TCONS_00011519 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011519
Unique NameTCONS_00011519
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length833

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011519 ID=TCONS_00011519|Name=TCONS_00011519|organism=Clytia hemisphaerica|type=transcript|length=833bp
GTTACAAATAAGCTTATTTATGAGTGATTCGAATTTCGGCCACCACTCAA
TTAAAGAAGTCTGAACTTAGTTATATAATAAGAGTCAATGTTTTTGAATA
GTTTTGCTCAGAGTTTAAGATCATCGTGAAGTGACAAAGATTTCAGAGTG
TTTCAATGATCGTTGCAggaatttcacttttttaatGAACGAGAATCCAA
TATTGTGAGTTTTTGTATGGGTAACGACTTTTAGGAATACATACTTTGAC
ATCGTTTAAATTGATCGTTACTTTTGGTTTAGTCTTCTAAATTGTTGGTT
TTGCTTATGAACCCATGGATTTAGtatgaatcgcagacctctacaaaacc
ccaggtagtataagtACAACTATAAGGAGCATGTATTTCACCTAAAATCG
CGTTGGCTCAAAGTATATTAACAGTTTCATTACTTACAAAAAGAAACAGC
AAAACACGCCCTCCTCACGGGATCTCGCACGGGAGGATACCGCACCGGAA
CCAGTTTCACGTACAAGCTCTTTTTAACGGAATTTTAATTGATTAGAATT
TGAACAGCATGAACCAACATTAAGATTGACAACTATAAGGATAACTATAA
GATTGACATGTGAGTTGTCAGATTTGACTTTAGAAGGCCGGCCTTGTAAT
AGTTGAAATCAGTGGTATTCTgtacatagatttataaagcccgaaaagct
agatggcgtacttttgctgaaaagtgtgccgaggttaggtaggaaatcct
acctaagtcacgtgacattacaataaaatttcagcacttgaccaatcaga
agctttgcgtgtttttgaaaacaatagcagcaa
Run BLAST on NCBI

transcript from alignment at sc0000128:187116..187948

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011519 ID=TCONS_00011519|Name=TCONS_00011519|organism=Clytia hemisphaerica|type=transcript|length=833bp|location=Sequence derived from alignment at sc0000128:187116..187948 (Clytia hemisphaerica)
ttgctgctattgttttcaaaaacacgcaaagcttctgattggtcaagtgc
tgaaattttattgtaatgtcacgtgacttaggtaggatttcctacctaac
ctcggcacacttttcagcaaaagtacgccatctagcttttcgggctttat
aaatctatgtacAGAATACCACTGATTTCAACTATTACAAGGCCGGCCTT
CTAAAGTCAAATCTGACAACTCACATGTCAATCTTATAGTTATCCTTATA
GTTGTCAATCTTAATGTTGGTTCATGCTGTTCAAATTCTAATCAATTAAA
ATTCCGTTAAAAAGAGCTTGTACGTGAAACTGGTTCCGGTGCGGTATCCT
CCCGTGCGAGATCCCGTGAGGAGGGCGTGTTTTGCTGTTTCTTTTTGTAA
GTAATGAAACTGTTAATATACTTTGAGCCAACGCGATTTTAGGTGAAATA
CATGCTCCTTATAGTTGTacttatactacctggggttttgtagaggtctg
cgattcataCTAAATCCATGGGTTCATAAGCAAAACCAACAATTTAGAAG
ACTAAACCAAAAGTAACGATCAATTTAAACGATGTCAAAGTATGTATTCC
TAAAAGTCGTTACCCATACAAAAACTCACAATATTGGATTCTCGTTCatt
aaaaaagtgaaattccTGCAACGATCATTGAAACACTCTGAAATCTTTGT
CACTTCACGATGATCTTAAACTCTGAGCAAAACTATTCAAAAACATTGAC
TCTTATTATATAACTAAGTTCAGACTTCTTTAATTGAGTGGTGGCCGAAA
TTCGAATCACTCATAAATAAGCTTATTTGTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006450XLOC_006450Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011519-exon-sc0000128-1491911889:187116..187948TCONS_00011519-exon-sc0000128-1491911889:187116..187948Clytia hemisphaericaexon
TCONS_00011519-exon-sc0000128-1510915933:187116..187948TCONS_00011519-exon-sc0000128-1510915933:187116..187948Clytia hemisphaericaexon
TCONS_00011519-exon-sc0000128-1575043694:187116..187948TCONS_00011519-exon-sc0000128-1575043694:187116..187948Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000128supercontigsc0000128:187116..187948 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.192733	0.24271	0.40413	0.196384	0.341331	0.181763	0.230751	0.275224	0.294329	0.180049	0	0.0789838	0.151893	0.118059	0.38929	0.242977	0.341698	0.482251	0.0606632	0.126655	0.22105	0.0808844	0.196482	0.178576	0.122086	0.544925	0.634276	0.673357	0	0.0644809
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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