TCONS_00011471 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011471
Unique NameTCONS_00011471
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1591

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011471 ID=TCONS_00011471|Name=TCONS_00011471|organism=Clytia hemisphaerica|type=transcript|length=1591bp
AAACTTTTGGAATAATTATGCATTCTCGCTACCGTAATTGGTCAATCTCG
TTCGAATAATTTTACCGAGGAAAATTCGAGGAAAACAAAAACAGcaccga
aaatttttaaaaacgcatgtctaaaacaagatggctgcCACAGTTGAAGA
TATCAGAAAAAAGGTTCACTTAGAAGAGTTCAGGGTTTCCCATacTTCGT
CCTCAAGCTTTCCTGGTGGATACCCTGGATATGACGATTCTTGGAATTTC
AATACATTTAAAGAGAACTTTCGAGTTGACATAGTTTCACTAAATGAGAA
GGAAATGGAATTTGACATGGTGGGGATTGATGCTTCAATTGCTAATGCCT
TTCGTAGGATTCTTATTGCAGAGGTACCGTCAATGGCCATTGATAAAGTT
TTTATATTCAACAACTCCTCAATCATTCAGGACGAGGTCCTTGCTCACAG
ACTTGGACTGATACCAATCTTTGCTGACCCAAGGTTGTTCAACTTCCCTC
CAACTCCAGTAGAAGGCAAAAACTTGACTGAGGAAGAACAACTTCACACA
GAACCTGATGTTCATTTGGTGTTCGAACTGAAAGTGAAATGCACTATGAA
TCCTGAAGCCCCCAAAGATTGTGTCAACCCTGAAATTATGTACTTGAATA
ATAAAGTGACAACGAAAGACATCAAATGGATACCTATAGGTGATCAGGAG
GAACAGTTTGGTGTTGATGGCATACGCCCTGTGTTTGATGACATTCTAAT
TGCCAAGTTGAGACCTGGACACGAAATCGATCTGAGAATGCATTGTGTCA
AAGGAGTTGGTTGTGATCATGCCAAGTTCAGTCCAGTAGcgACTGCTTCA
TATCGGTTATTACCATCGATCACATTGTTGGACACAATCACGGATGACTT
AGCAGACCGTCTCATCAAGTGTTTCAGTAAAGATGTCATCAAAACGAAAA
CCAAAAATGGAGTAAAAAAAGCATACGTTGCAGACGCACGAAAAGACACA
GGGATGCGTGAAATATATCGTGATGAGGTGCTAAGGGACAAAGTCAAACT
CGAAAAAATAAGAGACCATTTCATATttTCAGTCGAATCTACAGGTGCAC
TACCCCCTGAACAGCTGGTCGAGGAAGCCATTAAGATCTTACACGCCAAA
TGTCAAATTTACGTCGACAAACTGAATAGTTTatgatgaaaagaaaagaa
ataggAAAATGTCATGGTTTATTCGTGAAGTCACAGAGAGGCCATATAAA
AAATGGCGGACTCGATTGCATATCTTTTGATTGTACATGAGGAAAGCAGT
CAGCGCGGGAACCTAATGATCTGATCCACCAATATTTGGATGGTTGCTTG
GTGAGAGATCAAATAATGGAAAGAAGATTTTCGTTTTTGTTATGTTTCTC
GTACTGAATAAAAGGACacgatgaaaataaaatgtcgTGTTTGGAAAATC
ATGATGGGTTGGCATATCGTGAAAAAGACATTtcaaaaatgagagaaaaa
taTATTAGCACATTTATTTTTAGCAGAGGGAGGTATAGTAAACGGTGTTG
TGGAATTTgttgtgaaaatttgaatttcagaTTTCTTTCTT
Run BLAST on NCBI

transcript from alignment at sc0000128:120715..133902-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011471 ID=TCONS_00011471|Name=TCONS_00011471|organism=Clytia hemisphaerica|type=transcript|length=13188bp|location=Sequence derived from alignment at sc0000128:120715..133902- (Clytia hemisphaerica)
AAACTTTTGGAATAATTATGCATTCTCGCTACCGTAATTGGTCAATCTCG
TTCGAATAATTTTACCGAGGAAAATTCGAGGAAAACAAAAACAGCACCGA
AAATTTTTAAAAACGCATGTCTAAAACAAGATGGCTGCCACAGTTGAAGA
TATCAGAAAAAAGGTTCACTTAGAAGAGTTCAGGGTTTCCCATGTAAGTC
GATTTTAATCACCTTGCCATTATTCTTACTTTATTACAATAAGATTCATC
TTCCACTTTTCTAGCAGAAAAAGACCAGGGAAGCTGAAAAATTAGTAGCT
TTAGAAAATTACCATAAGTTGGTCTAATATCATCAACATCTCTCATCTAA
TTTCGAAACCCTTCTTTAGAGTTGAGAATTAAAAAAGGATGGTAAGAATT
GTTGATGGAAGGCATATTTCTTTGCTTAGGAATCAGAGAAGAAAAATTCC
TTAGTTTATCAGTGATTCTGACCTTACCAGGGGATGTTAATCGAAAAATT
CGATCACCAAATCAATCAAACTTAATCGAAGTCAATCGAAAATGATTGAT
TTTCGATTAGCCAAATTGATCGAACGCCAATCGAATTTCACATCTTTTTT
TTGATTGGATTTGATTACCGTTCGATTACCGTTCGATTGGTGTTCGATTG
ACGTTCGAATTGTTTCGATTAGCTTCAAATTTGCATATACTTTTCGATTG
ATTCGATTAGTTCGATTAATATGTTCGATCAATAGACCTTTTTTCAAAGA
GGCCACCCTGTTGAATAATTATGTAGTCCAGCAGAAAAACAATGGTAAAA
CCATGCATAATTATTACAATATGCATGATACAGTAATTATGCATGGCTCT
ATCATTGTTTTTATGGCTGGACTACATAATTATTCAACAGGACGTCCTCT
TTGAAAAAAGGTCCATTCGATTTATGTTCGATTGGCATTCGATTAATTCG
ATTTATGTTCAATTGGCATTCGATTGATTCCATTTATGTTCGATTGGCAT
TTAATCAAATTTTGTTCCTGTTTTTTTGTAATTTCGATTTTCGTGGTTCC
GTATTTCCTCTATACCACCGCCCTGTTTTAAGCGCTCCCTTAATATAAGA
GCACCCTAATCTCAAGTTTCGAAATAAATGCCTCCCCCAATAAGCCCTGC
CATCCAATAACCACCTGATTGATCGAGTGCGGCCGGGGATTCTGCACTTG
TTCGACAGTACACTTGTTCGACAATACATTTAGTTGACAAATCGTGAAAA
TTGTCGGCCAAATGTATTGTCGAACAAGTGGGAAGATCAGTTGTCAGACT
TCCCAGTTGTTCGAAATCCCACTTGTTCGACAATACATAATTATCCGATT
GTTCGACGACCCACTTGTTCGACAATTATGTATTGTCGAACCGGCAGGTC
CAAAATGCATAAAACATAATGCATATTGCATAATGCATAATGCATAATAT
TTGAAAAATGTCAATTTTAGAGGCTATAATAAGGAGAATTTGAAAGATAA
TACAACAAAACAAATATACCATTTTCTACCAAAAAATAAAGGGTAGAAAG
CTGTAAATCTGTATTTTAGATGATGAAGAAAATCCATGATCCACTGAAAT
ACTGATCTGTTGCATTTTCTTATTATTTATGCTGGCGGAAAACCCTTTGT
TGTTGTGATTCGAATGTTTTCTCTTTTGTTCGAATTCGAAAAGTAAATNA
TGTTATTTAGGACCCCCGTTTATTAATTTTTAAGAATATTTTCACCTGTC
AAAGAAAAGGTCCCTCATAGACGATGCTATTGTTCGTGTAATATATTATT
ATGATATTACGATATAACATAGTTGTATATTATACTAGGTCATAGTTTGC
ACTAACTGCCACCGCTCTCATAAAGGTCACGTATTTAAAACAAAGCTTAA
CAAAACGACTTAAAGAATCATTTCTCGTTTTTTTAACCCGGTTTCGTTTC
TTTTAAATCTTCGAGTTATTTTCCTTCCTGTAGATTCTCGGATTCTCGAG
TTATTTTGGCGTTCACAGCAGAAGACTCAAAACACACCCACACACTTTCT
AGCTTTCATGCAGTAGGGTGGTCCAATGGCGGAAAATGCTAGCGGCGTGG
AGGCAAAAAACAAAGTTGATATTTGTTCACTTTTTGCTTCCCCGATTTTT
GCCACTGGGNAAGGAGAGTTTTAGAAAATATAAAATCGTTCTGTAAATTA
CACAATACTATTATGCATTATGCAATATGCATTATGTTTTATGCATTTTG
TAACTGCCGATTGTCGAACAACTGTATTTTCGGACAATTACGTTGTCGAA
CAACTGATCATATAGTTGTTCGACGACCCACTTGTTCGACAAAAGTTGTC
GAATTATTTGAAAAATTCTGAAGTTGAATATCGTTAACCTACCCTGAGAT
CAGATCGTGGTTGTAATCTGACCAATATGCAATCTCGAAATCGTAAAGGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTT
ACTCTTGATATGAACAACTCGGAAATGTTAACTCATTTTGCGTAACTCGA
CATTCATTTTAAAGACCGAAAAAAATTTCATCGCGCGGGCCGCTTGGAAA
TTTCCCGCCCTGATAGAGGAATGAGAAAATGAGTGGAAACAAATAATTGT
CTAACAACTGTATTGTCTAAGTCTAACAACTGACAAGTGGGCGTCAAGTT
GTTCGACATGTCAGTTGTTCGACATGTCGACCAAGTGAGCTGCCGAACTA
CTATATTGTCGAACAACTGACATGTCGAACAATTTGACGCTTACTTGTTC
GACATCCCAGTTGTTCAACTTTTATGTCGATATATTGTCGAACAACTGAG
ATGTCGAACAAGTAAGCGTCGACCAACTGGGAAGTCTAACAACAGATCTT
CCCAGTTAGTCGACAATACAGTTGTTCGACAATTTTGCTAAAATGTCGAA
CAACTGAGCTGTCGCACAAGTGTACTGTCGAACAAGTGACCTAGGACCGT
GCGGCCTGCGTATTACGTGGGAACCAACCCCACAGAACTATCTCAGTAGT
AATAATTAAAGACAGTCCAGAAATATAAATAAAATCTTAAGTTCGAAATT
AGCACTGAAATAGGATACAAACGGTATTTCGGAATTGCAGAATTCGACCT
TGTTTTCTTCGGAATTTTGGAAATCAGGCAAAAGGTCTTCGGTATTTCAG
AATTCTGATATTTTTTCGGTATCGGAAATCCATGAATTTTTGCTTCCAAA
TATTGGTTTCATAAGTTTTTTATCCCCCTTTTTCGGAATTCATTACATAC
CCGGGCCCAGTACCTACCTACTTAATGTGGCATACATAGTTGAATAATCG
ATCAATTCATTATATTCCCGGTACTACGGTTGGAAGATGATGGGTATGTC
CGGATGGGACCCCAAAAAACCAACCTTTAGAGAGACTGATTTTTGCTGAA
AAAGTGACCCTTAAAGAGACCCTTGAAAAATTTCCTTCGGAATTTGAAAA
ATTCTCTACCCTTAGAGAGACTTTTCAATTTTTTCTCTCTAAATCAAAAA
AATTTCCTAGAAATCTTGAATTTTCCGACCCTTAGAGAGACTGATATGAA
TTTTTGTAATTTTTGCTACCCTCTTAGAGAGACTTTGAAAGGTGAAAAAA
CCGACCCTTACCGTCCGTCCTCAGGAATTAAGCAAACATTCTTCCGCTAA
CTTCTTTTGGCGGGAAGGGAATTTCATGGTGGTGTTACAAAAAATCTTCC
AAATTTAGCCCTGCAAAATTTAAACTTTTTAAAGTAAAATCGAAGTTGAT
CGAACGTTAATCAAAGTTGATTGAACGTTAATCGAAGTTGATTGAACGTT
AATCGAAGTTGATCGAACGTTAATCGAAGCTCGTCGAACGTTAATCGAAG
CTCGTCGAACTCAATCGAAACCAATCGAATTTCACATATTTTTCGGTTTC
AATTAGAATTGGCGTTCCATCAATTCGGCTAATCGAAAATCAATAATTCG
ATTGGATTCGAGTAAATTCGATTAATTCGATTGGTTCGATTGGCAATCGA
ACGTTCGATTGACATCCCCTGGACCTTACTGTTATTCCTATCCTTAATAC
AGTGAGTGGTGCTAAATCCGACAGCCCTGCCTAAATCCGATGGGGTCTTT
CAAAGATACAAACTAAAATAAAAACAAGCCTTTCGCTATGACGCAACGAA
GATACTAAAGTGTCAACTAAACTGAGAGATTTGATACATTGAACCAATTG
AACCAAATAGAAATAACAATAATTGCTTCTTATACAAAACATAATTTTTT
ATTGCAATATGTACAACAGCAGTAACAGCATCATAAAAAGTAATTATTTT
TTTAACAATTCACACGTTTTAAATTACATTAATTGGCATCTTGACATTAT
AGCCATCTTGTTAGATGTTTTGTTTCGAGAGTTCTTGCAATAGTTTATCG
TTCAACTTGCCTTGGAGAGGGAATGTTTGTAAACATAGAATTTTTTTCAT
AACAGTTATTTGGGGGGTCGGAATTAGGCAGGGCTGTCGGATTTAGGACC
ACTCTCGGTATAAAGAAGGCGAAATTTTGTTTGGAAGGAAATGCGAAAGT
ATCTTCAATGCATTTCTCTAGAAAGCAAAGTAAGAGATTGTTGACAAAGC
AAAGTATAGAGAGTTGATAGAAAGCAATAGATAAACAAATGAATAAAATT
GCAAGGTAGCGAGTTGATATAGCAACAGATAAACGAGTGAAGAAAGTTGG
AAAGTAGCAAGTAGATAAAGCAATAGATAAACGAGTGATTAAAGTTGTGA
GGTAGAAAGTTCATAAAGTAATAAACAAACAAACGAATGAAGAAAGTTAG
GAGGTAGCAAGTTGATAGATAAAGCAATAGATAAACAAATGAATAAAGTT
GCAAAGTAGCTATGATAAAAAGCAATAGATAAACGAACGAGAAAAAAGTA
GCAAAGTAGCAAGTTTATAAAGCTATAGACAAGCCAAATGAAGTAGCAAA
AAGTGTTTTCTTGTAATTTTTTAACTTCGCATTTTGCGAAGTGCAAAGCT
ATAATTCAAACCCTGAGCTTCAGCATAACTAACCTCTTTCACCTCTTGCT
TCTCTTCAATTATGATGTTCTCGATCTTGGTTTCTATCTTCTTCTCGAGT
ATGCTCATCTTTGTTTCAAGGCTTTCTTTGATTTCTTTTGTAATAACATT
GACATCATTTGATTTCAGTTGGGAAATTTCTTCATTTTGAACTTTCATGT
TTTCACATGCTTTAATTTCCTTTTGAAGTCCTTCGATTTGGTGTTTCTGC
ATGTTTCAACACGTTCCATCAGCTTTGGCGAGATCTTAAGAGCCAGTTTT
TTTAAGAATGGGGCAGTTCCAATAGTTTGAAACTTAGATTTTTTTCATTT
TTGGGCATTGCACATAGAAAGTTTTTTGATATAGAACCATATGCTTACTC
AAATCAAAATGAGGAATTGTTTTTTTGGTGATTCTGAAACTATGGCATTA
TACAATTTTCACAAAAAATCAAATTTTCAAAATGGTAGCTGGAGTTATGA
CGTCACAATAACAATTTTGATTTTAGGGGTATTTTATTTATTGAATGAAA
TTTCTGCCTCAATAAGCTATCAAAGAGTACCATATTTGATTTTCCTAGAA
ACCTTTCTGAAATGTGACAAGGAATCATGATTTTCAGCTAAGATTTACTT
TCTAACTGCCAACTACTGCCTGCAATAGAATGACCTCAGCTATAGTCAAA
AAATTGAAAAAAAAGCCTTTTTGGCCCAAAAATGCACATTTGACAACTTT
TTTCACCTAGTTTCATAGCTTTTATAAGAAAGATTCATCACAACCCTTAT
ATTACGACAAATTCAGTCATAGCTCCAGCTTTTGATTTTGAAAATTTTGA
TTTTTTTTGAAAATTGTATAGTTTACCGGCCATAGTTTCAGAATCACCAA
AAAACAATTCCTCATTTTGATTTGAGAAAGCATGGTTCTATATCAAAAAC
TTTTGAAGTGCAATGCCCAAAAATGTCAAAAACTTCAAATTGGTATTAAT
CCACCATTATGGATTTTCAGACCAAAATATTTCGGGATTTTACTCAGTTC
ATTGTACTTAAAAACATACCCAAAAATGAAAAAAATCTAAGTTTCAAACT
ATTGGACCTGCCCCGCTCTTAAAAAACGTTCTTAACGCAACTTTGGTATT
GAAAACTTTGAGATTTTAACGTTAAGCAAATCTGTATTTGGTAGATTGGT
AGCTGGGAACAATCATAATGAACGTCTAGGTGGCACTTCCTGCAGGTCAG
AGTGTCTTTTGGTGTTGTTTCTTCTCTAATAATGCATTTTGTTGGGGTAC
AAACCTCATTTTCAAGCTGCAATTCTTGGTCATTTTCATCGATTTTTTCC
TCCATTTTCCTTGCGAGATTTGCCAGCTTAAATAAGAAGTCTTGATGCGA
AAAAGTATTTAGTTATGCTTATTTATGCTGACATCATCAAAATTTGACAA
AGTTTTTGTTTTTAAAAAGATTGACTTCAATGATATTCATCCTTGGTTTG
AAAGGATTTAAATGAATCATTATTGAGAAATTCAATTTGTAGTTTTTATG
ACATTATCAATTATGACATCATTATCAGTTTTTACAATTTTTAGTGAAAA
TGAGCAAAAAACAATTAGGTTTAACGCCAGGTTAGAAGCTACATCATGGT
ACCCTTTGTTTTCAGTCATTTGTTTGGTCATTTTCCGTTGACTTATGTGA
TCTAAAAATCATGGTAATTTTCACGTATTTGTGACATGCCATAACTTACC
CGAGATTATTTGTTGCTTTGAATTGCACAAAAGTTGGATCTATAATAGTT
GGAGAATGTGACGTTCTATTGAGTAACAAATCACTCAGCCATATTATTAT
TACTATTTCTACTTTTCCTCAGCCCAGTACAAACAGGATAAATTTATCTT
GTTCCTAGCTAACAGCTGTGTTGTAATGATGAATCAATTGTATGATGTTA
TCATTTAAAAAAATTATGCCAGAGTAATTAGTTATCCAAAAGACTGTCAC
AACTATTACCTGAATACCTTTCCTGTAATAGTTCAAAATCGAAAGATGAT
TGGAACATTTGATTGGAAAATTTCACAAATAGTATTTTTTCAAGGACATT
GTCCTTTCTCAAATTTATGTTTACTAGTTGTATCAAAATTAATATTATCA
TACCAGTAAGGCCAGCTACCTTTTGAATATGTTTTTATTGATTTTTTTTT
AGACTTCGTCCTCAAGCTTTCCTGGTGGATACCCTGGATATGACGATTCT
TGGAATTTCAATACATTTAAAGAGGTTTTAAGATTTGAAAATAATCTTTT
TGATATCACAAATTTTATGATCAGTTTTGTTGCTATTGAGTGTCATTGGG
ATCTTTTTTTGGGAAACCATTTGTAAGAAAGAGAAACATGGTTAAAAAAT
CCAATGATAATAACCACATTCTTTTTAACTGGTCAACATAAAATAAAAAA
GAAGCATGATATAAATACCAGAAAAGATCTAAGCAATATTTCTTTGTATT
TATAGAACTTTCGAGTTGACATAGTTTCACTAAATGAGAAGGAAATGGAA
TTTGACATGGTGGGGATTGATGCTTCAATTGCTAATGCCTTTCGTAGGAT
TCTTATTGCAGAGGTATATAAATTAATTAATAAATTTTCACAAATAACAA
TAATTCGACTCATATTCTGATATCAGGCTTGTCAAATTTAAGAAATTATA
CATCTTATGATTGTCCATACATCTTCTAAAAATCAGACAGCTCACTCAAG
GCAAGAGACTTCTCTTAATGTATAGTTCTCTTAAAATATAAGTTCCCCTA
TATTTATGCTGTTATAGTAATCACTGTGTGATTTTGTTCACTAAAATAAT
TAACCCTCCAACACAACGCCATATTATTTTTTTGCTTGGAGCAAAGGCGA
TACTACTTCATATTCTAATGTCTTCAGAAATTTGTATTTTTACCAACATT
TTGTCAATTTTTAGAAAAAGTATTTTCGCATCTTTAGGTACCGTCAATGG
CCATTGATAAAGTTTTTATATTCAACAACTCCTCAATCATTCAGGACGAG
GTAAACATTCAACCAGTCAACTTTTTTCAATAATAAAACCCATTTTGAGC
TGGAAACTTAGAAATTAAGTTTAAAGAGAGTTATATCAACTTTTTGGTTC
GTTTTTAAAAAGTCACTCTTCACTCGTTAATTGCTCGATCCTAGAACATA
ACTCAAGTAGAGACTGGTTGAGAACATATAGGGGAAATTTTCCTTACAGA
GCTTAGATTTTCAGCAAATTGTCTGCTAATTGTTTTATTTTATTCCTTAA
ATTGATATTCACCTCTTTGTTCATATAGTGGTAGTTCAAAATAATTCAAT
AGACTTAAAAGTCGATGAGTATGTAGAGAGACTCGATTTGTAACCAGTTT
GAATAGTGATCAACCCTTTCTTTCAGGTCCTTGCTCACAGACTTGGACTG
ATACCAATCTTTGCTGACCCAAGGTTGTTCAACTTCCCTCCAACTCCAGT
AGAAGGCAAAAACTTGACTGGTCGGTATAAAGTTATGATTTTTTTCATTA
TAATATTCTTGGCTTGGTTTTGTTACTTGTCTGCTGTAAATTTTCCTTGC
AATATTGCAAAGAAGTGTGGACAATTCATTTTACGGCAGTTATTGGACAA
TAACTTTTACAATACTCCTCCTAGACTCATTGTCCCTATTATTAAAAGTA
AGCTAATGGACAGCATTGCACGCTTCTATCGTGATGATATTTTCATATTT
GTTTTGTTATAGAGGAAGAACAACTTCACACAGAACCTGATGTTCATTTG
GTGTTCGAACTGAAAGTGAAATGCACTATGAATCCTGAAGCCCCCAAAGA
TTGTGTCAACCCTGAAATTATGTACTTGAATAATAAAGGTATTTCAAGCA
AGAATTTACCTACAAACTAAACATCAGATACGGAATTCCCTCAACTTTGG
CTCTCCAGAGAGAGAAAAAATAAGAACATTTTTGAAACATTTGACTTACA
GACATTACATACCGACTCGAAGTTTTCCCCTGATTTCCTTTCCCACAACA
TTTTTTTCCTTATCATATTGAGATAGTTTATCATGAGAGAATGGATGATT
ATATTTTCAGTGACAACGAAAGACATCAAATGGATACCTATAGGTGATCA
GGAGGAACAGGTAAGCAAGTTCAAGTCATGGCATCGATACCCAGTGTTGA
AGTGCTTCCATCTCAAACGGATTTTCGTCTCAGTGAAGTACATAGCTTCA
GCCAGGTTTTTAGCTCCCCCCAACAAAGGAAGGTCCCCCCCGACAATTTA
GCTCCCCAAAAAAAATTGCCTTGTGCTAGGCCCCCTATGCGAGTACAGTA
AGACTGATAAATGAAAACTAAATTTTACTTGTATTAATATTTATGTTTAC
AAATCTTTTGCTTTTTATATTTCATTTAATAGTAAGATAAGAGATCTTTT
GAAATTAGCTGAACAGCCCCCAGAGTCTCAGTTATATCATCAACTCCCCC
AACAATCTAGTCCCCCCCCCCTGTAAAAAATAAGGGGGGGGGCCTGATGC
TATGAAGTATATAAAGAGGCTTTTCCCTATCAAAATTCTCCATATTTCAC
CAAAATTTTAAGAGCAATTGCTAATTTGCGGTGTAAAATCCATTTTTCCA
TTTCAGACGAAAAACTTTGTTTTGACCACGGTATATTTTTTACCAATATT
AGAAATATATAAGAAAATAGAAGAATACTCCTGGAGGCTAACCAACTAAA
TTCCGTGGATATTGCAGGAGCTTTCAATGTTAAAACATTTCCAGTGGTTT
CTTAACAATATAAACAGATACAAACTCATTTTATCCATCTCTGTCCACTT
TTATATATAGTTTGGTGTTGATGGCATACGCCCTGTGTTTGATGACATTC
TAATTGCCAAGTTGAGACCTGGACACGAAATCGATCTGAGAATGCATTGT
GTCAAAGGAGTTGGTTGTGATCATGCCAAGTTCAGTCCAGTAGGTGAGTT
GCCTCTACAAATAATTGGTTGAGTTTTTCTTTAATAAATTTTGTACAACT
GTCAATGAAATATTATATTCAAAGTTTAACAACCTTGGTCTTTTGCCAAG
TTAGACATTACCCCCCCCCCCTGGACGTGACTCTCAACCTCTTTCTACCT
CATTGCAGATGCAGAAAAATTACAAATGGTATATGTTATGTTTATGATAG
GTCCCATATTGGAAGGAATTATTCTATTATAAACGGCTCTTACGAAATTC
GGACAAGTCGGTTATCAATGAAGTAGTAAATATTGAAGAGCTGATAGGTC
TCTCTGGCGTTTTAAACCACTTATTTTTGTATGTCATATTCAAATTCCTT
ATAAAGTTACTGATTCTTGCTCCTTTGTACTTGTGGAAACATGGAAAGTT
GGACATGGGTCTAGTCTAGAGCGAACTAGAAAATTAGAAAGTTTTTCCAG
AAATATTTGAAGTATAAAACATTTTTTAGCGACTGCTTCATATCGGTTAT
TACCATCGATCACATTGTTGGACACAATCACGGATGACTTAGCAGACCGT
CTCATCAAGTGTTTCAGTAAAGATGTCATCAAAACGAAAACCAAAAATGG
TGAGTGCAATATCTCTCACAACCTACTACTCGTACTACTAAGTATTTTCA
TATGTACATTCGAGAGGTTGCTGAATTCGAGCCATCAAATTACTCGCGTC
TTTCTGTGATTTTAATTTAAACGTTGCTCTCCACATATGCAAAGGTCATA
CACTTTCATGGAAGCATGGAGAGTGTCTTTGGCAACAGAATTCTTCTCCA
ATTAAGAAAAGAATTTGGTCAGTTATGATCCTTGTATGACTTTCTTAATT
TAATTAGTGAAGAGACTTCTTCTTTTGAATTTAACAGGAGTAAAAAAAGC
ATACGTTGCAGACGCACGAAAAGACACAGGGATGCGTGAAATATATCGTG
ATGAGGTAATTCTATATTGATATATTACATTGGTGATGTCTATAGAACAT
TCCAGATACTATAAACCAGACCCCATTACTCGAACAGTTCGAGAAACTAA
CTACTCGAAATTATCGAGTCTGGCATAAACATTGCTTCGTTGCGGTAACC
CATAACGATGAAAGTAAATCTCGTTGTATTAATTTCTAATAATAATTTAA
TGATCATACTTCTTAATTCTTACTTTTTAGGTGCTAAGGGACAAAGTCAA
ACTCGAAAAAATAAGAGACCATTTCATATGTAAGTTTTTTAATTCCGTTT
ACATTTTGTCTTTAAAATTAAAATATACTGTGTCCCGAAAAAAAGAACGG
TTCAAAACGGGAAAGTTATTTCGTTTGCGAAAATCAAGTTGTCCATCGTT
ACTTTTCCTAGGTAGGGATAGTTTAGGGATACGAACCATGTTCCACATCT
GCAAAGAACCATGCTCATAGCCTAGGGAATCGATTTTTTATGGGTAAATT
AGTATGCTTTAACTTTTCAACATTTTTGAGATATTTTATTTGCCTTCTTA
CGTTAGATGCTATCATTGCTCATATGTTTTGTTTGTTGATGAAAGAAATT
AATCATAATTTTCATTTATTTAGTTTCAGTCGAATCTACAGGTGCACTAC
CCCCTGAACAGCTGGTCGAGGAAGCCATTAAGATCTTACACGCCAAATGT
CAAATTTACGTCGACAAACTGAATAGTTTATGATGAAAAGAAAAGAAATA
GGAAAATGTCATGGTTTATTCGTGAAGTCACAGAGAGGCCATATAAAAAA
TGGCGGACTCGATTGCATATCTTTTGATTGTACATGAGGAAAGCAGTCAG
CGCGGGAACCTAATGATCTGATCCACCAATATTTGGATGGTTGCTTGGTG
AGAGATCAAATAATGGAAAGAAGATTTTCGTTTTTGTTATGTTTCTCGTA
CTGAATAAAAGGACACGATGAAAATAAAATGTCGTGTTTGGAAAATCATG
ATGGGTTGGCATATCGTGAAAAAGACATTTCAAAAATGAGAGAAAAATAT
ATTAGCACATTTATTTTTAGCAGAGGGAGGTATAGTAAACGGTGTTGTGG
AATTTGTTGTGAAAATTTGAATTTCAGATTTCTTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006428XLOC_006428Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011471-exon-sc0000128-1575043694:133710..133902TCONS_00011471-exon-sc0000128-1575043694:133710..133902Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1575043694:125529..125600TCONS_00011471-exon-sc0000128-1575043694:125529..125600Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1575043694:125190..125297TCONS_00011471-exon-sc0000128-1575043694:125190..125297Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1575043694:124753..124815TCONS_00011471-exon-sc0000128-1575043694:124753..124815Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1575043694:124283..124376TCONS_00011471-exon-sc0000128-1575043694:124283..124376Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1575043694:123915..124040TCONS_00011471-exon-sc0000128-1575043694:123915..124040Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1575043694:123643..123692TCONS_00011471-exon-sc0000128-1575043694:123643..123692Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1575043694:122810..122942TCONS_00011471-exon-sc0000128-1575043694:122810..122942Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1575043694:122204..122323TCONS_00011471-exon-sc0000128-1575043694:122204..122323Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1575043694:121848..121915TCONS_00011471-exon-sc0000128-1575043694:121848..121915Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1575043694:121574..121622TCONS_00011471-exon-sc0000128-1575043694:121574..121622Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1575043694:120715..121229TCONS_00011471-exon-sc0000128-1575043694:120715..121229Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1510915933:133710..133902TCONS_00011471-exon-sc0000128-1510915933:133710..133902Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1510915933:125529..125600TCONS_00011471-exon-sc0000128-1510915933:125529..125600Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1510915933:125190..125297TCONS_00011471-exon-sc0000128-1510915933:125190..125297Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1510915933:124753..124815TCONS_00011471-exon-sc0000128-1510915933:124753..124815Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1510915933:124283..124376TCONS_00011471-exon-sc0000128-1510915933:124283..124376Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1510915933:123915..124040TCONS_00011471-exon-sc0000128-1510915933:123915..124040Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1510915933:123643..123692TCONS_00011471-exon-sc0000128-1510915933:123643..123692Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1510915933:122810..122942TCONS_00011471-exon-sc0000128-1510915933:122810..122942Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1510915933:122204..122323TCONS_00011471-exon-sc0000128-1510915933:122204..122323Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1510915933:121848..121915TCONS_00011471-exon-sc0000128-1510915933:121848..121915Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1510915933:121574..121622TCONS_00011471-exon-sc0000128-1510915933:121574..121622Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1510915933:120715..121229TCONS_00011471-exon-sc0000128-1510915933:120715..121229Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1491911889:133710..133902TCONS_00011471-exon-sc0000128-1491911889:133710..133902Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1491911889:125529..125600TCONS_00011471-exon-sc0000128-1491911889:125529..125600Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1491911889:125190..125297TCONS_00011471-exon-sc0000128-1491911889:125190..125297Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1491911889:124753..124815TCONS_00011471-exon-sc0000128-1491911889:124753..124815Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1491911889:124283..124376TCONS_00011471-exon-sc0000128-1491911889:124283..124376Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1491911889:123915..124040TCONS_00011471-exon-sc0000128-1491911889:123915..124040Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1491911889:123643..123692TCONS_00011471-exon-sc0000128-1491911889:123643..123692Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1491911889:122810..122942TCONS_00011471-exon-sc0000128-1491911889:122810..122942Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1491911889:122204..122323TCONS_00011471-exon-sc0000128-1491911889:122204..122323Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1491911889:121848..121915TCONS_00011471-exon-sc0000128-1491911889:121848..121915Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1491911889:121574..121622TCONS_00011471-exon-sc0000128-1491911889:121574..121622Clytia hemisphaericaexon
TCONS_00011471-exon-sc0000128-1491911889:120715..121229TCONS_00011471-exon-sc0000128-1491911889:120715..121229Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000128supercontigsc0000128:120715..133902 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
31.3139	31.0256	23.3984	19.5134	29.089	21.1718	27.0024	32.7948	27.9034	24.8301	18.6907	25.7993	24.8793	28.2669	23.0088	22.3436	22.1903	21.6109	7.8047	11.0501	25.3224	28.8741	32.1166	30.5365	33.8616	35.8989	10.1048	9.16632	18.549	22.0918
Blast
[Close]
BLAST of TCONS_00011471 vs. Swiss-Prot (Human)
Match: RPAC1 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens GN=POLR1C PE=1 SV=1)

HSP 1 Score: 378.637 bits (971), Expect = 8.317e-127
Identity = 200/353 (56.66%), Postives = 266/353 (75.35%), Query Frame = 2 
Query:  131 MAAT--VEDIRKKVHLEEFRVSHTXXXXFPGGYPGYDDSWNFNTFKENFRVDIVSLNEKEMEFDMVGIDASIANAFRRILIAEVPSMAIDKVFIFNNSSIIQDEVLAHRLGLIPIFADPRLFNFPPTPVEGKNLTEEEQLHTEPDVHLVFELKVKCTMNPEAPKDCVNPEIMYLNNKVTTKDIKWIPIGDQEEQFGVDGIRPVFDDILIAKLRPGHEIDLRMHCVKGVGCDHAKFSPVATASYRXXXXXXXXXXXXXXXXXXXXKCFSKDVIKTKTKNGVKKAYVADARKDTGMREIYRDEVLRDKVKLEKIRDHFIFSVESTGALPPEQLVEEAIKILHAKCQIYVDKLNSL 1183
            MAA+  VE++R +V L EF V +  ++ FPG Y GYDD+W+ + F++NFRVD+V ++E  +EFDMVGIDA+IANAFRRIL+AEVP+MA++KV ++NN+SI+QDE+LAHRLGLIPI ADPRLF +       +N  +EE   TE D  L F L+V+CT NP A KD  +P  +Y+N+KV T+ + WIP+G+Q + F    IRPV DDILIA+LRPG EIDL MHCVKG+G DHAKFSPVATASYRLLP ITLL+ +  + A+ L +CFS  VI+ +   G K A VA+ R DT  REI+R+E L+  V+L ++RDH+IFSVESTG LPP+ LV EAIK+L  KC+ ++D+L+++
Sbjct:    1 MAASQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY-------RNQGDEEG--TEIDT-LQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDELDAV 343
The following BLAST results are available for this feature:
BLAST of TCONS_00011471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPAC18.317e-12756.66DNA-directed RNA polymerases I and III subunit RPA... [more]
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