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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011462 ID=TCONS_00011462|Name=TCONS_00011462|organism=Clytia hemisphaerica|type=transcript|length=982bp
GGTGGTCTGAAATAGTAGAAATAATATTGCCTGAATGAGTAATAGTTTCA
AAACTGTTTGTAAAAATGTTGTCAATCAAAGTCTTACTGTGGGGAGTAAT
TCTTGTTGGTCTAGTGATAAGTGGCTTGAAGAAATGAGAGAGATTGCTGT
gaatgaaattttctgtttcttcGTGAGATTCTAATTTTAGAAGATCAAGA
TTGAAGTCACCCATAATGaaagcttgttttttttctcgagaAATTTTTTC
GAGTAAATTTGAGTAAAGAATATTAAATTCAGAACCAGGTTGCAGaaCAA
AGGCAAAGGGAAATACCGAGAAGGCATCACAAACAAAATTGTGAAGGTTG
TGGTGGAGTATACAACACTGCCAGCAAAACAACATGGCTGACGAAGAAAG
TTCCTTCAACCCAAAGAATCCCACAAATTTCAATGTAGACGCTCAGCTTT
TGCTAGTACCAGGAATACTTATAGTTCTTGGCGTAGGTTACCTTGTTTAT
CGATTGCTACAAAGTTATAAATTGAAAGAGcttgaaaaagaacaaaaacg
caagaagaaagaagaaaagaaaaaacgcTAGGAGTAGgatgacaattgaa
taaaacaaatttttcgaaTTGAATGTTACAATTTGACTGGTGGGGATTTA
GTTATTTTtctaattattattattattacaatGATCGTATAAATGTAAAT
ACCTTTTATTATTAATTATAACttcttttaatttaatataaaaagcaatt
taAGTGTACTAACTTAAAATGGTCAGAGCTCTGTTATTTTCGTTGCTAGA
AAAAGTACGTAACGCCGTAGGTTTCTGCTTATCCTCCaacgaaaaaagtt
tcttgcaTTTATTTGGTTTTATTCAAAgttaatctttttatttttacttt
tgacgcagccatccgccaaattaaatttcctccAAAAAACTTTTCGGTCa
tcccaaaaatttttttatattacaAAAAGTCA Run BLAST on NCBI transcript from alignment at sc0000128:564440..567958+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011462 ID=TCONS_00011462|Name=TCONS_00011462|organism=Clytia hemisphaerica|type=transcript|length=3519bp|location=Sequence derived from alignment at sc0000128:564440..567958+ (Clytia hemisphaerica)
GGTGGTCTGAAATAGTAGAAATAATATTGCCTGAATGAGTAATAGTTTCA
AAACTGTTTGTAAAAATGTTGTCAATCAAAGTCTTACTGTGGGGAGTAAT
TCTTGTTGGTCTAGTGATAAGTGGCTTGAAGAAATGAGAGAGATTGCTGT
gaatgaaattttctgtttcttcGTGAGATTCTAATTTTAGAAGATCAAGA
TTGAAGTCACCCATAATGaaagcttgttttttttctcgagaAATTTTTTC
GAGTAAATTTGAGTAAAGAATATTAAATTCAGAACCAGGTTGCAGGTAGG
TGTCTGGAACAGGACCCACCCAAGTGTAAGTGCAGTTTGTAAACATCAAA
TATAGAAGGATAAAACAGTAAAAATAAATGTGTCCATTATGTCCAGACTA
TCCCACCTTAAAATCTTTGAAGAAAATAaccagaaaattgaaaaaaatga
agaagaaaagtttTAGAGCCAAAAACGAAAGTTTGTTTTTCAGTTTTGTG
CATCCGCTGCTCTTTTCGCCCAGCTAAACCGATTCATGACACGGGGAAAT
ATTTCGGATTATACATACGCCCTACAAATGGGCGGATTGGGGCGTGCTAG
GAAATTTTACTTTGCTAAGTGCTGTGTGTACACGTGTTCAATGTCCATGC
TGTTGATTGGTCCaggtttttttcttcagaaCAAAGGCAAAGGGAAATAC
CGAGAAGGCATCACAAACAAAATTGTGAAGGTTGTGGTGGAGTATACAAC
ACTGCCAGCAAAACAACATGGCTGACGAAGAAAGTTCCTTCAACCCAAAG
AATCCCACAAATTTCAATGTAGACGCTCAGCTTTTGCTAGTACCAGGAAT
ACTTATAGTTCTTGGCGTAGGTAAGAAGTTTATTACATTATTAGTTGTTT
GGGTGAAAAGGCTGCCCCTTATTTTGGCTTGATGACTCATTCAGATTTAA
TATCTACTAGCTATCtcataaaagtttttaaaagggATCATATTTATGCC
AAAAGCTGCTAAAACGCTCCAGACCGAGACAgccaaaatttgaatttaaa
aatttatgaatttacattttttttaccaGTGTAAGGCATTCAGGTTTGTG
GCATAAATTTGGGGACCTTTTTTGGCACTCTATTAtaacaggaccctgcc
gacgcaccggacttaacgaacaccggacacgcgaaagtccggtgtaaaat
gagaattttttttaccaccggacaatttctacaccggacttaaggaagtc
ggatgtccggtgtcggagaaggatattttttcccaccgaNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatgcaacaccggact
tattgcgtccggtgtagcgaaaggatactttttgccaccggacaaataca
ccggacagtccggtgcgtcggcagggtcctattaTAACCTAACATGATAG
GACCCTCCTGGCGCTCTGGAAACTTCCAGAGTTTTCCggagcagctaaaa
aaacactttttctctCCGGAAAGTTTCAGAGTGCTTCCGGTGTTTCCAGA
GCAAGTGACTTTTAACACAttctaaaaaaaacgtttaaaaatatttgtct
CCAGTTCTTTGGTCGAAAAcaagaaatattgaaatatcgaaaaaatttaa
aaacgtGAGGTTTCACTAccatgagatttttttttaatatgcaTGTGCGC
AGTTAGTTTTTACATTAATAGCACAGCTAGCGCTATCGTAATTATATCAC
TGATATCTTGCTATCCGGAACACCAGAAATGCACTAGAATGTTCCGGAGT
TCCCAGTGCAGACCAATCCCCGAAAATCGTGCTCCAGAATCTCCCGGTGT
TCCGGAGCATGAAAAAACGGCCCTTTTTGCTCCAGACGTTTCCTAAGCGT
CCGGAGGGTCCTGACATGATCATCACATACTAAAATTGTAGCTCTAAATT
GCTTAGGAGAGCTATGCCTATGAACTGTCCAAAATATAGTGAAGCAGTTC
CACTCATTGcttctaatttcaacatccttctttaaagataggaataatag
gaagctcagaatcactgatggactcctcaactgattgctcagcaaagaaa
aatagtttcaatcAGTCATTTCGACCTTTCTATTATTCcgatctctaaag
aagggtgaccaaattagaagagggatgtcaacattggACCAACTTACGAT
AGCCTATAAAAACCTGCATCTTTATGATCAGCCGTCATAAAGATAGTCAG
TAGCTATACTATAGCTAGGCAGTTGGGGTCATTTTGGTTgtatatatttt
caattaaaagtggtcTTTCATTGTTCACAACTTGTCCAAGTTANGTGGGA
TTTTATGAGATTTTTccctgaggcataagcatcctatagagaaggtctgg
agaaagtttcagctatatattatttttttcctacaaacagcctgtacttT
TGTAACACGGCCACACTANAGAAAAGTTTTTGGCTAAAACTTCTTATACT
AGCTATGATTTTTAATCGCATCAAAATTGATCTTTTAGCAGCATCAAATG
ACCAGCATTATAACGCGCAACTGCTTCACTTCTATTTTGGGCAtgtagtg
gggtcgtttagcataatttacagggaaaaaataatatatagctgaaactt
tctccagaccttccctataggatgcttatgcctcaggaaaaaaatcCCCT
AGaatcatgttttgaaaatttcaaaNTCTCCTGAATTCTTCTTTAAAGTA
CGTCTAAGATGATCATGCATAAGGCTCATAGTTTTTTCGTGCCCAATTAA
TAGCCTATTTTGGATATGCTAAGCTACTCGAGAGTGAAAAACTGATGAGT
TTTGCTTTCTTTCTTGCTTTCAGGTTACCTTGTTTATCGATTGCTACAAA
GTTATAAATTGAAAGAGcttgaaaaagaacaaaaacgcaagaagaaagaa
gaaaagaaaaaacgcTAGGAGTAGgatgacaattgaataaaacaaatttt
tcgaaTTGAATGTTACAATTTGACTGGTGGGGATTTAGTTATTTTtctaa
ttattattattattacaatGATCGTATAAATGTAAATACCTTTTATTATT
AATTATAACttcttttaatttaatataaaaagcaatttaAGTGTACTAAC
TTAAAATGGTCAGAGCTCTGTTATTTTCGTTGCTAGAAAAAGTACGTAAC
GCCGTAGGTTTCTGCTTATCCTCCaacgaaaaaagtttcttgcaTTTATT
TGGTTTTATTCAAAgttaatctttttatttttacttttgacgcagccatc
cgccaaattaaatttcctccAAAAAACTTTTCGGTCatcccaaaaatttt
tttatattacaAAAAGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011462-exon-sc0000128-1491911889:564440..564734 | TCONS_00011462-exon-sc0000128-1491911889:564440..564734 | Clytia hemisphaerica | exon |
| TCONS_00011462-exon-sc0000128-1510915933:564440..564734 | TCONS_00011462-exon-sc0000128-1510915933:564440..564734 | Clytia hemisphaerica | exon |
| TCONS_00011462-exon-sc0000128-1575043694:564440..564734 | TCONS_00011462-exon-sc0000128-1575043694:564440..564734 | Clytia hemisphaerica | exon |
| TCONS_00011462-exon-sc0000128-1491911889:565119..565309 | TCONS_00011462-exon-sc0000128-1491911889:565119..565309 | Clytia hemisphaerica | exon |
| TCONS_00011462-exon-sc0000128-1510915933:565119..565309 | TCONS_00011462-exon-sc0000128-1510915933:565119..565309 | Clytia hemisphaerica | exon |
| TCONS_00011462-exon-sc0000128-1575043694:565119..565309 | TCONS_00011462-exon-sc0000128-1575043694:565119..565309 | Clytia hemisphaerica | exon |
| TCONS_00011462-exon-sc0000128-1491911889:567463..567958 | TCONS_00011462-exon-sc0000128-1491911889:567463..567958 | Clytia hemisphaerica | exon |
| TCONS_00011462-exon-sc0000128-1510915933:567463..567958 | TCONS_00011462-exon-sc0000128-1510915933:567463..567958 | Clytia hemisphaerica | exon |
| TCONS_00011462-exon-sc0000128-1575043694:567463..567958 | TCONS_00011462-exon-sc0000128-1575043694:567463..567958 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000128 | supercontig | sc0000128:564440..567958 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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