|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011461 ID=TCONS_00011461|Name=TCONS_00011461|organism=Clytia hemisphaerica|type=transcript|length=735bp
TAACTATAATGTCAAgctcaagatgtcaattaatgtgatcaaaaaagtaa
CAAAGGCAAAGGGAAATACCGAGAAGGCATCACAAACAAAATTGTGAAGG
TTGTGGTGGAGTATACAACACTGCCAGCAAAACAACATGGCTGACGAAGA
AAGTTCCTTCAACCCAAAGAATCCCACAAATTTCAATGTAGACGCTCAGC
TTTTGCTAGTACCAGGAATACTTATAGTTCTTGGCGTAGGTTACCTTGTT
TATCGATTGCTACAAAGTTATAAATTGAAAGAGcttgaaaaagaacaaaa
acgcaagaagaaagaagaaaagaaaaaacgcTAGGAGTAGgatgacaatt
gaataaaacaaatttttcgaaTTGAATGTTACAATTTGACTGGTGGGGAT
TTAGTTATTTTtctaattattattattattacaatGATCGTATAAATGTA
AATACCTTTTATTATTAATTATAACttcttttaatttaatataaaaagca
atttaAGTGTACTAACTTAAAATGGTCAGAGCTCTGTTATTTTCGTTGCT
AGAAAAAGTACGTAACGCCGTAGGTTTCTGCTTATCCTCCaacgaaaaaa
gtttcttgcaTTTATTTGGTTTTATTCAAAgttaatctttttatttttac
ttttgacgcagccatccgccaaattaaatttcctccAAAAAACTTTTCGG
TCatcccaaaaatttttttatattacaAAAAGTCA Run BLAST on NCBI transcript from alignment at sc0000128:559546..567958+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011461 ID=TCONS_00011461|Name=TCONS_00011461|organism=Clytia hemisphaerica|type=transcript|length=8413bp|location=Sequence derived from alignment at sc0000128:559546..567958+ (Clytia hemisphaerica)
TAACTATAATGTCAAgctcaagatgtcaattaatgtgatcaaaaaagtgt
aagttgtaaaaataattacctctattattctgaatccgttgctcgtgttt
aaaacgttaacaatttatgtcatgaaaaattatgttttgtataacaGAAA
CAATTGTTGTAATTTAGTTCAATTGGGTCAGTGTATCAAAAATCTCTctg
tttagttgacactttggtatctttgttgcgtcacagcaaaaggtttgttt
tcattttagtttgtatctttgaaagaccccattggATTTAGGTAGGgttg
tcggatttaggaccactcacggtactgaCTTTATTCCGGGCTGCCGGAta
caataaacgtcaagctgttaagtctgagaactgtcgaaatggcaatcgcg
tgccaggacaaagtttttgcaaacAAGGGAAGATACGAGGTGCcgtagta
tagtggtagtcgaccttggcttctgtgcaggcgaccagggttcgattccc
acttacggcagttcacttggcaagtgaacgttccttcgcccgggtcaacc
catgccatatgaggggaattgggtagtcagttcaaggtgctgacgggacg
ctcattagtaactTGTGgaattatttatttcttttttatttttacttttt
tctatcCTGAGCTAGTCCTTTTTGTCTCTTCTGATTTTACTCTTTGTGTC
TTGTGTCCCCATNcaaaaattgattgaaaacagggaatttccccacaatc
tgcataatttatgcaaaattatagcacttttttaccacaaaaacgcccat
aacttttgatctagaaatcagcaccctcaaattgaccaagaaagatatca
aaagtttattcaccgacattctgaaaaaaagtgaaacgttttgagGTACC
TGGCCATGGTCTATATTGCTTCAAAAAGTGtcagtgttcgattaggttcg
ataaatttttttaatcgaactttaatcgttcgatggagttcaattagttt
gactgttcgattggttcgacaagttttgattggtgaaggcttcttcgtaa
aagcgaaAGAGATGtacctatttttcggatccggcatgcgggaaccagta
tggatttcgtgtaactaacgccGAAGTTCTTCGGCGTAANtgatatgaaa
atatttattttaatagtttttaatttccaaattaaaaatatttttcctat
aATTCCTACAATTTTCTACTTAGCTTGGCATGGCATGTAATCGTCTCGTC
CCAGCTCACTCTTACACTTTGATATTTGAGTCTACACCTACTTTTGTGCT
TTCCATTTATCAGCGTCTTAGAACATCTTGCGCtagatgtttttaacttt
ttattttattttatcctttatgtttaaaatcacgaaaatgtacGTAATGT
ATTATGTGATAATTCAAAAGAACTAGAactagtaagcgtctatagttgcg
agaataggcctctaaagcctcctgcaactcaaccaaatagaaatagaaat
agaaaatagaaacgAGGagttaatatcatcgaactaatcgaactttttac
tgaccgaactaatcgaactgctattaGGCCGTGGCCAGTAGAttgttatt
gtttcaaaaataaaaaataaaataaaaaatgtctgTGAANttttggcgca
ttggcgtaagggtacttacaaagattgtttgattttcagttggcgtaaag
taataattccagctcggcgtgaatgactccatgTAATCCATCAATTTTTA
GCttccatttggctaaatttgctttcgctcgcttgcgctcgcgtcaattt
attaattatgttggcgcgtgcgcctcttttcccatCTTGCACCCTTATTg
aaaaattgaatgttggtacaaaagaaattttgcttggcgtgaggcttgct
gcacggaaaaatatcttcggcgcgagatttcgtggaatccatactggtgc
gggaatagtgtcagaacctacaggcgacctggtagggttgggtatgggtg
tggtttgggtgtggttacgtatcagattggctaggaatttggttattatc
agttagggttagggttggagctcgaaaaaagcactcttttgCGATTTTCT
CTcatctcttaatacagtctggtctgtagtttgtacaatataaatagccg
tcagaaacgcTCTTTCGGCATGAATCCTTGggcattgggtttcaaaacat
cggaactttgcatttagtgggttcgaatcccaccggtggcgatctgtcgg
taagtcattcagtaagttagaaaacatagtagataactcacacagaacca
gacagtcagaaaaactacgaacaagagactggaaagtacaaaataagtcc
agatctgtctttcgtctttacgaagaagccatgCATGACCGTTGTTTTGA
TTGATCAGCAGGTCCCAggtagatagatagatagatagatagataaatat
ATTTACCGGGGACGATCGTAAAAATATATACATGTTCGTAAGAGCATATA
AATGTACATTCGCTCTAGTTTTATGGTAATAAATGTATCTAGAATCAACA
GATGATCGCTATAACGTATATAAACAAAATCttatgaaaataaatatatg
ttttcttttttttaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGTGGT
CTGAAATAGTAGAAATAATATTGCCTGAATGAGTAATAGTTTCAAAACTG
TTTGTAAAAATGTTGTCAATCAAAGTCTTACTGTGGGGAGTAATTCTTGT
TGGTCTAGTGATAAGTGGCTTGAAGAAATGAGAGAGATTGCTGTgaatga
aattttctgtttcttcGTGAGATTCTAATTTTAGAAGATCAAGATTGAAG
TCACCCATAATGaaagcttgttttttttctcgagaAATTTTTTCGAGTAA
ATTTGAGTAAAGAATATTAAATTCAGAACCAGGTTGCAGGTAGGTGTCTG
GAACAGGACCCACCCAAGTGTAAGTGCAGTTTGTAAACATCAAATATAGA
AGGATAAAACAGTAAAAATAAATGTGTCCATTATGTCCAGACTATCCCAC
CTTAAAATCTTTGAAGAAAATAaccagaaaattgaaaaaaatgaagaaga
aaagtttTAGAGCCAAAAACGAAAGTTTGTTTTTCAGTTTTGTGCATCCG
CTGCTCTTTTCGCCCAGCTAAACCGATTCATGACACGGGGAAATATTTCG
GATTATACATACGCCCTACAAATGGGCGGATTGGGGCGTGCTAGGAAATT
TTACTTTGCTAAGTGCTGTGTGTACACGTGTTCAATGTCCATGCTGTTGA
TTGGTCCaggtttttttcttcagaaCAAAGGCAAAGGGAAATACCGAGAA
GGCATCACAAACAAAATTGTGAAGGTTGTGGTGGAGTATACAACACTGCC
AGCAAAACAACATGGCTGACGAAGAAAGTTCCTTCAACCCAAAGAATCCC
ACAAATTTCAATGTAGACGCTCAGCTTTTGCTAGTACCAGGAATACTTAT
AGTTCTTGGCGTAGGTAAGAAGTTTATTACATTATTAGTTGTTTGGGTGA
AAAGGCTGCCCCTTATTTTGGCTTGATGACTCATTCAGATTTAATATCTA
CTAGCTATCtcataaaagtttttaaaagggATCATATTTATGCCAAAAGC
TGCTAAAACGCTCCAGACCGAGACAgccaaaatttgaatttaaaaattta
tgaatttacattttttttaccaGTGTAAGGCATTCAGGTTTGTGGCATAA
ATTTGGGGACCTTTTTTGGCACTCTATTAtaacaggaccctgccgacgca
ccggacttaacgaacaccggacacgcgaaagtccggtgtaaaatgagaat
tttttttaccaccggacaatttctacaccggacttaaggaagtcggatgt
ccggtgtcggagaaggatattttttcccaccgaNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNatgcaacaccggacttattgc
gtccggtgtagcgaaaggatactttttgccaccggacaaatacaccggac
agtccggtgcgtcggcagggtcctattaTAACCTAACATGATAGGACCCT
CCTGGCGCTCTGGAAACTTCCAGAGTTTTCCggagcagctaaaaaaacac
tttttctctCCGGAAAGTTTCAGAGTGCTTCCGGTGTTTCCAGAGCAAGT
GACTTTTAACACAttctaaaaaaaacgtttaaaaatatttgtctCCAGTT
CTTTGGTCGAAAAcaagaaatattgaaatatcgaaaaaatttaaaaacgt
GAGGTTTCACTAccatgagatttttttttaatatgcaTGTGCGCAGTTAG
TTTTTACATTAATAGCACAGCTAGCGCTATCGTAATTATATCACTGATAT
CTTGCTATCCGGAACACCAGAAATGCACTAGAATGTTCCGGAGTTCCCAG
TGCAGACCAATCCCCGAAAATCGTGCTCCAGAATCTCCCGGTGTTCCGGA
GCATGAAAAAACGGCCCTTTTTGCTCCAGACGTTTCCTAAGCGTCCGGAG
GGTCCTGACATGATCATCACATACTAAAATTGTAGCTCTAAATTGCTTAG
GAGAGCTATGCCTATGAACTGTCCAAAATATAGTGAAGCAGTTCCACTCA
TTGcttctaatttcaacatccttctttaaagataggaataataggaagct
cagaatcactgatggactcctcaactgattgctcagcaaagaaaaatagt
ttcaatcAGTCATTTCGACCTTTCTATTATTCcgatctctaaagaagggt
gaccaaattagaagagggatgtcaacattggACCAACTTACGATAGCCTA
TAAAAACCTGCATCTTTATGATCAGCCGTCATAAAGATAGTCAGTAGCTA
TACTATAGCTAGGCAGTTGGGGTCATTTTGGTTgtatatattttcaatta
aaagtggtcTTTCATTGTTCACAACTTGTCCAAGTTANGTGGGATTTTAT
GAGATTTTTccctgaggcataagcatcctatagagaaggtctggagaaag
tttcagctatatattatttttttcctacaaacagcctgtacttTTGTAAC
ACGGCCACACTANAGAAAAGTTTTTGGCTAAAACTTCTTATACTAGCTAT
GATTTTTAATCGCATCAAAATTGATCTTTTAGCAGCATCAAATGACCAGC
ATTATAACGCGCAACTGCTTCACTTCTATTTTGGGCAtgtagtggggtcg
tttagcataatttacagggaaaaaataatatatagctgaaactttctcca
gaccttccctataggatgcttatgcctcaggaaaaaaatcCCCTAGaatc
atgttttgaaaatttcaaaNTCTCCTGAATTCTTCTTTAAAGTACGTCTA
AGATGATCATGCATAAGGCTCATAGTTTTTTCGTGCCCAATTAATAGCCT
ATTTTGGATATGCTAAGCTACTCGAGAGTGAAAAACTGATGAGTTTTGCT
TTCTTTCTTGCTTTCAGGTTACCTTGTTTATCGATTGCTACAAAGTTATA
AATTGAAAGAGcttgaaaaagaacaaaaacgcaagaagaaagaagaaaag
aaaaaacgcTAGGAGTAGgatgacaattgaataaaacaaatttttcgaaT
TGAATGTTACAATTTGACTGGTGGGGATTTAGTTATTTTtctaattatta
ttattattacaatGATCGTATAAATGTAAATACCTTTTATTATTAATTAT
AACttcttttaatttaatataaaaagcaatttaAGTGTACTAACTTAAAA
TGGTCAGAGCTCTGTTATTTTCGTTGCTAGAAAAAGTACGTAACGCCGTA
GGTTTCTGCTTATCCTCCaacgaaaaaagtttcttgcaTTTATTTGGTTT
TATTCAAAgttaatctttttatttttacttttgacgcagccatccgccaa
attaaatttcctccAAAAAACTTTTCGGTCatcccaaaaatttttttata
ttacaAAAAGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011461-exon-sc0000128-1491911889:559546..559593 | TCONS_00011461-exon-sc0000128-1491911889:559546..559593 | Clytia hemisphaerica | exon |
| TCONS_00011461-exon-sc0000128-1510915933:559546..559593 | TCONS_00011461-exon-sc0000128-1510915933:559546..559593 | Clytia hemisphaerica | exon |
| TCONS_00011461-exon-sc0000128-1575043694:559546..559593 | TCONS_00011461-exon-sc0000128-1575043694:559546..559593 | Clytia hemisphaerica | exon |
| TCONS_00011461-exon-sc0000128-1491911889:565119..565309 | TCONS_00011461-exon-sc0000128-1491911889:565119..565309 | Clytia hemisphaerica | exon |
| TCONS_00011461-exon-sc0000128-1510915933:565119..565309 | TCONS_00011461-exon-sc0000128-1510915933:565119..565309 | Clytia hemisphaerica | exon |
| TCONS_00011461-exon-sc0000128-1575043694:565119..565309 | TCONS_00011461-exon-sc0000128-1575043694:565119..565309 | Clytia hemisphaerica | exon |
| TCONS_00011461-exon-sc0000128-1491911889:567463..567958 | TCONS_00011461-exon-sc0000128-1491911889:567463..567958 | Clytia hemisphaerica | exon |
| TCONS_00011461-exon-sc0000128-1510915933:567463..567958 | TCONS_00011461-exon-sc0000128-1510915933:567463..567958 | Clytia hemisphaerica | exon |
| TCONS_00011461-exon-sc0000128-1575043694:567463..567958 | TCONS_00011461-exon-sc0000128-1575043694:567463..567958 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000128 | supercontig | sc0000128:559546..567958 + |
Blast
The following BLAST results are available for this feature:
|
