TCONS_00011439 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011439
Unique NameTCONS_00011439
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length542

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011439 ID=TCONS_00011439|Name=TCONS_00011439|organism=Clytia hemisphaerica|type=transcript|length=542bp
CGCCAAAATTGCAACCGAAAGTGGCGGCagacgaaatttttcaaaaaagc
tatCGTGTATCAAGGCGAGCACATTCTCGTTCCCTTCTTCTGGTCTGCCT
TCCAAAAAAATGGCAGATGTAAGGAAAGATGAAAAAACTAACATTCAAGT
TGGTATACGTGTTCGTCCATGTATCAAAAGGGAACTTGAAAGCCACAAAA
AGATTGTGATGAAAACCAATGAAAATAGAATTTTCAGTACAGCAAATGAT
AAACCAGCTATCTCTTATCAATTTGATAAAGTATTTGGAGAAGCTATATC
AACTGAGCAGATTTATGAAACACTTGGTAGTCCAATCGTGGAATATGTAG
TGGCTGGGTTTCATGGGACACTATTGGCTTATGGGCAAACAGCTTCAGGG
AAGACCCATACCATCATGGGGGATCCTGGTGACGAAGGAATCATACCAAG
AGCCTTGAAAGATCTCTTTCATAATATTCACAAGtgtgAAAATCGTGAAT
TTCTCATTAGAGCATCCTACTTGGAAATCTATAATGAGGTAA
Run BLAST on NCBI

protein sequence of TCONS_00011439-protein

>TCONS_00011439-protein ID=TCONS_00011439-protein|Name=TCONS_00011439-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
AKIATESGGRRNFSKKLSCIKASTFSFPSSGLPSKKMADVRKDEKTNIQV
GIRVRPCIKRELESHKKIVMKTNENRIFSTANDKPAISYQFDKVFGEAIS
TEQIYETLGSPIVEYVVAGFHGTLLAYGQTASGKTHTIMGDPGDEGIIPR
ALKDLFHNIHKCENREFLIRASYLEIYNEV
Run BLAST on NCBI

transcript from alignment at sc0000128:235982..255357+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011439 ID=TCONS_00011439|Name=TCONS_00011439|organism=Clytia hemisphaerica|type=transcript|length=19376bp|location=Sequence derived from alignment at sc0000128:235982..255357+ (Clytia hemisphaerica)
CGCCAAAATTGCAACCGAAAGTGGCGGCagacgaaatttttcaaaaaagc
tatCGTGTATCAAGGCGAGCACATTCTCGTTCCCTTCTTCTGGTCTGGTA
AGAGTTTCTCTTGCtttcattttactttttgttttatttcaagaTATTTT
GTATGGAACGGCTCATGCTCACAGCAGCTGCAGTCTATTTAATCTTGTGA
AAGTGTGCTTTGTAAACCTTTCTTTGTGTAtaaaccagacccgatcaatc
gaacttgtcgaaccaatcgaacaatcgaactaattgaactctatcgaacg
attaaagttcgattaaaaaaattaatcgaactctaagattttttaaaaga
ttgtgagtgttcgattaagttcgatcaatgggtttcggNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNggaaattacttccgatagtGGAT
TACACAcctttcctgtatccttttagcgccagaggcggtttgttggggcg
tagtattccgccactcggccgcgcgcgaaatcgcaacagaggggctacgg
actttaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNtcgaactttttactgaccgaactaatcgaactgcta
ttgcttcaaaaattgtgagtgttcgattaggttcgattaatttttttaat
cgaactttaatcgttggatggagttcgattagttcgactgttcgattggt
tcgacaagttcgattgatcgggtctggtataaaaaaagtaatagacaggc
agctgatgacatcaaaaaaagtgaataagtGAATAATTCAAGGGACAAAT
TCGCTACCTTATTTttaaaggggcctaagtccaggtccccccccccaatt
ctaaaagggcctaagtccaggtCCCCTCCAATTCtaaaagggcctaagtc
catttttatgaaaattgagatttttggtttttctgaatcTCTGGCTCACT
GGCTTTCTTTTGATGTATCTGACATGAAGATTTGGAGgtaaaaaagtcta
aaaattttggtctttagttaaaaaaaaaacgacatttaattttaaaaggg
cctaagtccatcatgTTAGGGCCTAAGTCCAAAGTAATGAAATTGTTGAA
tcttaaaaaggcctaagtccatcaatTCTTATGAATGTTGGGGCCTAAGT
CCAAAGCatttaaaattactaaattttagAAAGGCCTAAGTCCAGAAAGA
GGGCCTAAGTCCAAACATTGATAGATTCTAGCTAATGtgaaagggcctaa
gtccattgtTACTGTAGGATAGTGTTGCTATAAGGAAAATGGGCTGTACA
GGATGCAAGGGGATGCATTTTGTATAACATGGTTTCCTTTCTTTTCAGCG
TTTTCCTAGATTTTACTAACATTCTAttgctaatttttttccaaacactG
ATGTCATTGCATTGCACAAACCTGATTCGAATGTACTGTTTACAAAATAA
TTATTATGGTGGAATGTTTTGAACTGGAATTTATGATGGTGGAAATGTTT
TGAGAATTTATGCAAATTTAAGNGTgtttgtactagtaataacacgGTTA
TCACTACGTTCGGGCTATTtcgaaatgttttcaatgaacctcggggttat
taatcccaaatcacccgagaataccatgttattccgcgttaattatatgg
tcaaaaaaagaattgaagaacaatcAATCGTTTTTTTTTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTGATTGACACTCTTATCTAGATTTGCTTAA
AAATTTTGtgcgatattttgttaaccaatcaaaatgctctgaagatatcg
tacgatacttttcaaccaatagaaaatcttgtttacatcagggcgattac
aaaaaagcggggttattacggatttatcgccctGCTCGTCccttacaaat
ctaagctaaatataatcaaccatataattaacaaaataattattATGGTG
GAATGTTTTGAACTGGAATTTATGATGGTGGAAATGTTTTGAGAATTTAT
GCAAATTTAAGGTGGAACGAAATGTTTTGAACTGGAGTATATATATGTGG
AATGTTTTAAACTGGACTTTATGGTGTATATTTTTTCTGAACCCATTTTA
GGAGGGAGTCTTAAgcaggataaagacagaggcacccagagaggactaat
tatcctttcattgtaacatcgtctctctaagaggaaaaagaattcggcca
ctcttttgttgtttgtaattgtaggtctgacaggagaacattttattttt
tcatactatTATAGGGTATATATATTATAATCTTGGATTTGGTTAGGGGT
TTTGTCATATAaaggggtgggggggggggttctttAGGTCTTGAAGAATA
AGGGCGAAGGGAAGGGCAACCGGCAACCCTAGTAACCCCCGGGGAAAGGG
GAGGGTGACCAACAAAAGCGTGCAAAGGGGTAAAGGATAAAGGTAGAAAA
CTATGCTACTTATAACATTATTCAATACTAGAATTTCAGCTAGCTGAAGA
TATTCTGATAATTTCATCAACAAAGACAAATAGAAGTTTAAAATCCACTT
ATTAATGCCCGTGTTTTCTGACAAATTGTTTCTGAGGCCAAATCTCCTGC
ATTTAGAAATAATTTCGGAAAAacaagattttctgattttgaaaaaatgg
gaAAAGAAATTCCctgatttttccaaatttttaaaaaattttccaataaa
atcggatttcgcaaaaaaaattctgcctttttttcgattttccaactttg
aaaaaaaaggattATCAGGGAAAATTTGACTTGGAGCTCTCCCACATTTT
GGTGAGGCGACTTTGCtgcttttggaaaaaatcaattgaatcagttcttt
cctttaaaagtattaatttcaaagaaaatacaatttcACAAGCAAAATTA
CACAACTTcttgtaaattttcttttttctcttttcaatttaTAGAAAATG
TAATGAACTAAGGCCtttcaattttatattttcaagctttagaaaaatgt
aatggacttaggcctttcaGATTCGCTGAGATTTCTGTGGATATGATGTA
AAGAAAAAGGCTTTTCTAGTCATTTAGGACTTAGGCCTTTCTAAATGATA
GTATCTTATAAGGATTTGGACTTAGGCCCATTTATTGGAAAATATAGATC
GGCACTATGTCCATATGTCATAAAACTTGTTAATTTTAAAGAGACATAAG
TCCTCACTAGATCTTTTCCGGGGTGAAACAGGAATTATCCTATCTCCGAC
ACAATGGCTTTTAATTGGGAAGATAATAATTAGCCATAGGTCTCAGAAAA
TCCTTACTTTGTTACTTTTATGTGGAAGATTGTGTCAGAATCAGGAGAAT
ACTTAAATTGCAATTTactcaaaatcacaaaaacggACTTAGGTCCCTTT
AAAATTAAGGCTCTaaggacttaggcccctttaaAATTAAGGCTCTTAGG
ACTTGGGCCCCTTTAAAAATAAGGTAGCGATATATTGAGTActtatttta
aaatctttatagtttagagagtcagaaaaatttactcggcgtgtttaaaa
atctttaccggacgtgtccgagaataatttattaatttatgacgtcacaa
gcaaaagtgaaaaattgatgttgcaaaatttcaaagtttcatATACCATT
CGAAGCGTTTttttatgtagatttcaaatcacatcaatcttaataagtaa
aaatttgaatatgaaaagttATTAAGGTCCGTAGCTcttctatgacgtca
tttttgaaaaaacgcctcattttataaggaattacgatctcaattttctc
gagttaggctgagaaatcgaatatacccgtttaattgtcttctatatagt
tttttacgagctttcgaatggtgtaaattgtttttcgatttgatgacgtt
gaaatttgacatttttaggggGTGAGAGGGTCATGATTGACCAAAATCAC
ATGTAAAATGTAAGTCATatcttttgaaatctaaattttaacctattgag
actgatgtgatttAGAATCTAGATCGAAAAATGCGTCGAATGGTATATAT
ATCATAATTATatgctgaaatcaaattttcacttttggtggtgacgtcat
catttgacaaattacTACCGGGCATGTCcgttaaataaattttcggacGC
CGAGTAAAATTTTTANATTACTACCGGACATGTCcgttaaataaattttc
ggacgccgagtaaaatttttaggatcagtagatatatgggaacaagaaaa
atcaactcgACGTTTGTCCCAAAGTCGTCCAAATTTTAGATGTCGCTAGC
TGCCTGTCTATAAGTGGAatagcagttagtcacactaacgtcccgccaaa
atgagtatcaaagattaatgctgcgaaagcgctatatcttttacttgact
ctcaagcaaaaaaatgcgccgcgaaacttctaaagggattcatgaaaaaa
taacccggtgctttttaatgaaattaacattttcaaaaactttgagaaat
tgcctaaaatttgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNGAATGTTCCATTTTCAACTTGAAGTACTCTTTCGTTGTATTgt
cttttcttctctttctcgtTTGTTTCGTAGCACTTTGCAAGCTCTTGGCT
TCAGTATCTCTGGGCTTGTAGGTCAAAAACCCTTATGTCAAAAAATGCCC
GTTGACCCCTTGTCCAAAAGCTAACAGTGCTTACGTCAAGTCTTGCTTCT
TTTGATTGGTTTCCTCTCGTTTCTTCGCCTTCCTGGATTTCTGATAGCAT
TAGTTCGACTTTAACATCTTTGCATACTTCTGCTAACATATCAGCAGTGA
TATCACGCAGCTCGTTATGCCTCAGAGTGACAAAGCCTCCTTTTTTACAT
GACAGAGCATGCGCGGCGTCGAAGGTTGCACCACATGCACATTTTGATGG
CATCTTGTCGAGTTTCCAACCGTAGCGCAATCGTATAGCATCGGTAAACT
CGTTTCTAGAGAGGTCCAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATGTTCTTTCAATGGCA
AGGTCGTCAGCCAGTTGGATACGCCTTTTTGACCGTTCGCAAGGGTACTC
TTCTTTTTTTCGGGTGCCATTGATTGAATGAGATTGTcgagtttttcttt
ttgacgaTCTGAcctttcttttgtgatttgatgTTTGGTCGctggatttt
taattttctctttaCCAAGAATTTGATTTTGGTTGTCATTCGTCATTCGT
TGGGAATTATTGAACTCTTCTGATGCTGTTTCCACAAACATCTTCAATCN
NGAGAAGCTGGCGTTCATCGTCACTGACAAGTCGACCACCAGTGAGAGCA
GGAATCAAATGGTGTCGTATCACATCATCACCCGGTTGCAGATACttctt
tatttttactttagcgtataaacaaggccttaaaaatcgaagcgctgtct
cgggaattgaatgacaaaatttggttggttgatatttggctgctgcacgt
ttTATTTTGTTTCAAACTTTCAAGTTTTAATTAATGTCTTGcgaactctc
atccttgttgtgcaaatacatcctgtagatgactgatgttgtttttctga
aagctagatttcctagtgtgactaactgaataGCCCTGACAATCTTTCTC
ATGGTCATGGGGGTCAAATCTTAGATTTTCCAGAGGGATATTgttcattt
ttcagattttccaagggggtattgaagtttttcagggttttcaGAGGGGT
CTCTCATCATAAAATGACATCAAAAGTTGTTTTCCAgcctctttttttca
aaaaattcaactgGGAATTTNTAATGACATCAAAGGTTGTTTTCCAGccc
cttttttcaaaaaattcaacttgGAATTTTGGGAATATGAATTTTGCCAT
TGGAAGCCATGGTAATTTAGAGACTGAATGTATAGCTATTTCCAATTGAA
AGTTCTATTTAAATCGAGTTGAGGTGCAGGAATTATGAATTTAATGTGAC
AGCCATATCGATACCGTGAAGTCGTGTAACTTGTGGTGCATCAGTGGAGC
TTGCATAgcagccatcaaatgactgaccaatcaaagtcaaaatttcaaaa
caaattaactatgcagctccgctcgcagctctactctaccatctttgttt
tgatttaactttgtattttgatgacagtatatagacttaaacttgtatat
caagattacgggatttcgagtacgggccgattttactttcattttcagtg
gtttcacttttgatttcaagccaGCATCTAAGCACGGATTTTTCACATTT
ATCCTCAGGATCCTGAGGATATCCTCacctttttttgtatttactcaaaa
tatgaaccttaggatccttagggacctcaggcttttgcgaggatatcctg
aggatcctcacttttttctcttttttctcaaaatatgaaccttaggatcc
ttagggtcctcagtCATTTGCAaggatatcctgaggatcctcactttttt
ttctttttttctcaaattaagaaccttaggatccttagggtcctcaggct
tttgcgaggatatcctgaggatcctcacttttttctcttttttctcaaaa
tatgaaccttaggatcctgagggtcctcaggcttttgtgaggatatcctg
aggatcctcaatttttttctttttttctcaaaatatgaccCTTAGaatcc
ttagggtcctcaggcttttgcgaggatatcctgaggatcctcactttttt
ctcttttttctcaaaatatgaaccttaggatcctgagggtcctcaggctt
ttgtgaggatatcctgaggatcctcaatttttttctttttttctcaaaat
atgaccCTTAGaatccttagggtcctcaggcttttgcgaggatatcctga
ggatcctcacttttttctcttttttctcaaaatatgaaccttaggatcct
gagggtcctcaggcttttgtgaggatatcctgaggatcctcaattttttt
ctttttttctcaaaatatgaccCTTAGaatccttagggtcctcaggcttt
tgcgaggatatcctgaggatcctcacttttttctcttttttctcaaaata
tgaaccttaggatcctgagggtcctcaggcttttgtgaggatatcctgag
gatcctcaatttttttctttttttctcaaaatatgaccCTTAGaatcctt
agggtcctcaggcttttgcgaggatatcctgaggatcctcacttttttct
cttttttctcaaaatatgaaccttaggatcctgagggtcctcaggctttt
gtgaggatatcctgaggatcctcaatttttttctttttttctcaaaatat
gaccCTTAGaatccttagggtcctcaggcttttgcgaggatatcctgagg
atcctcacttttttctcttttttctcaaaatatgaaccttaggatcctga
gggtcctcaggcttttgtgaggatatcctgaggatcctcaatttttttct
ttttttctcaaaatatgaccCTTAGaatccttagggtcctcaggcttttg
cgaggatatcctgaggatcctcacttttttctcttttttctcaaaatatg
aaccttaggatcctgagggtcctcaggcttttgtgaggatatcctgagga
tcctcaatttttttctttttttctcaaaatatgaccCTTAGaatccttag
ggtcctcaggcttttgcgaggatatcctgaggatcctcacttttttctct
tttttctcaaaatatgaaccttaggatcctgagggtcctcaggcttttgt
gaggatatcctgaggatcctcaatttttttctttttttctcaaaatatga
ccCTTAGaatccttagggtcctcaggcttttgcgaggatatcctgaggat
cctcacttttttctcttttttctcaaaatatgaaccttaggatcctgagg
gtcctcaggcttttgtgaggatatcctgaggatcctcaatttttttcttt
ttttctcaaaatatgaccCTTAGaatccttagggtcctcaggcttttgcg
aggatatcctgaggatcctcacttttttctcttttttctcaaaatatgaa
ccttaggatcctgagggtcctcaggcttttgtgaggatatcctgaggatc
ctcaatttttttctttttttctcaaaatatgaccCTTAGaatccttaggg
tcctcaggcttttgcgaggatatcctgaggatcctcacttttttctcttt
tttctcaaaatatgaaccttaggatcctgagggtcctcaggcttttgtga
ggatatcctgaggatcctcaatttttttctttttttctcaaaatatgacc
CTTAGaatccttagggtcctcaggcttttgcgaggatatcctgaggatcc
tcacttttttctcttttttctcaaaatatgaaccttaggatcctgagggt
cctcaggcttttgtgaggatatcctgaggatcctcaatttttttcttttt
ttctcaaaatatgaccCTTAGaatccttagggtcctcaggcttttgcgag
gatatcctgaggatcctcacttttttctcttttttctcaaaatatgaacc
ttaggatcctgagggtcctcaggcttttgtgaggatatcctgaggatcct
caatttttttctttttttctcaaaatatgaccCTTAGaatccttagggtc
ctcaggcttttgcgaggatatcctgaggatcctcacttttttctcttttt
tctcaaaatatgaaccttaggatcctgagggtcctcaggcttttgtgagg
atatcctgaggatcctcaatttttttctttttttctcaaaatatgaccCT
TAGaatccttagggtcctcaggcttttgcgaggatatcctgaggatcctc
acttttttctcttttttctcaaaatatgaaccttaggatcctgagggtcc
tcaggcttttgtgaggatatcctgaggatcctcaatttttttcttttttt
ctcaaaatatgaccCTTAGaatccttagggtcctcaggcttttgcgagga
tatcctgaggatcctcacttttttctcttttttctcaaaatatgaacctt
aggatccttagggtcctcaggcttttgcgaggatatcctgaggatcctca
cttttttctttttttctcaaaatatgaaccttaggatccttagggtcctc
aggcttttgtgaggatatcctgaggatcctcaatttttttctttttttct
caaaatatgaaccttaggatccttagggtcctcaggcttttgcgaggata
tcctgaggatcctcactttttttcatttttttctcaaaatatgaacctta
ggatccttaggatcctcaggcttttgcgaggatatcctgaggatcctcgt
ttttatttcttttgtctcaaaatatgaaccttaggatccttaagGCCgat
ctccacttgcgcgcgctttgatcgcactttttcgagtaaagcttccacgc
tattggtcaaaagaaaaatgaagcaactccattggcgcgaNNNNNNNNNN
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gcttccacgctattggtcaaaagaaaaatgaagcaactccattggcgcga
tctgacgtaacggttgaaaaaagttgaaatgtgttcaacttcttttttga
gcgcgcgctacatttttatgacgtaatcttatTTCCAAGCAAAAATAATT
GAAGCCAAAAtatgcgatcgcagcgcgcgcaagtggataCCGGTCtttag
ggtcctcaggcttttgcAAGGATAATCTGAGGAtcctcactttttttctt
tttttctctcaaaatatcGTAAATCTTCCTAAGATGGAATAATGCGTACA
TTAGGAATTTTCATGTTAAAATCAAAAGGTTAAAATGTTGTAAAAGATTA
TTAGTAGGTAAACGTTACCAAAAGAAAGACCCTTTTCCTGATACANtttt
tttctctcaaaatatcGTAAATCTTCCTAAGATGGAATAATGCGTACATT
AAGAATTTTCAtgttaaaatcaaaagtttaaaatgttGTAAAAGATTATT
AGTAGGTAAAGGTTACCAAAAGAAAGACCCTTTTCCTGATACAAATGAGA
GACTCAAATGTCAAAATTGTATTATAGGGTTATTGTATCATGATGAACAT
CATTTAAAAAGGCTAATTAAAAAGGATAGAATTAGCCTTCATGCAATAAA
GTTAAATAAAGATAATTCAAATTACAAACGAAATTCATTAAATTGTAATC
CATAAAAATACATTATTATTCAACAAAGTCCTAATTCAAAAAATACCCAT
AAACTTCGCTAAAAAAGACGTGGAGTACTTGAAGTCAAGAAagttaataa
taataaactgTCTGTCAAAACCGAGGAAAAACTATGGCGAACCAAACCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNttttttctctcaaaatatcGTAAATCTTCC
TAAGATGGAATAATGCGTACATTGGGAATTTTCATGTTAAAATCAAAAGG
TTAAAATGTTGTAAAAGATTATTAGTAGGTAAACGTTACCAAAAGAAAGA
CCCTTTTCCTGATACAAAATGAGAGACTCAAATGTCAAAATTGTATGATA
GGGTTATTGTATCATGAtgaacattatttaaaaaggctAATTAAAAAAGA
TATAATTAGCCTTCATGCAATAAAACTTCAGTTCGTTAAATAAAGATAAT
TCAAATTACAAACGAAATTCATTAAATTGTAATCCATAAAAATACATTAT
TATTCAACAAAGTCCTAATTCAAAAAATACCCATAAACTTCGCTAAAAAA
GACGTGGAGTACTTGAAGTCAAGAAagttaataataataaactgCCTGTC
AAAACCGAGGAAAAACTATGGCGAACCAAACCTTAAAAAAGGATCAAGat
agtttcaaaatttcaaaattcaaaaattcaaaaatcaaaaataatgttAT
CTATTTAAAACAAGTTAAGTTTTTGCCATTTAGACTTTACATTTTCTTTA
TCAGGACATTCTATATCATCAGGGTGGAATCGCTTGAATACTTTTTGTTT
ATCACTGATAATAGTACCAAGCCCAACTTTACAAAGTCCATTCACGAATC
GATCAGCTACATCTGCACCTTTTTCATTGTTTATTATAGGATAAATATTG
TCTCTCGTAATTATTGATAAGGGAGTACGTTCCTTTTTGCAAATTCGTTT
GACACAGTCTTGTTGTGTTGGACAAGGAAGTCCATATTCATGTTATCACC
ATTTGGTACTAGTTGTTTTAGAGAAGAACCAGACGGCATTTCGACAGGAA
TTTCGGGAAATTATGGAATTTGTCCAAAAACATCTACAAGCCACAGAAAG
ACGGAACTCAAACTCTCGGCCGTGTACATTTCAAAGTGAGACAAGCGCAT
TCCACACGATCGGAAAATGTAAAACATACCTGCAGTACGGGTGTAGAAAC
GATCCACATTCTCATCTACTTTACAACCCATGCCAGAAGTGACCGTAGGA
GGAATTTTCTTACTAAAGCTTCTCGTAATTGGTCTCAAGTCCAATATTTC
TTTTGTAGAATTTGACTTTCCATCAGAATGAAACTTGCAAAATTTCGACG
CATTCACATGCTGATTTCCCCGAACAGGATTTCTAATGCAGACATCAAAA
CTGTGTTAACATTTCCTATTGATCCAATGATTCTACTCTTTTCAACAGAA
CAAATGGATTGAAACAGTTTTTCGTTGCCGTCTATAACAACAAAACGATT
TCTACATCCTTGCTCGTTACATTTATGATCTAGCCATTTGTTGTCTATAT
TTTCTCGGACTTTTTGGTAAACTTGATCACATATTAATTCAATATCAATA
TCAGAATTTTCATTCCGCGGCCAAGGGTTAAACGTTGTGACATGATGTAA
TATNGCAACCAAACCTTTGATGATTTCAAGTCTCTTCGGAGTCCTAGACG
GGACGCTTTTGAAGATGTCACAAATTATGATAAAAAGATCTAGATTGATc
ctcatttttataatatctttttataatgaaaaaatgattcTACATTAAGA
ATATCGTTAGAAAGTTTTGTTACATTAGCACGACTTCCAAATATTGAGtt
gggaaataattgacgtcaaaaacttttttgaggaTCCTGAGGATATCCTT
GGGAAAGCCTGAGGatcctaaggatcctaaggatCACTTtctttaatgaa
aaataattgacgtaaaataaatttttgaggatcctgaggatatcctcgca
atatcctgaggaccctaaggatcctaaggttcatattttgagaagaaGAG
ATAAAAAAGAAGGATCCTGAGTTAGCTAAGGATCCTTGGgaaattaaaat
attgatgTTTTATCAAGCCGTATCCAAGGCAAAAGAGAGGATCCTGAGGA
TATCTTCTaaaagcctgaggaccctaaggatcctaaggatATAAGTGAAA
AATCCATGCCTGAGTGCcgggtgcttgcccatagttacagggaattgtgc
aaaaaaacaaacataggaagttttccaaatcccctattccaataaaaaat
gaaacttttccatgtttcacttttttgcaccaattcttcaaaatgaaaat
atataacCATAAATATTTATTGACATAATTTAACCTTTCAGCCCGGCAGA
CAAGCATACACGTCGATCATACGTTCCGGCAGACGTGTTTGTATATTCGT
TTTTTTTACATAGTGATCTTCTAAGCTATTTTTCTCCCATTGGCTTCTTT
CCTGAAAATGATGGCAGGAGCCACATAACAGTCACATGGAATTGTTATGA
TGACATGTAGCATTACTTTGGGCAAAAGAGACCAGATTCGATATCAATGA
GTCTGCCTCAAAAGGCTTAcggtttttggaaactttgcaaCTGTCGTCGA
CGATGTCCTCTAGTTTCACGATAACCGATACCCTTCAAAAGCTTCAGGAG
CGAAGAATACTGACTGAAAGTGTTGCTAAGATAGtacttttaaatcattt
ttgctGCTGTAGTTGCTTCTGTAAACACATTTCATTATCATCCAAATACT
TCAATATTGTATATTATATTGGAttttttagccgaaaatcgcGATCTTTG
GCAAAAGTGACCGATATTTGGGCGGCTGTTGTGACACATATCGATTTTTC
TGGATgctgatttttggtatattacCTCAAAATGATGTTGATAGATTGAT
AAACAGCCAAAGAgagattttttaattaacttccctccacttttttttgc
tctagaagtgaaaattgcaaaaaagtgacattgccgcaaaacgtgaaaaa
aaactttggtttacgtgatgctaccatttttttggaatattttatttgga
ttggtaCTTAGTCTAAAAGTTGTAGAATTTAATTAGCTTATCAGGGATac
cttactttttttctaaagattcctagttcttgagttatgataAAATAACT
GAATGTGTgtagtctgtaaactttatagaaaaagcgcgggaaaatgaaac
gaagagaaaaaaagggagaaaatattttcatgtcttcAAAACGTTATAag
acaaaaacttgaaatttttttaacaccaaattttcagattcggtCATATT
TGGCATgctgattattttaaaggtattttcgagcaattttgaggtatata
cagtaagtattaagtattaggtagtaagtattaggtagtattaggcgttt
tagacctgcccgtATTTTTATAGTGCTCTATAGGATGAtaagtatttttt
tgaattctatgttagATCTTTCTACCCAGCCACGTTGTTATGTACACGCA
TCTTGTTGCTAAGAccttgcttgaaatcgaaaccgaaaccaaaatatttt
aacGCACTGATGCGCGCGTAATATCGTTAAAGTTAAAAGAAGCCCTCACT
GAAGGTAGAAGAATAATTGCTTCAAAACCGATATGACACTCCTCTTACAC
TTATCACAATCTCCGCCCACTCTTTCTTTAGCCTTCCAAAAAAATGGCAG
ATGTAAGGAAAGATGAAAAAACTAACATTCAAGTTGGTATACGTGTTCGT
CCATGTATCAAAAGGTGAGtttcctaaaatatttttctttttcaaaactt
acaactgacaaagaaaagataattttaaattaaaaaaaatcctaagaatT
CTTCCTTTAGTTTTGGTGCCTGTTACAATTCAGGTCTTTTACTAGTTTTT
CTGTATACCCTGgtataccttaagagaagaaattttggcaagaagaaatt
ttggcgaaataGCCCATTGgccaattttggtgcaatttggcggaatttat
tttggtgatttaataaaatctccaaatttggcgagaattactTTTGGCGA
ACAacccatttttgttcaatattttagctgaaaaaagagGAAATAAAGGC
TTTTCAGGAGAAATAGATAGAGACTAAATTGAAATTTGgcaagaatttat
tttggcgaatgacctataaatttctttccgccaaaatttcttccaaggAC
TAAGGTACTATATACTTTTTACAAAAGTAGTATATCGTTAAATTTCTTTT
AGGGAACTTGAAAGCCACAAAAAGATTGTGATGAAAACCAATGAAAATAG
AATTTTCAGTACAGCAAATGATAAACCAGCTATCTCTTATCAATTTGGTA
AGATATCTTATTATCTCTGAATGTCTTTCTAGAATCAGTCATTAAAACAT
TGATACATAAACTAAATTCCTATTCTTAAATGCCTTGATTGTGTTTACGT
TCTCCATTCAGATAAAGTATTTGGAGAAGCTATATCAACTGAGCAGATTT
ATGAAACACTTGGTAGTCCAATCGTGGAATATGTAGTGGCTGGGTTTCAT
GGTATGATATGTTCATAGAACTTGTTCTGCACTGTTTCAAACATATCAAT
TGCACAGATTCTTCTTTTCCAAAGAaagtaaatttgaaaacagcaaACTC
TGTGACCAGGATTAGCTTTTGTTTATTTCGCATCTAGTGTTTTGtgtttg
ataattttcattgcaaaaagcttcaaaaaaggCAGAAAAACATCTTTCCA
TACAAAGAAATATTGAATACAGAATAATAGAACAAGTGATATGTCATGGA
CACCTGTAAATTGTAaagtaagaatcaaattaaataGTGCACATACAACT
TTATATTGCTTCATTAATATTTGTAGGGACACTATTGGCTTATGGGCAAA
CAGCTTCAGGGAAGACCCATACCATCATGGGGGATCCTGGTGACGAAGGA
ATCATACCAAGAGCCTTGAAAGATCTCTTTCATAATATTCACAAGGTATC
AATAATTGTTAGGATTTCATTGATCATGAATTGTAATTATTTGTCTCCTT
TTTAAGAAATAAGCCTCTGTCAGTCATAATCTTGAAACTCTTTTTACCTC
TAGAGGAATTAAAATTGCATTACTTTTTTTACCTATCAGCGAAACTTAAA
TGTCTTTTCAGGTGCGGAGAAACGGGACACAAACTCTGTATTTTCTAACC
CATCAAAGACGAAAACCCTGGCTACCCGCCATCTCATTAACATTcctaac
aacaacaaaaaatatccTAATATTTCAAATGTAGCAGTGATTTAAAAGtc
atcttatttttattttagtgtgAAAATCGTGAATTTCTCATTAGAGCATC
CTACTTGGAAATCTATAATGAGGTAA

Coding sequence (CDS) from alignment at sc0000128:235982..255357+

>TCONS_00011439 ID=TCONS_00011439|Name=TCONS_00011439|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at sc0000128:235982..255357+ (Clytia hemisphaerica)
GCCAAAATTGCAACCGAAAGTGGCGGCagacgaaatttttcaaaaaagct
atCGTGTATCAAGGCGAGCACATTCTCGTTCCCTTCTTCTGGTCTGCCTT
CCAAAAAAATGGCAGATGTAAGGAAAGATGAAAAAACTAACATTCAAGTT
GGTATACGTGTTCGTCCATGTATCAAAAGGGAACTTGAAAGCCACAAAAA
GATTGTGATGAAAACCAATGAAAATAGAATTTTCAGTACAGCAAATGATA
AACCAGCTATCTCTTATCAATTTGATAAAGTATTTGGAGAAGCTATATCA
ACTGAGCAGATTTATGAAACACTTGGTAGTCCAATCGTGGAATATGTAGT
GGCTGGGTTTCATGGGACACTATTGGCTTATGGGCAAACAGCTTCAGGGA
AGACCCATACCATCATGGGGGATCCTGGTGACGAAGGAATCATACCAAGA
GCCTTGAAAGATCTCTTTCATAATATTCACAAGtgtgAAAATCGTGAATT
TCTCATTAGAGCATCCTACTTGGAAATCTATAATGAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006418XLOC_006418Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011439-proteinTCONS_00011439-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011439-exon-sc0000128-1491911889:235982..236078TCONS_00011439-exon-sc0000128-1491911889:235982..236078Clytia hemisphaericaexon
TCONS_00011439-exon-sc0000128-1510915933:235982..236078TCONS_00011439-exon-sc0000128-1510915933:235982..236078Clytia hemisphaericaexon
TCONS_00011439-exon-sc0000128-1575043694:235982..236078TCONS_00011439-exon-sc0000128-1575043694:235982..236078Clytia hemisphaericaexon
TCONS_00011439-exon-sc0000128-1491911889:253663..253745TCONS_00011439-exon-sc0000128-1491911889:253663..253745Clytia hemisphaericaexon
TCONS_00011439-exon-sc0000128-1510915933:253663..253745TCONS_00011439-exon-sc0000128-1510915933:253663..253745Clytia hemisphaericaexon
TCONS_00011439-exon-sc0000128-1575043694:253663..253745TCONS_00011439-exon-sc0000128-1575043694:253663..253745Clytia hemisphaericaexon
TCONS_00011439-exon-sc0000128-1491911889:254234..254328TCONS_00011439-exon-sc0000128-1491911889:254234..254328Clytia hemisphaericaexon
TCONS_00011439-exon-sc0000128-1510915933:254234..254328TCONS_00011439-exon-sc0000128-1510915933:254234..254328Clytia hemisphaericaexon
TCONS_00011439-exon-sc0000128-1575043694:254234..254328TCONS_00011439-exon-sc0000128-1575043694:254234..254328Clytia hemisphaericaexon
TCONS_00011439-exon-sc0000128-1491911889:254443..254532TCONS_00011439-exon-sc0000128-1491911889:254443..254532Clytia hemisphaericaexon
TCONS_00011439-exon-sc0000128-1510915933:254443..254532TCONS_00011439-exon-sc0000128-1510915933:254443..254532Clytia hemisphaericaexon
TCONS_00011439-exon-sc0000128-1575043694:254443..254532TCONS_00011439-exon-sc0000128-1575043694:254443..254532Clytia hemisphaericaexon
TCONS_00011439-exon-sc0000128-1491911889:254858..254976TCONS_00011439-exon-sc0000128-1491911889:254858..254976Clytia hemisphaericaexon
TCONS_00011439-exon-sc0000128-1510915933:254858..254976TCONS_00011439-exon-sc0000128-1510915933:254858..254976Clytia hemisphaericaexon
TCONS_00011439-exon-sc0000128-1575043694:254858..254976TCONS_00011439-exon-sc0000128-1575043694:254858..254976Clytia hemisphaericaexon
TCONS_00011439-exon-sc0000128-1491911889:255300..255357TCONS_00011439-exon-sc0000128-1491911889:255300..255357Clytia hemisphaericaexon
TCONS_00011439-exon-sc0000128-1510915933:255300..255357TCONS_00011439-exon-sc0000128-1510915933:255300..255357Clytia hemisphaericaexon
TCONS_00011439-exon-sc0000128-1575043694:255300..255357TCONS_00011439-exon-sc0000128-1575043694:255300..255357Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000128supercontigsc0000128:235982..255357 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.32699	5.81801	5.18708	3.65854	49.1368	38.9421	23.4225	23.3384	6.82321	9.00767	10.9018	5.25066	4.18052	3.9	4.29527	6.16762	7.91792	8.60747	2.37834	2.25173	3.29628	4.97416	6.10782	7.44088	20.0177	18.0695	4.09044	1.09136	4.73003	4.45772
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001752Kinesin_motor_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003777microtubule motor activity
GO:0008017microtubule binding
Vocabulary: Biological Process
TermDefinition
GO:0007018microtubule-based movement
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007018 microtubule-based movement
molecular_function GO:0005524 ATP binding
molecular_function GO:0008017 microtubule binding
molecular_function GO:0003777 microtubule motor activity
Blast
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BLAST of TCONS_00011439 vs. Swiss-Prot (Human)
Match: CENPE (Centromere-associated protein E OS=Homo sapiens GN=CENPE PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.505e-31
Identity = 60/135 (44.44%), Postives = 87/135 (64.44%), Query Frame = 2 
Query:  143 IQVGIRVRPCIKRE--LESHKKIVMKTNENRIFSTANDKPAISYQFDKVFGEAISTEQIYETLGSPIVEYVVAGFHGTLLAYGQTASGKTHTIMGDPGDEGIIPRALKDLFHNIHKCENREFLIRASYLEIYNEV 541
            + V +RVRP   RE  L    ++  KT+ N I+     K   S+ FD+VF    +T+ +YE + +PI++  + G++GT+ AYGQTASGKT+T+MG     G+IPRA+ D+F  I K  +REFL+R SY+EIYNE 
Sbjct:    7 VAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSK---SFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNET 138
The following BLAST results are available for this feature:
BLAST of TCONS_00011439 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CENPE2.505e-3144.44Centromere-associated protein E OS=Homo sapiens GN... [more]
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