TCONS_00011514 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011514
Unique NameTCONS_00011514
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011514 ID=TCONS_00011514|Name=TCONS_00011514|organism=Clytia hemisphaerica|type=transcript|length=355bp
GAAAAAATGTTTGATTATAAATACTGTATTGATTTGAGTCAAATTGACCA
TCATGAGTTGCTAAAGCTAAAGGAAAATCAGAATGTTGTTGAAATGATCG
ATTTCGATATTCGATTCGATGATGAAGAAACAGAGATATCGTACCAACGA
AATattcaaacatttttaaacGAATTACCTGAAATACTTCGAAACGGTGA
GATAAAGACCAAACGCATAATCAGGATGAGCGATGTCAATATCGAAAAGG
GAATTGTTTTAAAATCCCAATTTTACGAATGGATTAGTTTGATTATGCCA
GTTATTAATGTTTGGAAAATTTACCAATGGTTGATTATTAAATTGGACAT
AAAAC
Run BLAST on NCBI

protein sequence of TCONS_00011514-protein

>TCONS_00011514-protein ID=TCONS_00011514-protein|Name=TCONS_00011514-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
EKMFDYKYCIDLSQIDHHELLKLKENQNVVEMIDFDIRFDDEETEISYQR
NIQTFLNELPEILRNGEIKTKRIIRMSDVNIEKGIVLKSQFYEWISLIMP
VINVWKIYQWLIIKLDIK
Run BLAST on NCBI

transcript from alignment at sc0000128:77180..77534

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011514 ID=TCONS_00011514|Name=TCONS_00011514|organism=Clytia hemisphaerica|type=transcript|length=355bp|location=Sequence derived from alignment at sc0000128:77180..77534 (Clytia hemisphaerica)
GTTTTATGTCCAATTTAATAATCAACCATTGGTAAATTTTCCAAACATTA
ATAACTGGCATAATCAAACTAATCCATTCGTAAAATTGGGATTTTAAAAC
AATTCCCTTTTCGATATTGACATCGCTCATCCTGATTATGCGTTTGGTCT
TTATCTCACCGTTTCGAAGTATTTCAGGTAATTCgtttaaaaatgtttga
atATTTCGTTGGTACGATATCTCTGTTTCTTCATCATCGAATCGAATATC
GAAATCGATCATTTCAACAACATTCTGATTTTCCTTTAGCTTTAGCAACT
CATGATGGTCAATTTGACTCAAATCAATACAGTATTTATAATCAAACATT
TTTTC

Coding sequence (CDS) from alignment at sc0000128:77180..77534

>TCONS_00011514 ID=TCONS_00011514|Name=TCONS_00011514|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at sc0000128:77180..77534 (Clytia hemisphaerica)
TTTTATGTCCAATTTAATAATCAACCATTGGTAAATTTTCCAAACATTAA
TAACTGGCATAATCAAACTAATCCATTCGTAAAATTGGGATTTTAAAACA
ATTCCCTTTTCGATATTGACATCGCTCATCCTGATTATGCGTTTGGTCTT
TATCTCACCGTTTCGAAGTATTTCAGGTAATTCgtttaaaaatgtttgaa
tATTTCGTTGGTACGATATCTCTGTTTCTTCATCATCGAATCGAATATCG
AAATCGATCATTTCAACAACATTCTGATTTTCCTTTAGCTTTAGCAACTC
ATGATGGTCAATTTGACTCAAATCAATACAGTATTTATAATCAAACATTT
TTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006445XLOC_006445Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011514-exon-sc0000128-1491911889:77180..77534TCONS_00011514-exon-sc0000128-1491911889:77180..77534Clytia hemisphaericaexon
TCONS_00011514-exon-sc0000128-1510915933:77180..77534TCONS_00011514-exon-sc0000128-1510915933:77180..77534Clytia hemisphaericaexon
TCONS_00011514-exon-sc0000128-1575043694:77180..77534TCONS_00011514-exon-sc0000128-1575043694:77180..77534Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011514-proteinTCONS_00011514-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000128supercontigsc0000128:77180..77534 .
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.292477	0	0	0	0	0.16161	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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