TCONS_00011495 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011495
Unique NameTCONS_00011495
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3127

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011495 ID=TCONS_00011495|Name=TCONS_00011495|organism=Clytia hemisphaerica|type=transcript|length=3127bp
cGTGGGAAACATATGCCCTcagtaaaaatctaaattccaaattacaaata
tgcgcagagaagtattacaattctgcgcagctcaagtattacaaatttgc
gcaaagtttattacaaatctgcgcaggtattacaaatctgcgcacaacat
aTACTAAtgttctttttgttaaattaagCTTAAAGTAtaatatttgattt
taaatcatAGTAAAATCTTTTAGTAATAAAATAATTAGAAAATACATGag
ctttaaaaatgaaatatttttctcaacaTTACAATACAAAAATCGATATG
TTCATCCACGTCAAGCAAATCCCAATCAAGCTCAACACATATTTGTTCAT
GATCGTCAATTTCATCACCTAACTCATCAATCATGCGATAAACAACCAGC
GCTTTATAAAACCGACAAGTTTTTTGCCAATGGTCAGCCAGGATAAATGC
CTCCCGAAAAATATTACTCGTGTATCTCTTTTCTTCAATCTCTGCGTACG
AAAAATTCATTGCAACTTGTTCAGCCATTGAAACTTCATCATGTTTTACA
TGCAGACAGTAGAGGAGTATCAGACCGcggattttgaagcaaatagtCGG
GTCATGTGCACGCATCCTTATTATCACAGAATAGAGAGAATCCACCGGTA
GATTATTGGGTAACATCAGTATTTTGCAGAACGCGTCAACAGCAATCGCG
GTACAAGGAATTGGTGAGCTTGCGAGCCACCTTTTGAAGTATTTGTTACT
TTCATCAAACAAACCAACATCGAAACATGCTCGCCCAGCATCGCATATTG
ATTCATTACTCAAAGGCTCTGATTCTTCTATCACTTTCATCCCTTTTTGA
ATTTCTCCATTTAAGATCATACAACAGCCGATTTGGACTTTAGCACTCGA
TTCTTCATGTTTATAATCTGATATCGTGTAAAGTAAATCCAAAGCTTTAT
CAAACTCTTGTGTTTCTTTATAACAGATGCTTCGAAAAAAGTTCATCTCT
AAATTAGGAGCAGCAAATAGTATTTGTAAGAAGCTGGGCACCTGTTCAAA
ATGGCCATTTAgaaaacaaacaacaaatttTCTTAATATATTTTCACTGT
TGTCAGTGTTTAGCACTGCTTTCGCATTTGTTATGCATTCTAACAAATTC
CTTTTCACTGGGCTTTCTTCAAGATTTTCATTCACTCGTTGCTCAAAGTT
TTCCCAATATGCCAGTTCTTGACCAGCATAACAATAATCCAGGTAGTAAG
ATACTGGGTTTTTAAAGTCGTTTTTTGTTGAGTCATAAATTCGCCTTGCG
ATGTCTTTGAGAAAACATTCCGAAGGCGAAAATATTAGAACCGCTGGATA
GTTTGATAATTGACTGACAATGATATCTTTGTAACAATCTTGCTCCCAAA
GGTGCTGGAGGTGGTTTAGCCATAATTTGTATTCTGAGGTTCTATCAACA
GACACCCACTTCTCGGATGAAAACATCTCAATAAACTGCTCTAGTGTTTT
TTGTAATGCTCTGTTTTTAGTGATGTAGATCTTAACTGCCTCCTGATAGA
GGGAATGGACGGTTAGATAGTTGACTTTTTTGTTGGTGAATTCAGTCATT
TGTTGCTTAGCTTGGATGATTGAATAATTAAACAAGATACGTTTGGCTTT
ATTGTATTCCGTTTTTGTCTCATAACACCTTTTAAGAAACTCCTCCAACA
TAAAAGTTCCATCGAGAATTGCAAACAAAGACAAAAGTTTCATCACCTCC
GGACTCTCTCGTTCAATCCTTTCAATTGTTATGAAGAACGAAACAAAGAC
TGACGTTCTAATTCCATAACCAAGTGCTACTTTTTCAGACAACATATCAA
CCTTATGTTTTCTTAGCTCATCGAGGTATTCATTAATCGGTAATTGAGTT
TGGGTTATCGAGGCTACTGCATGCTGAAGTCCTAATGGATGGAACTCCAA
CTCTTTCGATAATTCAGACAATTCTTTTGGATCAGCTGTTTTCAATTGGC
TCTTAAGAAACTTGGTGGCGCTTTGTTCTGACCATTTATCAATAGTCACT
ATTTCATACCCAGCTCCCCAATGTTGTATTTGAGTGGTGATCAAGTTATG
GTGACCTGGATCGAGATATTTGGTCAACTGCTCAACCGCGGTACAATTAT
CGTAGATATAAAGGACCATTTCGTTTTGGAAGTATGTTTTCAGTAAAGCT
GTAATGACTTGGATATTCGTCTTCTCGTCCAATTTTAAAATAGTggcaac
atttttgaaatcattttcgaTGTTATCTACATTGATTTTGATCACGTGGT
CGTAATCAGTTTGATGGGTGACGTAATAATGGTTTGCAGTTTCGCTTTTC
CCAACACCTGGAATCCCTGTGATAACGACATTGCAGGCTTTCTTGAGTTT
AAAAATATCATTGATCTCCTTTAATTCGTCGTCTCGTCCGGTGAAATTCA
CGTTCGGTTGAGGTGGATTATATTCAAAAGAGGGTAGTAAGTCGTTCAGG
TCGTTCTGCGAGCATCCAAGAGCTAATAGAGGCTTTTTTACATACTGAAA
CGATCTTCGATACTCTACTGTTGAGATTGATAGCTGACCATGCTGCATTC
GATTTCTTTCGAGTTTCAAACGAAGAGCATTTGCAATGTCATCAACATCG
TTGACATCTGGTTCTTCATACCAACCATTGGAGGGTGTCTTGTGACCACA
TAATGTTCgtatcaaaagaaaaagcaaagtgATATCAAATTGTGTTGAAT
CTGTTTGTTGTGATGCTGTATAAACAAGATCATATTGATCGtcattcaat
tttaatttatccAACTTTCTCTTGTGTTTTGTCTGTGACAATTCTTGATA
CAACATCACAGGATTTGTTGGAAACTTTTTGTGAAATAAATCAAGTAAGC
ATTTGGTAGATTTCTCACGTAAGAGTTGTTGTTTGAATCCATTTTTCTGC
TGTTGCGTAGGGTAGTTTTTCTGCTGATGAAAAATATTCATTGTTGCTGC
CACGTATGTACTCTCTCTATCAAACATACAACACCCTCAGACTCTGTTTT
TAATAGATTACAAAAATCACGAGATTCAAATCACGAGACTCAACTTTCTC
AACTGAACAATCAAGACAACAAAAAAC
Run BLAST on NCBI

transcript from alignment at sc0000128:386258..389450-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011495 ID=TCONS_00011495|Name=TCONS_00011495|organism=Clytia hemisphaerica|type=transcript|length=3193bp|location=Sequence derived from alignment at sc0000128:386258..389450- (Clytia hemisphaerica)
CGTGGGAAACATATGCCCTCAGTAAAAATCTAAATTCCAAATTACAAATA
TGCGCAGAGAAGTATTACAATTCTGCGCAGCTCAAGTATTACAAATTTGC
GCAAAGTTTATTACAAATCTGCGCAGGTATTACAAATCTGCGCACAACAT
ATACTAATGTTCTTTTTGTTAAATTAAGCTTAAAGTATAATATTTGATTT
TAAATCATAGTAAAATCTTTTAGTAATAAAATAATTAGAAAATACATGAG
CTTTAAAAATGAAATATTTTTCTCAACATTACAATACAAAAATCGATATG
TTCATCCACGTCAAGCAAATCCCAATCAAGCTCAACACATATTTGTTCAT
GATCGTCAATTTCATCACCTAACTCATCAATCATGCGATAAACAACCAGC
GCTTTATAAAACCGACAAGTTTTTTGCCAATGGTCAGCCAGGATAAATGC
CTCCCGAAAAATATTACTCGTGTATCTCTTTTCTTCAATCTCTGCGTACG
AAAAATTCATTGCAACTTGTTCAGCCATTGAAACTTCATCATGTTTTACA
TGCAGACAGTAGAGGAGTATCAGACCGCGGATTTTGAAGCAAATAGTCGG
GTCATGTGCACGCATCCTTATTATCACAGAATAGAGAGAATCCACCGGTA
GATTATTGGGTAACATCAGTATTTTGCAGAACGCGTCAACAGCAATCGCG
GTACAAGGAATTGGTGAGCTTGCGAGCCACCTTTTGAAGTATTTGTTACT
TTCATCAAACAAACCAACATCGAAACATGCTCGCCCAGCATCGCATATTG
ATTCATTACANTTACTTTCATCAAACAAACCAACATCGAAACATGCTCGC
CCAGCATCGCATATTGAGTCATTACTCAAAGGCTCTGATTCTTCTATCAC
TTTCATCCCTTTTTGAATTTCTCCATTTAAGATCATACAACAGCCGATTT
GGACTTTAGCACTCGATTCTTCATGTTTATAATCTGATATCGTGTAAAGT
AAATCCAAAGCTTTATCAAACTCTTGTGTTTCTTTATAACAGATGCTTCG
AAAAAAGTTCATCTCTAAATTAGGAGCAGCAAATAGTATTTGTAAGAAGC
TGGGCACCTGTTCAAAATGGCCATTTAGAAAACAAACAACAAATTTTCTT
AATATATTTTCACTGTTGTCAGTGTTTAGCACTGCTTTCGCATTTGTTAT
GCATTCTAACAAATTCCTTTTCACTGGGCTTTCTTCAAGATTTTCATTCA
CTCGTTGCTCAAAGTTTTCCCAATATGCCAGTTCTTGACCAGCATAACAA
TAATCCAGGTAGTAAGATACTGGGTTTTTAAAGTCGTTTTTTGTTGAGTC
ATAAATTCGCCTTGCGATGTCTTTGAGAAAACATTCCGAAGGCGAAAATA
TTAGAACCGCTGGATAGTTTGATAATTGACTGACAATGATATCTTTGTAA
CAATCTTGCTCCCAAAGGTGCTGGAGGTGGTTTAGCCATAATTTGTATTC
TGAGGTTCTATCAACAGACACCCACTTCTCGGATGAAAACATCTCAATAA
ACTGCTCTAGTGTTTTTTGTAATGCTCTGTTTTTAGTGATGTAGATCTTA
ACTGCCTCCTGATAGAGGGAATGGACGGTTAGATAGTTGACTTTTTTGTT
GGTGAATTCAGTCATTTGTTGCTTAGCTTGGATGATTGAATAATTAAACA
AGATACGTTTGGCTTTATTGTATTCCGTTTTTGTCTCATAACACCTTTTA
AGAAACTCCTCCAACATAAAAGTTCCATCGAGAATTGCAAACAAAGACAA
AAGTTTCATCACCTCCGGACTCTCTCGTTCAATCCTTTCAATTGTTATGA
AGAACGAAACAAAGACTGACGTTCTAATTCCATAACCAAGTGCTACTTTT
TCAGACAACATATCAACCTTATGTTTTCTTAGCTCATCGAGGTATTCATT
AATCGGTAATTGAGTTTGGGTTATCGAGGCTACTGCATGCTGAAGTCCTA
ATGGATGGAACTCCAACTCTTTCGATAATTCAGACAATTCTTTTGGATCA
GCTGTTTTCAATTGGCTCTTAAGAAACTTGGTGGCGCTTTGTTCTGACCA
TTTATCAATAGTCACTATTTCATACCCAGCTCCCCAATGTTGTATTTGAG
TGGTGATCAAGTTATGGTGACCTGGATCGAGATATTTGGTCAACTGCTCA
ACCGCGGTACAATTATCGTAGATATAAAGGACCATTTCGTTTTGGAAGTA
TGTTTTCAGTAAAGCTGTAATGACTTGGATATTCGTCTTCTCGTCCAATT
TTAAAATAGTGGCAACATTTTTGAAATCATTTTCGATGTTATCTACATTG
ATTTTGATCACGTGGTCGTAATCAGTTTGATGGGTGACGTAATAATGGTT
TGCAGTTTCGCTTTTCCCAACACCTGGAATCCCTGTGATAACGACATTGC
AGGCTTTCTTGAGTTTAAAAATATCATTGATCTCCTTTAATTCGTCGTCT
CGTCCGGTGAAATTCACGTTCGGTTGAGGTGGATTATATTCAAAAGAGGG
TAGTAAGTCGTTCAGGTCGTTCTGCGAGCATCCAAGAGCTAATAGAGGCT
TTTTTACATACTGAAACGATCTTCGATACTCTACTGTTGAGATTGATAGC
TGACCATGCTGCATTCGATTTCTTTCGAGTTTCAAACGAAGAGCATTTGC
AATGTCATCAACATCGTTGACATCTGGTTCTTCATACCAACCATTGGAGG
GTGTCTTGTGACCACATAATGTTCGTATCAAAAGAAAAAGCAAAGTGATA
TCAAATTGTGTTGAATCTGTTTGTTGTGATGCTGTATAAACAAGATCATA
TTGATCGTCATTCAATTTTAATTTATCCAACTTTCTCTTGTGTTTTGTCT
GTGACAATTCTTGATACAACATCACAGGATTTGTTGGAAACTTTTTGTGA
AATAAATCAAGTAAGCATTTGGTAGATTTCTCACGTAAGAGTTGTTGTTT
GAATCCATTTTTCTGCTGTTGCGTAGGGTAGTTTTTCTGCTGATGAAAAA
TATTCATTGTTGCTGCCACGTATGTACTCTCTCTATCAAACATACAACAC
CCTCAGACTCTGTTTTTAATAGATTACAAAAATCACGAGATTCAAATCAC
GAGACTCAACTTTCTCAACTGAACAATCAAGACAACAAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006438XLOC_006438Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011495-exon-sc0000128-1575043694:388642..389450TCONS_00011495-exon-sc0000128-1575043694:388642..389450Clytia hemisphaericaexon
TCONS_00011495-exon-sc0000128-1575043694:386258..388575TCONS_00011495-exon-sc0000128-1575043694:386258..388575Clytia hemisphaericaexon
TCONS_00011495-exon-sc0000128-1510915933:388642..389450TCONS_00011495-exon-sc0000128-1510915933:388642..389450Clytia hemisphaericaexon
TCONS_00011495-exon-sc0000128-1510915933:386258..388575TCONS_00011495-exon-sc0000128-1510915933:386258..388575Clytia hemisphaericaexon
TCONS_00011495-exon-sc0000128-1491911889:388642..389450TCONS_00011495-exon-sc0000128-1491911889:388642..389450Clytia hemisphaericaexon
TCONS_00011495-exon-sc0000128-1491911889:386258..388575TCONS_00011495-exon-sc0000128-1491911889:386258..388575Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000128supercontigsc0000128:386258..389450 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0675412	0.0948351	0.134414	0.145901	0.447141	0.213754	1.78303	1.92259	1.43539	1.85116	1.90899	1.25253	1.99809	1.47914	8.00559	8.92029	8.74854	8.64986	5.70829	6.12396	3.39862	3.39497	5.75174	6.10672	3.38433	4.27649	3.77072	2.20128	6.21075	4.2715
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011495 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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