TCONS_00011524 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011524
Unique NameTCONS_00011524
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1000

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011524 ID=TCONS_00011524|Name=TCONS_00011524|organism=Clytia hemisphaerica|type=transcript|length=1000bp
TTAATTACGAAATCGCGTGAGATTAATCAAATTTTCAAGATCAAATTTTG
GCTCAAAACTGCTCAAAATAACCCTAAAAATTGGCTATTCGTGTCAAAAA
TTGGCGTTTCCAACGCcattttcaaatgttattttggctgattttcgcca
aaattgattCGATTAACGAACGTTACTGAAATTTCTCTCATCGTAAACTC
GTAAGCTTTTCAAGTTTTCGAAATTACAAAATAAGCCATTAATTCAATGG
CCGCAAAATTATCGCAACTAACGTAACCGGTTTCTTAACCAATTTTTGGA
TTTATGTAGAAAATAATCAATGATTAAAAGTCCTTTCAAATGATGCATCT
CATGTTGAAAAACACGTGCTGTCCATCCACTGGATACAAATTTCACTGGA
TTTCCATAACGATCTAATCCTTCcatttcaattttcttgaaacgTTCAAC
GTCGCCGGTAGTCATAGGCAGACTCAAACAACCTTCCTCAAATAAAGTTG
TATCAAAATCCAAAACACGCATTTTCGGATTTACTAAAACGGTTAACGGG
AAAATACGCATATCCCGTTTTTCTACTTCTCGTTGACCGTAATATTCGAC
TGAATTTTTATAATCTTCTTCTGCAAATTCAACAATGATCAATTTTAAAT
TGTACCCAACTTGAGTTGCTGCTAGTCCTTGGCCATAATTTTCTTTCATT
ATCTTAATCATCTTATCTACCAACGTTTGAAATTCATCCGATCGAATTTC
GTCTTCAGTGACATCACGTGACGGTTTACGTAATATGACGTCATCGTGAT
GACGTATTCTTAAATCTTGTTCAAGCTTCAAAAGATTGCTGGAGAAACGG
AAAAGCAAAGACACCATcgatttgttttgattaatctctattttcttatt
tgttttttttcctggaaagtaaaaaatataaaatttcaaattagactTTG
AAGCAATAAAGTTTCAGGGGTCCGTCTCTGCTATTTTCGTGCGAAATGCC
Run BLAST on NCBI

protein sequence of TCONS_00011524-protein

>TCONS_00011524-protein ID=TCONS_00011524-protein|Name=TCONS_00011524-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MVSLLFRFSSNLLKLEQDLRIRHHDDVILRKPSRDVTEDEIRSDEFQTLV
DKMIKIMKENYGQGLAATQVGYNLKLIIVEFAEEDYKNSVEYYGQREVEK
RDMRIFPLTVLVNPKMRVLDFDTTLFEEGCLSLPMTTGDVERFKKIEMEG
LDRYGNPVKFVSSGWTARVFQHEMHHLKGLLIIDYFLHKSKNWLRNRLR
Run BLAST on NCBI

transcript from alignment at sc0000128:338942..339941

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011524 ID=TCONS_00011524|Name=TCONS_00011524|organism=Clytia hemisphaerica|type=transcript|length=1000bp|location=Sequence derived from alignment at sc0000128:338942..339941 (Clytia hemisphaerica)
GGCATTTCGCACGAAAATAGCAGAGACGGACCCCTGAAACTTTATTGCTT
CAAagtctaatttgaaattttatattttttactttccaggaaaaaaaaca
aataagaaaatagagattaatcaaaacaaatcgATGGTGTCTTTGCTTTT
CCGTTTCTCCAGCAATCTTTTGAAGCTTGAACAAGATTTAAGAATACGTC
ATCACGATGACGTCATATTACGTAAACCGTCACGTGATGTCACTGAAGAC
GAAATTCGATCGGATGAATTTCAAACGTTGGTAGATAAGATGATTAAGAT
AATGAAAGAAAATTATGGCCAAGGACTAGCAGCAACTCAAGTTGGGTACA
ATTTAAAATTGATCATTGTTGAATTTGCAGAAGAAGATTATAAAAATTCA
GTCGAATATTACGGTCAACGAGAAGTAGAAAAACGGGATATGCGTATTTT
CCCGTTAACCGTTTTAGTAAATCCGAAAATGCGTGTTTTGGATTTTGATA
CAACTTTATTTGAGGAAGGTTGTTTGAGTCTGCCTATGACTACCGGCGAC
GTTGAAcgtttcaagaaaattgaaatgGAAGGATTAGATCGTTATGGAAA
TCCAGTGAAATTTGTATCCAGTGGATGGACAGCACGTGTTTTTCAACATG
AGATGCATCATTTGAAAGGACTTTTAATCATTGATTATTTTCTACATAAA
TCCAAAAATTGGTTAAGAAACCGGTTACGTTAGTTGCGATAATTTTGCGG
CCATTGAATTAATGGCTTATTTTGTAATTTCGAAAACTTGAAAAGCTTAC
GAGTTTACGATGAGAGAAATTTCAGTAACGTTCGTTAATCGaatcaattt
tggcgaaaatcagccaaaataacatttgaaaatgGCGTTGGAAACGCCAA
TTTTTGACACGAATAGCCAATTTTTAGGGTTATTTTGAGCAGTTTTGAGC
CAAAATTTGATCTTGAAAATTTGATTAATCTCACGCGATTTCGTAATTAA

Coding sequence (CDS) from alignment at sc0000128:338942..339941

>TCONS_00011524 ID=TCONS_00011524|Name=TCONS_00011524|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at sc0000128:338942..339941 (Clytia hemisphaerica)
ATGGTGTCTTTGCTTTTCCGTTTCTCCAGCAATCTTTTGAAGCTTGAACA
AGATTTAAGAATACGTCATCACGATGACGTCATATTACGTAAACCGTCAC
GTGATGTCACTGAAGACGAAATTCGATCGGATGAATTTCAAACGTTGGTA
GATAAGATGATTAAGATAATGAAAGAAAATTATGGCCAAGGACTAGCAGC
AACTCAAGTTGGGTACAATTTAAAATTGATCATTGTTGAATTTGCAGAAG
AAGATTATAAAAATTCAGTCGAATATTACGGTCAACGAGAAGTAGAAAAA
CGGGATATGCGTATTTTCCCGTTAACCGTTTTAGTAAATCCGAAAATGCG
TGTTTTGGATTTTGATACAACTTTATTTGAGGAAGGTTGTTTGAGTCTGC
CTATGACTACCGGCGACGTTGAAcgtttcaagaaaattgaaatgGAAGGA
TTAGATCGTTATGGAAATCCAGTGAAATTTGTATCCAGTGGATGGACAGC
ACGTGTTTTTCAACATGAGATGCATCATTTGAAAGGACTTTTAATCATTG
ATTATTTTCTACATAAATCCAAAAATTGGTTAAGAAACCGGTTACGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006455XLOC_006455Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011524-proteinTCONS_00011524-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011524-exon-sc0000128-1491911889:338942..339941TCONS_00011524-exon-sc0000128-1491911889:338942..339941Clytia hemisphaericaexon
TCONS_00011524-exon-sc0000128-1510915933:338942..339941TCONS_00011524-exon-sc0000128-1510915933:338942..339941Clytia hemisphaericaexon
TCONS_00011524-exon-sc0000128-1575043694:338942..339941TCONS_00011524-exon-sc0000128-1575043694:338942..339941Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000128supercontigsc0000128:338942..339941 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.8725	11.9841	18.2313	19.4263	4.77832	2.58099	6.51603	5.99226	6.38748	5.33703	3.95335	4.68975	1.78977	2.44728	3.1326	3.52575	5.58923	4.90052	1.52571	2.29503	4.68344	3.29972	10.3881	7.66763	2.60039	3.52415	1.47602	1.3127	4.43059	4.36191
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023635Peptide_deformylase
Blast
[Close]
BLAST of TCONS_00011524 vs. Swiss-Prot (Human)
Match: DEFM (Peptide deformylase, mitochondrial OS=Homo sapiens GN=PDF PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.163e-28
Identity = 57/159 (35.85%), Postives = 85/159 (53.46%), Query Frame = -2 
Query:  316 DVILRKPSRDVTEDEIRSDEFQTLVDKMIKIMKENYGQGLAATQVGYNLKLIIVEFAEEDYKNSVEYYGQREVEKRDMRIFPLTVLVNPKMRVLDFDTTLFEEGCLSLPMTTGDVERFKKIEMEGLDRYGNPVKFVSSGWTARVFQHEMHHLKGLLIID 792
            D +LR  +  V   ++   E Q L  +++++M+     GL+A Q+G   +++ +E  E   +        R+   R M  FPL V VNP +RVLD     F EGC S+      V RF+ +++ GLD  G  V + +SGW AR+ QHEM HL+G L ID
Sbjct:   72 DPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELPEALCRECPP----RQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFID 226
The following BLAST results are available for this feature:
BLAST of TCONS_00011524 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DEFM1.163e-2835.85Peptide deformylase, mitochondrial OS=Homo sapiens... [more]
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