tttcaaccggttggtttccggaaacactacatttttttattttcgcctta
gaataattatttcaaaaatatctgaaatattgtttcgaaaatttgaacaa
gaattgAATAACCTATTATTATTGAATTTTATCGGACAAAACAATCACAC
TAAAATGGATCGATCAGAATGCAGAGGTAGAGAGGCTTAATTTATGCCTT
ATCCAGTCAGTTTTGGAGTTCAGTACAGAGCTATTTTGTATGTAAGATTT
CTCATTCTAATTTCATTGGGTCAGAATAAAAGTAAATGAATAAATAAGAA
TCTTTATTGCTAGCTTTGGGACTTGTTTGCCTCCACCAAAGTGTTGCTTA
GCAAGATCGCAAGGAGGCGGTCTGTGTTCAGGCTTTTGATTAAGGTTCCA
AAaagtttttgcaaaaatttaagTGCAAATCAATTTTCTATCACTGTTAT
TAGTCAAATTAACCTCTCTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011434-exon-sc0000128-1491911889:94355..95826 | TCONS_00011434-exon-sc0000128-1491911889:94355..95826 | Clytia hemisphaerica | exon |
| TCONS_00011434-exon-sc0000128-1510915933:94355..95826 | TCONS_00011434-exon-sc0000128-1510915933:94355..95826 | Clytia hemisphaerica | exon |
| TCONS_00011434-exon-sc0000128-1575043694:94355..95826 | TCONS_00011434-exon-sc0000128-1575043694:94355..95826 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000128 | supercontig | sc0000128:94355..95826 + |
Blast
BLAST of TCONS_00011434 vs. Swiss-Prot (Human)
Match: SNAPN (SNARE-associated protein Snapin OS=Homo sapiens GN=SNAPIN PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 6.607e-27 Identity = 54/116 (46.55%), Postives = 77/116 (66.38%), Query Frame = 2
Query: 50 GDQDTDPLVEGLVNILRPAINDIDTNVANTRESQLVLRQ*IDTLTEELQKLAALQKPPVDLDPYIKKLLNCRRKVTIVNSILQSTQERLNKLQQNIVRETNRKKTLAES----PGS 385
G D EGL+ LRPA+ +D++V RESQ+ LR+ ID L EL ++ QK +DLDPY+KKLLN RR+V +VN+ILQ+ QERL +L ++ +ET R++ + +S PGS
Sbjct: 18 GPTGRDLFAEGLLEFLRPAVQQLDSHVHAVRESQVELREQIDNLATELCRINEDQKVALDLDPYVKKLLNARRRVVLVNNILQNAQERLRRLNHSVAKETARRRAMLDSGIYPPGS 133
The following BLAST results are available for this feature:
|
