TCONS_00011483 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011483
Unique NameTCONS_00011483
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1497

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011483 ID=TCONS_00011483|Name=TCONS_00011483|organism=Clytia hemisphaerica|type=transcript|length=1497bp
GAAGAAGGCTGCGGAAGGTGACATGAGGACTTTGACACCTGAGTCTGGTG
CATCCGAAGAAGGTTGAACAACAAATTGACAAGTTTAAAATCCAAGAATT
AAAGAAAAACTAGACAGAAAAACAACCAACAACCATAATGGCTGACAATG
ATGAGGAAGAGCCTAAAAAGAAAGGTAACGCTCTGCCACTGTGGGGTAAC
ACACACTCTATGAACATCAACAATCTCATTGTCACTAATATCTTGGCCAG
TCCCTACTTCAAGAATGAACTGTTcaagttaaaaacttttcatgaAGTGA
TTGATGAGATTTACTACAAGGTTGAACATTTGGAGCCGTGGGAGCGTGGT
AGTAGAAAGACACATGGTCAAGTCGGAATGTGTGGTGGTGTACGAGGTGT
TGGTGCTGGAGGGATCGTATCTAGTGGTTTTTGTCTCCTATACAAACTCT
TTACTCTTAAATTGACGGAGAAACAATTACTACAACTCATCAACCATAGA
GATTCGCCATACATTCGCGGTCTCGGATTCATGTTTATACGGTATTGTCA
ACACCCCAACACGTTTTGGGACTGGTACGAGTCCTATCTTGAAGATGACG
AGGAAGTAGATCCGAAGGCAGGCGGAGGCTCTCAGATGACAATCGGTCAA
ATGATTCGCAGTTTCCTATTGAAGCCGGACTGGTACGGCACCTTATTCCC
TCGTATACCGGTCCCCATTCATAAAGATATCAATGCACGCCTTCAAGAGA
TGAACTTGGATGACGAAAGGAAAGTGTATGCAAATGAAGGGGCGGATGAA
GAGGGAGCTGAAGGGGGctatgaaaatgaagatggcGCCAAAGATGATGC
TGAACATTCCCGACAAGACGAAGGATCGTCAAGTAAATCACGTGACCGAA
GCCGCGATCGTCGATCTTCTAGTCGCCGAAGAAGTCGTTCTCGTGAACGT
GAACGCAAGAGAAGTCGATCGCGTGATCGAAAAAGAAGTCACAGTCGCGA
TCGTAAGAGAAGTCGGAGTCGGGAACGTAGTCATGGACGTCATCGGGATC
GTGACAGGGGCCATAGCGATCGTGATTCACGCAAGAGAGATGGTGATAAA
GATAGACATTCTCATAAGAAACATTCACGTGACCGATCGCGAGATCGTGG
TGGTCGTCGTGATGAGAAACGAAGGAGTCGGAGTCGTGAAAGAAGCCGAC
GCTAACAAATTTTAAGGAAAATGTGCATTGGGAATTCTGAACATTACTGT
TGAATTGATCGAGAACCTCGCGAGAATAATCCACCTATAATTAGATATAC
TTGAAAAGTGATATAGGCATAActtgcttttttttttgctatcaAATACT
GATACAGTAGTACATTTGTTTCTATAGTGAAGTTTTATTGAGAAAATTAA
TCTCTTGCGAAGACTTTCACTTTGTAAATATTTTAGCTAATAAAATTTTT
AACCTTCTTAATCATTTACCGACTCTAAATTCGTAAATACTCCTGAA
Run BLAST on NCBI

transcript from alignment at sc0000128:224525..235678-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011483 ID=TCONS_00011483|Name=TCONS_00011483|organism=Clytia hemisphaerica|type=transcript|length=11154bp|location=Sequence derived from alignment at sc0000128:224525..235678- (Clytia hemisphaerica)
GAAGAAGGCTGCGGAAGGTGACATGAGGACTTTGACACCTGAGTCTGGTA
TGTGTGCTTGATTCAGTTGATATTTCTACTCAGGTAATTTTTTTTTAGAT
ATTCTTTGGTCAAATAATGTTGCATTACTTTCTTGAAGGAGATAAAGCAT
GGAATATTCTAGCCTGGATCTATCCATATTTTAAAGTCGCAAAATTGTCG
AATTGTTATCCTATTCCAGTCTGGCACATCCTCCTTGCATACACCTTTTC
CATTATTCAAACTTCTCAGAAATGGCCTGGGGAAATGTGCGCTCCATCGT
TTGCACAAATTGTTTGGGAGGTAAATGAACATGTTTTATCCTGTGGCGAC
GAGGGGTTAGGGAAAGTGGATTTTCAGCTTCTAACTTTTGATGGCGATCT
TTTTTTGCCAAAAAAATTTTCAGGGTGGTATAATATCATGAATAGATTGA
ACATACTTTGAGGGCATTTTGATCTACAGAACTTAAGAAAAGCTCAAAAA
ACTAACTTTCCCTAAGGCGGTCATCGAAAAAAAATGCTCTGTTCGCGTCG
CAACGGGTGTTAAAAATGCATGCGGGCAGACGGGCGGTCGAAAAAATTCC
CGGGTTTTTTAAAATCACGCCAGTAATTTGAGGACGGGTGGTTACGCGAA
CAAAACAATTTTTCGATGGCTGACAGAGCGATAGAGAAAAAAGCTATATA
TACTTAAAAAAACAAATTGCTTTTCCCGGATTTTTTTCCGCGTCTCCGCA
CCGGAAAATCAGCAAAAAATATGATGCGGTCGGGTGACGCAAATAGAACT
ATTTTTCGATGGCCGCCTAAGGCAGTCAGGAACAATGTCTTAGTTAGGAC
AATGGCCTAACTAGGACAATGGCCTAAGAAGAACGTTTTTTTATCCCTAA
TTAGGCCATAGATGGCCTAAGTAGGACATTTTTAATTTGAACCCCCATTT
TAAACATTTTAGGGGAAAATGCACATGTTAAAAAACATAACCAATCGAAA
GAGCGACCTTTAGTTGGTATATGTTGAAAATTTCTTCAAAATCTGCGGAA
AGGTTTTTTCTCTATGTGTCTTTGAATGTACAATTTGTAAAACAGCAGAA
CAGGAACGGAACGAGAAAGTTACTTTACCATTGCCACTTGGTCTACCATT
ATAAAAATTCTTGATTTTACAAATAAAGGACTGTCTACATCATAAAATTT
CGGGTTTTTGTAACATGTAGACTAGGCTTTAGGGCTAGGATAAGATATTT
CTTGATTCGTTTCACCAAAATATTTGAAAATCACCTAGAACCTTTATTTT
TTGGTGCTCTTTCGATTGGCAATGGTAAGAAAGTGCGCATTTTTCTTGAT
TTTGAGTTATAGGCAAAAATAGAAAAAATGGCCTAGTAAGGACGTCAAAG
AAATATTGTAATCCATGGTGTAGACGAGCAGGAGGACGAAGGAACCAGTG
ATGGAGACAAAAAATTCTTAGACGCACTTGTCAAAACAATCAAGATTCCA
ACACCAAGTATTAAGAGTGTTTCAAGGATTGGAAGAAAGGCCGAAGATAA
GAAAAGACCAATAAAAGTTGTCCTTGGATCGGAAAAAGAAAAAATGACTT
TCCTTCGTAATTTGGCTCCTTTAAAAGATAACCAAGAATACAAAGGAGTC
AGTGTGACTGAAGATCTTACACAAACAGAGAGGCTACTGCTCAAAGAATG
GGCAGATAAAGCAAAAGAACTCAACTTGGATGATCCTGAGTGGGTTAGGC
GCGCTAGAGGGGATTCAAAAAACGGGTATTACCTCAAGAAGTTCCCACGA
AATCAAAACCACTAAATCCCGTAATCACAAACAAAAAAAACACAAAAAAA
TATTAAAAATACGGAAAAACCTAAAAAGAAGTTACAGAACGTTCGAAAAA
ACCTAGACATCATATACACGAACGCTGATCAGCTCACGAAGAAAAAGAAG
AAAGAACTTGTTGAGATTACCAAATCAAAACCTCACATCATAGCAATATG
CGAAGTAAAACCGAAAAATTGGAAGAGAAAACGTCTCATTGAGGACTTTT
CCATTCAGGGATATTCAGCACCTTTCGAAACGAATGCACTAAATAAAGTT
GGCCGTGGAATCGTCATTCTAACACATGAATCGATAAAAGATCTTGTTGT
CGAATTAAGATTCGAGACTGAATTCCAAGAAGCTTGCATGGTCAAAATTA
AGTTACAAGGTAATGACACTTTGTTATTTGGGTGAATGTATAGAAGTCCT
ACCAACACAGAGACATCTGCCAAAAACAATGCTTCACTCAACCTACTACT
TAGGGAAATTGGCATGAATAATAAGTATACTCATAAATGCATTGTTGGAG
ATTTCAATTACAAAGACATCAACTGGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTG
AGGGACACATTCTTCTTCCAGCACGTTGATGAGCCGACTAGAGCCAGAGG
AACAGATGAACCATCGTTAATCGATTTGATACTCACTAATGAAGAAAACC
AAGTCAATAAAATCAACTACTTAGCTCCTCTTTGCAAAAGTGACCATAGC
GTACTCAGCGGCGTCTTCATCGAAAGTGGATACGATCGATCGGTACAAGT
AGAGAGGAACTGTCTAGAGTTGAGTATGTGATTGCACGGAACGAAGCTAA
CAGAAAGATAACACAAGTAAAAAGGGAACTTGAAAAACGGATATGTGGGC
AAGCAAAGAGGAGTCTAAAAAGATTTTGGAGACATGTTCGTAACTCCATG
AAAACAAAATCTGGGATCTCGCCTCTCCAGCGCAACCCAAAGGATAAATC
TTCTCTTCACTATACGGACGAAGACAAAGCTGATATACTACAGGATCAGT
TCTGTAGTGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTTTAATCTCACTTTGGA
AATGGTCAAAAAAGAACTTAAAGGTCTCAACCCAAATAAGTCAATTGGTC
CGGACGAAATTCATCCAATTATGTTGAAGGAGCTAGCAGACTACATAGCT
GTCCCGCTCCACACAATCATGACTGAATCATTTGATGAAAGTACTCTGCC
AGACGGATGGAAGGTTGCACATGTGTCACCAATATATAAAAAAGGGAGCA
AAAATCTAGCTAAAAATACAGACCAGTCAGTCTTACATCCATCGCTTGCA
GACTGATGGAAAGAGCGTTAAGGGACCAAATTATGAAACATCTGGTAGAT
AAAAAACTATTAGCTAGTAAAGAATATGGATTCATCTCAAAGAGATCAAC
GATAACACAATTACTTACATACCTTGATAAATGTGCGGATTCGATATCAA
ATAATAAAGTAGTTGATGTGATTTATTTTGACTTTGACACCGTACCACAC
CGCAGACTGCTGAAAAAGCTGAATGCTTATGGAGTCAGAGGATCGGAGCT
CAACTGGATACAGTCCTTTCTCATTGACCGTTATNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTCCACTACTTTTTG
TTTTGTACATCAATGATTTACCAGAGGCTACGAAAGCAGAAATGTTCCTG
TTTGCTGACGATACAAAACTGGTGGAAGAAATAAACAACGTCAAAGATGC
GCTCAGGCTACAGGAAGACATTGATGCCATGGAAAAATTGTCAAAGGACT
GGCTTTTAGAATTTCATCCGAACAAGTGTCATGTTTTAACACTGGGTAAA
TTTTGGAACATCAAATATGCCCATCCCTATACCATAGCAGGATCTGTTCT
AGAACATGTTGACCACGAAAAAGATCTAGGAGTGATAATCGATAGTGACC
TGACCTTTGAAGCCCATATATTCAGTAAAATCAAGAAAGCTAACTTTATC
GTTGGCTTGATTAGCAGGAGCTTCGCCAGATATGTTTCAAACGTTTTTCA
TTGCATTTGTCAGACCCCATTTGGAATATGTACACGTAGTATGGTCTCCA
AGGCTAATCAAACATATCAATGCAATCGAGGGCGTCCAACGAAGAGCTAC
AAGGCTAGTTAGTTGCTATAGAAACTACTCATACGAAGATCGGCTACGAC
TCATCAATCTACCTAGCCTAAAGACCAGGTGCAAATTGGTGATATGGTGG
AAGTTTTCAAGAACCTCCAGATTTATGACGAGTCTATAAGATCAGAGAAA
TTTACTCCTCGGACACGACCACGACGTCAGCATGATTACGAGCTTCAAAG
GAACATTGCTAATGATGGTATGAGAGGCTACCAAAGCAACTCTCTTTTTT
ACAGAAGTGTGAAACCTTGGAATGATCTAGAAGAAGATATTGTTGAAGCA
CCATCCTTACAAGTCTTCAAAGAGCGTTTGATAAAAGAATGGGAGAAAAA
ACTTTATAAAATGTAAAATCAAAAGTTCTGTTTCATAGAGGTCAATAGAC
CTGCGAAATATATTGCTATAAAATAAAATAAGGACATTTTTTATTTCCTA
GTTAGTACATAATGTCCAAACTAAGACATGATGTCCTAAGTAAGACATTG
TTCCTGACTGTAAAGGCAGTCTGAGAAATCTTGTACTGTATCCTGTAAGC
ACGCAATTACACAGTTAAAATTTACGCCCGTTTGGGATTGCATGATTGAG
ATTGCTTGAGCAGATTAGAGGGTTCCGATTTTTCAAAATCAGCGCAGACA
TGGTCAAGCCGACAAAATTTTATAACAGGATCATTTTCTACGATAAATTT
TGAGTAAGATATAGTCCAAGGCTTTCTAATTTTTACGAAGCAATCGGAAG
CAAATAAAGTTTTTTTAAATGATAGACTAGTTTTAAGGAAGCAATTGCAT
GCTTATCACCCATTCAAATAGTGATAAGCTATTTTGATAGCCATGTAATT
GCACGTCTAAATCTCAGAAGTTAAGCGCGCAATCAAGAGGGTTTCCCAAA
CTGTAAGGAAACACAGGCAAAAACAGGTTTGTTTACCTCCAGAAAACAAA
CGGTGGAGACCATCAAAATAATGTGCACACATAATAATAATGTGCGCACA
TTAGTTTTGCGAACTACAGGAAAGGTGTATTGCATAGGGTGTTCATTTGC
AAAAGTTTTTCCATATTCAGTGCAAATGCAATAGTCTTGGGCAAAACATG
CTAATTCGACCTTTAAATTGAAAATTGCAAAAGACAAATTGAAACGGNAA
CATGCTAATTCGACCTTTAAATTGAAAATGGCAAAAGACAAATTGAAACG
ACAACTTCTTTTCTTCTAGAATAATCTTCAAATATGTAAGTAAAAAATCA
CCCATTGGAAAAAAATTTCATCTATCCATTTTTCTGGAAATATAATGCAA
TTACACTGGGTATATATTAGTAACTTTTATCTTCTACCCATTGTATTTGC
AACTGGTCGCAGCCCCAAATAACACAACCCAGGGCATGGCCTGAAATGTT
CTGGCCTCGCGAACACACAGGTTCGCGCAATTTCAGGCCATGTTTGGGCC
AGATTTAAGTCAGTCATAAAAACAGAGAAACACTACATTTGAAAAACAGA
GGGTCCGTTTTTGTGAAATGCAAGGACCGCAATGACGGACCGTCTACATA
AACACATCCATTTCTGGACTTTTTTTTGCAGACCGACCAACTGACTCATT
TTTTTACCTAAAAATGACGGGAGCACAAGTTTTCTCTGGAAAACTCAACC
AATTGATCTGATCATTTCTGACAAATCAAATTCAAAGAGTCTCAGTAAAT
TCAACCTTGTCTGCTAAAACAGAAGTTATATCAGGTGCTCCACAAGGCTC
AGTGCTCAGCCCACTTCTATTTCTCATCATAATCCAAGACAACAAAGTCA
ACAGACGACACTCGCTTGATAAAGGAGCAACCTAGCTGATAAAGAGTATC
TCCAAAACAATATGCTGTTTAGGAATAGACAGAAAGGAACAATATGAAAT
TTGAACATCTTGCATATGGTAAAAATGACACCCTGAAACAAAACTCATCC
TACTTCTCTAACACAGCAACACTTATTGAAACCAAAGTACAAGTGTGTCA
CACTGGATAATGACATATGACCAACACATTACAAGATCAAATTCAAAAAG
TAAAGAACATAAGTGCATGGATCTATTGAACTTTTAAATTGAGGAAGGTA
GGAGTGATGCTTACCTTATGAAAATCTTTGGTAATTCCACACCCAGATTA
TCGCTCTCAACTTTGGTTGCCGTGGAAATGAAGTCTAACTCAGAATTGGA
AGAAGTTCAAAAATCGTTTCTACATGGCATCCCATCACTACGCCACTTAA
ACTACTGGCAAAAGCTGAAAACACTAAGGTTATACAGTCTCAAAAGATGA
AGATAACAATGCCAGATCATTTACACTTGGAACGTCATTGAAGGCAATGT
ACCAAACAGGAATTTTGATGATTAAATGGGAGGCATATTTTGTCGCTCAA
GCAGAGATTGAGCAGAACTTGTAATCTCAAACCTTTCAATACCATACATA
AAAACATCTGGAAGGGATGTCTTTCACCAGAGGGTCAATTGCTCAAAAGA
CCACTTCAAAAAATATTAAAACATCTTTCGAGCAACTGTACCAGACGAGC
CACTGCTTGCCAACTATTTCCAGGCAAGCTGACTCAAATACAATGTTGAA
AAAATGCCCAAGCATTTACAAGTTGGATATGCTGTTCATGTAAAATCAGA
AAAGAGGTACAAATAGGTAGGTTATTTGTGATGTCAGCCTCAACAAAAAA
GATGTACATAGAAAAAGTTAGGAAAAGCTGGTTGTTTAAAATTGTAAAAT
ACCTACTTGAATGAGAGAATGCTATCCTAGGTATCAAAACAATTGGTAAA
AATAAATTTTGTTTAATAAATTATGTAAATAGGCGTTTTCTATGGATGGT
ACTTTTGACATAGCAGACTCAGCAAGGTTGACAAAGTCATTCCAAAGATC
ATTTAACGGAGTTGTCTTATTACAGGCCATTTTTCATGCCCTTTTAGCGT
CTGGTTATCGGACGCTGCCCCTCCTGAAATTACTAAAATATTGGTAAAAA
CAGCCTTTTTTGTGGAAAAACACTGAAAAAAGTGCCCTTTTTGACCACCA
ACGGACGCTGCTTTGCCTTTCTAAAATATGGCCTGTATTATGTAGCTGAC
AAAGATTTGTAACATCAGATTTTTTATATCAGGGATATTGGCATGATTCC
ATAGGTGGGCAGTTTTTTTTACTGGGCGGCTATGTGGGTGAAATGCGATA
ACTATTCAATCATGGTCACTAGGTCCAGCAGTGTCTTCCATTAATGAAAT
GAAGGATGGGTTGTTTTTTTAAATCAATTCAAGGATATTTTTCTTTCTGG
TTGGAAAGGCAACTAAAATTGAGAAAATACACAATGAAATAGCACACTAT
TCTAAAACACTATAGCGTCACTGTGAATTTTTTTTCCTTTTACGATTCAG
GTGCATCCGAAGAAGGTTGAACAACAAATTGACAAGTTTAAAATCCAAGA
ATTAAAGAAAAACTAGACAGAAAAACAACCAACAACCATAATGGCTGACA
ATGATGAGGAAGAGCCTAAAAAGAAAGGTAACGCTCTGCCACTGTGGGGT
AACACACACTCTATGAACATCAACAATCTCATTGTCACTAATATCTTGGC
CAGTCCCTACTTCAAGAATGAACTGTTCAAGTTAAAAACTTTTCATGAAG
TGATTGATGAGATTTACTACAAGGTCAGTTTGTTATTTTTTTCTTCTTCC
AATAAATGCATTACTGCATCTTCTCATCTCTTATTGGAAAGCAGGTACTG
GAAAATGCAATTTATTAACAGGATGTTTCTTTTTATTATGCAAATAAATA
AAGTGGTTAATACTTAATGTCCTCGTACTTAACGCTCTTACTAAATCTTT
CAATGATTTATGACAAATTATTTTCCCATTCTTTTGGAAATGAACCTTGG
AGCATATTCATGAAATAACTTTATAGCTTTTGAACAAATTCTAGTCCTGA
ATAAAAAAGGATTGATCTTTTCTTCTCTCACTGAAATGATGTCTAATCCG
TTGTTCTGTTCCTTTATTTCTCGTGCAGGTTGAACATTTGGAGCCGTGGG
AGCGTGGTAGTAGAAAGACACATGGTCAAGTCGGAATGTGTGGTGGTGTA
CGAGGTGTTGGTGCTGGAGGGATCGTATCTAGTGGTTTTTGTCTCCTATA
CAAACTCTTTACTCTTAAATTGACGGAGAAACAATTACTACAACTCATCA
ACCATAGAGATTCGCCATACATTCGCGGTCTCGGATTCATGTTTATACGG
TATTGTCAACACCCCAACACGTTTTGGGACTGGTACGAGTCCTATCTTGA
AGATGACGAGGAAGTAGATCCGAAGGCAGGTACGCCATTTTTTTTCTCCA
TGTGTTTCTGTAGGAAAGAGCTAAGCTTTTGTTTTTTTAGAAATACATGC
TGATAAATTATAAGGGGACGGTAGACAGTGAATCAAGTTTTAATATTGAA
TAGATCATGCTCTGTCTTTTTAAACGCCTTAGTTTTCTGTATAAATCTCT
GGCAGGGTTTGAATTTATCAGTGCTATATTAACTATTGTTTGTTACAATC
GCTGGCTTTATGCTGACTATTCAATTTTTTTATTCATTTGTTATTTTCTC
TTCCAAGTAACCAGTTTGATTTTGGAAATGTCGTAAAACCGCGAAAAAGA
AAGCAGAACATGTTGTTAAAACACAGTTCCAAGATTTTCCAAACTTGCTT
AAAAATCGTATTTTACAAGATTCCTCACACAGGGATTAAATCATTCTTCA
AGTTTTCTTAAATACTGCTCACAGTGGATTTCAAAGTTTTACTCACGTAA
AACCTTATTTCTCGCAAAAAGCAACATGAGTTAGTTATGTTTTACCAGGA
CTACATGCAGTGCAGATTTCATTTATTTTCATTTATTTAGGCCTTTTAAA
ATCTTCCCTGTGACGATTCTCAAAAAGAAAAGCCATTTAAGTAACATTAA
CGAACCAAATAAAAAATCTTTTAATCATTTATTTTAACCTAAAAGTCTGC
CAGGTCACTTTTTTCATGATGAGGTTGTTTTGCTGTTGGCGTTACTCAAG
GGTAACTAAAACTCAATTTCGCAAAGGTTAGAATGCATTAAGCACAGTCA
ATATCAGTGTTAAAAAGTCGCTCCGTTTCAGACGGTTTTCCGTCTCAGCA
AAGTGTATAAAGAGAGGCTTTTCTGTCTCAAAACTCTATAATTCACCAAA
GTTCCAAGACTATTTTGCTTATTGGCTGTGTAAAATCTATTTCCGTCTCC
GACGAAAAACCTTGTTTTGACCATGCAACAGATTTCCATTTTTTGCTTTC
CCCAGTAAGTCTGGGTACAGTTGCTCAAAATTCACGGGAATAGTTTTTCG
AACAGTCTTTTGAAACCTATGGTGAATATTTCCGATATATACAGAAACTT
TTTCCTCATTACCTTGCACGAAGAAAACCCTCTTTTTTTGAAACAGTTTT
GAAGTACAAAAGAATGAAGAAAGAAGTAAAACGAGATTTGAGGTACCTCT
TCTGATGTTCATTTTCTTTCGCCAATAACTTATTTTGTTGTTAGAATAAT
GGACTTCAATATAATCCACGATAACCTATTATCTTCTCATCATGATGATT
TTAATTATCTTTTCTAGGCGGAGGCTCTCAGATGACAATCGGTCAAATGA
TTCGCAGTTTCCTATTGAAGCCGGACTGGTACGGCACCTTATTCCCTCGT
ATACCGGTCCCCATTCATAAAGATATCAATGCACGCCTTCAAGAGATGAA
CTTGGATGACGAAAGGAAAGTGTATGCAAATGAAGGGGCGGATGAAGAGG
GAGCTGAAGGGGGCTATGAAAATGAAGATGGCGCCAAAGGTTTGTCTTCT
GTTATATTTCTTTACTTTACCTTTTTGGTCATCAACAATTGTGTGTTGTT
CATCTCTATCAATTGTTTGCTTTCGTCCACATTCATCCTTATATGATACT
CTTCAATGGGCAAACACTTTTTCACGCAAGTATTAAGCATAATTTTTTGA
ATTTTTAAGTATGTCTGCTTGAATTCATTTCCCTTCTTTCTTTATGATAG
ATGATGCTGAACATTCCCGACAAGACGAAGGATCGTCAAGTAAATCACGT
GACCGAAGCCGCGATCGTCGATCTTCTAGTCGCCGAAGAAGTCGTTCTCG
TGAACGTGAACGCAAGAGAAGTCGATCGCGTGATCGAAAAAGAAGTCACA
GTCGCGATCGTAAGAGAAGTCGGAGTCGGGAACGTAGTCATGGACGTCAT
CGGGATCGTGACAGGGGCCATAGCGATCGTGATTCACGCAAGAGAGATGG
TGATAAAGATAGACATTCTCATAAGAAACATTCACGTGACCGATCGCGAG
ATCGTGGTGGTCGTCGTGATGAGAAACGAAGGAGTCGGAGTCGTGAAAGA
AGCCGACGCTAACAAATTTTAAGGAAAATGTGCATTGGGAATTCTGAACA
TTACTGTTGAATTGATCGAGAACCTCGCGAGAATAATCCACCTATAATTA
GATATACTTGAAAAGTGATATAGGCATAACTTGCTTTTTTTTTTGCTATC
AAATACTGATACAGTAGTACATTTGTTTCTATAGTGAAGTTTTATTGAGA
AAATTAATCTCTTGCGAAGACTTTCACTTTGTAAATATTTTAGCTAATAA
AATTTTTAACCTTCTTAATCATTTACCGACTCTAAATTCGTAAATACTCC
TGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006433XLOC_006433Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011483-exon-sc0000128-1575043694:235632..235678TCONS_00011483-exon-sc0000128-1575043694:235632..235678Clytia hemisphaericaexon
TCONS_00011483-exon-sc0000128-1575043694:227556..227828TCONS_00011483-exon-sc0000128-1575043694:227556..227828Clytia hemisphaericaexon
TCONS_00011483-exon-sc0000128-1575043694:226900..227200TCONS_00011483-exon-sc0000128-1575043694:226900..227200Clytia hemisphaericaexon
TCONS_00011483-exon-sc0000128-1575043694:225390..225611TCONS_00011483-exon-sc0000128-1575043694:225390..225611Clytia hemisphaericaexon
TCONS_00011483-exon-sc0000128-1575043694:224525..225178TCONS_00011483-exon-sc0000128-1575043694:224525..225178Clytia hemisphaericaexon
TCONS_00011483-exon-sc0000128-1510915933:235632..235678TCONS_00011483-exon-sc0000128-1510915933:235632..235678Clytia hemisphaericaexon
TCONS_00011483-exon-sc0000128-1510915933:227556..227828TCONS_00011483-exon-sc0000128-1510915933:227556..227828Clytia hemisphaericaexon
TCONS_00011483-exon-sc0000128-1510915933:226900..227200TCONS_00011483-exon-sc0000128-1510915933:226900..227200Clytia hemisphaericaexon
TCONS_00011483-exon-sc0000128-1510915933:225390..225611TCONS_00011483-exon-sc0000128-1510915933:225390..225611Clytia hemisphaericaexon
TCONS_00011483-exon-sc0000128-1510915933:224525..225178TCONS_00011483-exon-sc0000128-1510915933:224525..225178Clytia hemisphaericaexon
TCONS_00011483-exon-sc0000128-1491911889:235632..235678TCONS_00011483-exon-sc0000128-1491911889:235632..235678Clytia hemisphaericaexon
TCONS_00011483-exon-sc0000128-1491911889:227556..227828TCONS_00011483-exon-sc0000128-1491911889:227556..227828Clytia hemisphaericaexon
TCONS_00011483-exon-sc0000128-1491911889:226900..227200TCONS_00011483-exon-sc0000128-1491911889:226900..227200Clytia hemisphaericaexon
TCONS_00011483-exon-sc0000128-1491911889:225390..225611TCONS_00011483-exon-sc0000128-1491911889:225390..225611Clytia hemisphaericaexon
TCONS_00011483-exon-sc0000128-1491911889:224525..225178TCONS_00011483-exon-sc0000128-1491911889:224525..225178Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000128supercontigsc0000128:224525..235678 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.04527e-09	0	7.25306e-08	0	0.00422379	0	0	0.000411909	4.29605e-07	4.43813e-09	0	0	0	0	0	0	0	0	0	0	5.52722e-05	7.71178e-09	0	1.15066e-09	0	0
Blast
[Close]
BLAST of TCONS_00011483 vs. Swiss-Prot (Human)
Match: PR38B (Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PRPF38B PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.206e-68
Identity = 131/193 (67.88%), Postives = 165/193 (85.49%), Query Frame = 3 
Query:  168 KKGNALPLWGNTHSMNINNLIVTNILASPYFKNELFKLKTFHEVIDEIYYKVEHLEPWERGSRKTHXXXXXXXXXXXXXXXXXXXXXFCLLYXXXXXXXXXXXXXXXINHRDSPYIRGLGFMFIRYCQHPNTFWDWYESYLEDDEEVDPKAGGGSQMTIGQMIRSFLLKPDWYGTLFPRIPVPIHKDINARLQ 746
            K+GN LPLWGN  +MN+N +I+TNIL+SPYFK +L++LKT+HEV+DEIY+KV H+EPWE+GSRKT GQ GMCGGVRGVG GGIVS+ FCLLYKLFTLKLT KQ++ LI H DSPYIR LGFM+IRY Q P   WDW+ES+L+D+E++D KAGGG  MTIG+M+RSFL K +W+ TLFPRIPVP+ K+I+ +++
Sbjct:   42 KQGNVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIK 234
The following BLAST results are available for this feature:
BLAST of TCONS_00011483 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PR38B4.206e-6867.88Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PR... [more]
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