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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011473 ID=TCONS_00011473|Name=TCONS_00011473|organism=Clytia hemisphaerica|type=transcript|length=5063bpRun BLAST on NCBI protein sequence of TCONS_00011473-protein >TCONS_00011473-protein ID=TCONS_00011473-protein|Name=TCONS_00011473-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1399bp MVLNANMYISVILLVNFGLTSSLVNVQNDKFHGYINGIYQTFKDDTGASWRun BLAST on NCBI transcript from alignment at sc0000128:165496..181050- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011473 ID=TCONS_00011473|Name=TCONS_00011473|organism=Clytia hemisphaerica|type=transcript|length=15555bp|location=Sequence derived from alignment at sc0000128:165496..181050- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000128:165496..181050- >TCONS_00011473 ID=TCONS_00011473|Name=TCONS_00011473|organism=Clytia hemisphaerica|type=CDS|length=4200bp|location=Sequence derived from alignment at sc0000128:165496..181050- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011473 vs. Swiss-Prot (Human)
Match: PERE (Eosinophil peroxidase OS=Homo sapiens GN=EPX PE=1 SV=2) HSP 1 Score: 269.24 bits (687), Expect = 1.558e-75 Identity = 191/597 (31.99%), Postives = 284/597 (47.57%), Query Frame = 1
Query: 2437 AETIKTSERRIDAKWNNQENKLWGAAGENLINLAPHAYADNISEPASACTRHHKLANKCPFPKEFSGVGSTRPSPREISNMLMAQKDD-IISKRNMSDFTMHFGQFFSHDNDLSTPLP-RQDFMQ-------FHQNQIWMPINIPKGDVHFDPYSTGKEKMPFIRTTFSGCSGQYKEGKAPRKQFNVITSIIDASNVYGSDEGRAKHLREFKD--------GRLRMGPNLMLP---KNKDFMKMANPVGRPADQLYIAGDNRANVQPGLAAIHTLFVREHNRLAHEYVLKNPAATDEETYQHARRFLIAEMQAIAYREYLPALLG---GDEHIPKYSGYKRDVQTTVSNEFATAAFRYGHSQINTLLFRLD-EHGNQTKYGHGLLREMYFKPNRLELEGGLDPLLRGSLAFPAQ--EIDLLMVDEIRNTLFRQGAASPDKETGFDLAAFNIQRGRDHGLSDFNTVRKSIGL---KPYTSFDQITSDKEVAMKLEFLYKDINNIDLWVGGLAEEHVFNSELGETFHAIIVEQFTRIRDGDRFWY--KHIMTKEEIDEVEKTTLSKVIRYNTGFDNCPENVFFASQNCIGVKDFQCIPR 4134
AE R I + NN+ L GA+ + L P Y D +S P + G P R +SN ++ ++ + S R + M +GQF HD D S P R F Q PI IP D ++ +PF R+ S + + R Q N +TS +DAS VYGS+ + LR + R + +LP + D + N R ++AGD R+ P LAA+HTLF+REHNRLA E NP ++ Y AR+ + A +Q I YR++LP +LG + Y GY +V V+N F T AFR+GH+ + +FRLD ++ H L +F R+ EGG+DP+LRG +A PA+ D ++VDE+R+ LFRQ + G DLAA N+QR RDHGL +N R+ GL + ++ ++++A K LY +NID+W+G +AE + + +G + QF R RDGDRFW+ + + TK + + + +LS++I NTG ++F A+ G + IPR
Sbjct: 138 AERCSDKYRTITGRCNNKRRPLLGASNQALARWLPAEYEDGLSLPFGWTPSRRR-------------NGFLLPLVRAVSNQIVRFPNERLTSDRGRALMFMQWGQFIDHDLDFSPESPARVAFTAGVDCERTCAQLPPCFPIKIPPNDPRI---KNQRDCIPFFRSAPSCPQNKNRV----RNQINALTSFVDASMVYGSEVSLSLRLRNRTNYLGLLAINQRFQDNGRALLPFDNLHDDPCLLTNRSAR--IPCFLAGDTRSTETPKLAAMHTLFMREHNRLATELRRLNPRWNGDKLYNEARKIMGAMVQIITYRDFLPLVLGKARARRTLGHYRGYCSNVDPRVANVF-TLAFRFGHTMLQPFMFRLDSQYRASAPNSHVPLSSAFFASWRIVYEGGIDPILRGLMATPAKLNRQDAMLVDELRDRLFRQV-----RRIGLDLAALNMQRSRDHGLPGYNAWRRFCGLSQPRNLAQLSRVLKNQDLARKFLNLYGTPDNIDIWIGAIAEPLLPGARVGPLLACLFENQFRRARDGDRFWWQKRGVFTKRQRKALSRISLSRIICDNTGITTVSRDIFRANIYPRGFVNCSRIPR 706 The following BLAST results are available for this feature:
BLAST of TCONS_00011473 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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