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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011512 ID=TCONS_00011512|Name=TCONS_00011512|organism=Clytia hemisphaerica|type=transcript|length=4295bpRun BLAST on NCBI protein sequence of TCONS_00011512-protein >TCONS_00011512-protein ID=TCONS_00011512-protein|Name=TCONS_00011512-protein|organism=Clytia hemisphaerica|type=polypeptide|length=873bp MGDRRFSEQLTGKDAPDLVYKLMLAEVKILQEMESYTEKRAALDYEYGEKRun BLAST on NCBI transcript from alignment at sc0000128:527683..556113- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011512 ID=TCONS_00011512|Name=TCONS_00011512|organism=Clytia hemisphaerica|type=transcript|length=28431bp|location=Sequence derived from alignment at sc0000128:527683..556113- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000128:527683..556113- >TCONS_00011512 ID=TCONS_00011512|Name=TCONS_00011512|organism=Clytia hemisphaerica|type=CDS|length=2622bp|location=Sequence derived from alignment at sc0000128:527683..556113- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011512 vs. Swiss-Prot (Human)
Match: FER (Tyrosine-protein kinase Fer OS=Homo sapiens GN=FER PE=1 SV=2) HSP 1 Score: 432.95 bits (1112), Expect = 1.729e-132 Identity = 288/871 (33.07%), Postives = 452/871 (51.89%), Query Frame = 1
Query: 100 KDAPDLVYKLMLAEVKILQEMESYTEKRAALDYEYGEKLAKLHEKIKIGESDPHTEGSQVEKAWRTYLTESENKAITIMNNAKNLGGSTQQSIKNLRARKKDTADKFQQQKLKIEAEYLR-SNGEADRLQASYQVALKEAGXXXXXXXXXXXXXXSQRDWQKGKERFDDASRKLHMNHNLYFLSIKLLNIHQNHKVYELN-PHILDTAQEIETKYLKVWKDIFLEIVDNSSWSREEFMTSENELRQTIDLVSPATEFKHFIAVNKKSKKPLFPHLFDTKLIEDSNATSGLTDDMLAVNDLTHD--QLINKKM--DLEQDNSIYLDDLVKKKSQLEEENKKLRKMANEDNNNTQYSTILQYSLCQ-QKLIELKETECKFACTKVQFDSIEDALSRESNPKQPYIDXXXXXXXXXXXXXXXXXXAAGVSNERSDPP-----ERKARSSTLPRTLAKNFRRKSLTXXXXXXXXXXXXXXXXXXDTEGDYDDPESSGGGPKTLAQCDYFHGSVDRSTVTRLLKCDGDFIVREKSGSSADYVLSVLWRGQTKHFILKADDGMYKLEGESFPSIPQLVDHHHQKRSIVQATTGVILVNPIRIAFKPGDG-YTYKQTDVRLDQTLGSGHFGEVFKGYLIPLKMPVAIKSCKPKDDVANQKQKFIEEAEIMKPCQHPNLIKLIGVCIDRDPYYILLELCEKGDLLNFLRKESVRLNPQQRIKMANDVANGMSFLERNKIIHRDLAARNCLVKLDMTVKICDFGMSREEEEEGLYTMKETKVIPFKWTAPEVWRYNRYTSKSDVWSFGVTLWEIFSGGKQPYPDKKNHEAKRYVEEGNRLDAPSGTPPSVDELMKLCWLELEQDRPNFQEICRSLKDMRR 2673
K++ + V KL E+++L+ ++ + R D EY L L ++ + S V K+W + ++E + + +A++L + + K+ + +IEAE ++ + E ++L+ SY+ +KE K+K + K ++ +K KER+D A+ KLHM HN Y L++K +HQN + Y++ P +LD+ Q+++ + +K K IF E +S EE + E++ +++ + P+TE+ +FI V++ + FDT L+E++ L + + N+LT + Q++ K + +L Q + L+ EE +L K E + + + + L Q Q L ELK++ + CT+ +F + ++ L ++ N+ +PP E ARS T + RK S + G + K LA+ D++HG++ R LLK GDF+VRE G +YVLSV GQ +HFI++ D MY+ EG F +IPQL+DHH+ + ++ +GV+L+NPI P D + DV L + LG G+FGEV+KG L K VA+K+CK +D K KF++EA+I+K HPN++KLIGVC R P YI++EL GD L FLR++ L +Q +K + D A GM +LE IHRDLAARNCLV + +KI DFGMSR +E+ G+Y+ K IP KWTAPE Y RY+S+SDVWSFG+ LWE FS G PYP N +A+ VE G R+ AP P + ++M CW ++RP F E+ + L ++R
Sbjct: 8 KNSHEAVLKLQDWELRLLETVKKFMALRIKSDKEYASTLQNLCNQVDKESTVQMNYVSNVSKSWLLMIQQTEQLSRIMKTHAEDLNSGPLHRLTMMIKDKQQVKKSYIGVHQQIEAEMIKVTKTELEKLKCSYRQLIKEMNSAKEKYKEALAKG---KETEKAKERYDKATMKLHMLHNQYVLALKGAQLHQN-QYYDITLPLLLDSLQKMQEEMIKALKGIFDEYSQITSLVTEEIVNVHKEIQMSVEQIDPSTEYNNFIDVHRTTAAKEQEIEFDTSLLEENE---NLQANEIMWNNLTAESLQVMLKTLAEELMQTQQMLLNK--------EEAVLELEKRIEESSETCEKKSDIVLLLSQKQALEELKQSVQQLRCTEAKFSAQKELLEQKVQ-----------------------------ENDGKEPPPVVNYEEDARSVT-------SMERKERLSKFESIRHSIAGIIRSPKSALGSSALSDMISISEKPLAEQDWYHGAIPRIEAQELLKKQGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYVDNMYRFEGTGFSNIPQLIDHHYTTKQVITKKSGVVLLNPI-----PKDKKWILSHEDVILGELLGKGNFGEVYKGTLKD-KTSVAVKTCK-EDLPQELKIKFLQEAKILKQYDHPNIVKLIGVCTQRQPVYIIMELVSGGDFLTFLRRKKDELKLKQLVKFSLDAAAGMLYLESKNCIHRDLAARNCLVGENNVLKISDFGMSR-QEDGGVYSSSGLKQIPIKWTAPEALNYGRYSSESDVWSFGILLWETFSLGVCPYPGMTNQQAREQVERGYRMSAPQHCPEDISKIMMKCWDYKPENRPKFSELQKELTIIKR 819 The following BLAST results are available for this feature:
BLAST of TCONS_00011512 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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