TCONS_00011551 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00011551
Unique Name	TCONS_00011551
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1807

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000130:437423..441527+
coding sequence from alignment at sc0000130:437423..441527+

transcript sequence

>TCONS_00011551 ID=TCONS_00011551|Name=TCONS_00011551|organism=Clytia hemisphaerica|type=transcript|length=1807bp
ACGAATTCAGATCTTTACAAGTGAATTCTTTACGAAAAGATCTACAATCT
TCCCGCCTAAACATCAATCAGTCAACACGACATTTTTCTTCCAGATATTG
ACAGTAGATATACGACACATTAACTATCACTCTCCAAcggtcaaaatttt
cttcatacGAGTAGAAAACGTGTCCGAGTTTGACCTGACCGTTATCGAGT
TGAACAACTCCACTTTAAGTGCTGTTAACATAACATTCGTCGGTCGCTAC
AATCGCAGTCTGATAAGTGACAAGTTGGAAttcgaaatttcaaattacCA
ATTTCAGTCTCAAGCCAAACATTATAATATAAGTCTCAATTTTTATAACG
GTACATCCACACTGAACAAGATCATTCAAACAGTTTTGATGACCGTTGAA
ATGACGAGAACGAATGAAGGGAAATTGAAGTTTTGGATGGTTTTTCATGC
ACTGTATCCTCTTGAAGAATATCAATATTCTTGGTGGATAACAAAGAACA
CTGAGGCAATGATTGGTAATTCATTAAGTATAATTTATGAAGATATTTGC
GAACATTATCAAGCATCCTTGAAACATCCTAAACTGACGCAATCAAAGTT
CACTTTTAAATACGAGGGTTGCCCGAAGACTCACATCATTAATGACATCA
TATTTAAACTGACCAGTTCTGTCAACCTTGAACTTACAATTAATTACGTC
GTTCGGATTCCGATAAAGTATTATCAAGGCCGGCTGAAATGTTTACGTCT
AGAGCCAGGCGATGGATCACGATACGGTTTCTCAGTTGACGGAGAGAAGA
TCTGTTCTGAAATAATGGGACATTTGGGAAAATGGATTAATTTCTCTTTG
GATAATGAAGAGTATGTTGCCAACTTCAGCCATACTTTTAAAAGCCAGAT
GGATGGACAATATGCTCATAGCTTTCTGCATGTTGAAGACACGCCATTTG
GCTCACAACACAAGTCGCTGACCATCCTTCTTAACGAGAAAGAGAAAGAA
ATAGATAAGCCGGATAATGCGACGTGTCAACCACCTGTCGTTCAACTGCT
AGGACTGGGTACTAATCTCTCATCAAGCATGACTGAGTTTCACCGCAGTC
ATTTCGTCACTCTACAAATACTTCAAACTATTAATTGTCAAGATTCGAAA
GTCACCAAAACATCATGGCAGATATTCACCAATAATTCGCAAACTGGAAA
CTTTGACCAGCCTTTCAATACAAAGGAAGCTCGTTCAGATGGCCTAGACT
TTCTTCTCGGCAAAAACAGTCTTCCGTACGGAGTGTACAAGATTTGTGCT
ACCACGGAGATGGCGATTGATCTAAGTATCTTTGGCGAGGCTTGTGGTTT
CTTAAGAATTACGCCCACACCTCTGATGGCGGAAATATCGGGCGGTGTAG
AAACGATAGTATCGGTCGAAGACGATTATGTAATGGATGCAAGTGGTTCG
AACGATCCAGATACAGAGCACCAAACACATTTACACTTCATTTTCCTGTG
TGGTTCACACCGGGTTACCACTCAAACTGTAGAAGATATCACCAAGCTAC
CTCTTGTACAGTTCAATACATCTCATGTAGGAAACAGCTCTACAACAGAC
AATTCTACGagTGGCTGTTTTGGCTCAGAATTGAGACGCTTTTCAAACCA
AACGAATACTTCTTCTTTTACGTTACCCAGTGAATATCTGCTACCGAATC
TGACGTTGAACATTTCAGTTTTGGTGTACACTTTGGAACCATCAATACGT
TCTGCATGGTACAACCAAACGGTTAGATTTGTGGCCGGCAACCCACCGCA
ACTCAAA

Run BLAST on NCBI

protein sequence of TCONS_00011551-protein

>TCONS_00011551-protein ID=TCONS_00011551-protein|Name=TCONS_00011551-protein|organism=Clytia hemisphaerica|type=polypeptide|length=602bp
RIQIFTSEFFTKRSTIFPPKHQSVNTTFFFQILTVDIRHINYHSPTVKIF
FIRVENVSEFDLTVIELNNSTLSAVNITFVGRYNRSLISDKLEFEISNYQ
FQSQAKHYNISLNFYNGTSTLNKIIQTVLMTVEMTRTNEGKLKFWMVFHA
LYPLEEYQYSWWITKNTEAMIGNSLSIIYEDICEHYQASLKHPKLTQSKF
TFKYEGCPKTHIINDIIFKLTSSVNLELTINYVVRIPIKYYQGRLKCLRL
EPGDGSRYGFSVDGEKICSEIMGHLGKWINFSLDNEEYVANFSHTFKSQM
DGQYAHSFLHVEDTPFGSQHKSLTILLNEKEKEIDKPDNATCQPPVVQLL
GLGTNLSSSMTEFHRSHFVTLQILQTINCQDSKVTKTSWQIFTNNSQTGN
FDQPFNTKEARSDGLDFLLGKNSLPYGVYKICATTEMAIDLSIFGEACGF
LRITPTPLMAEISGGVETIVSVEDDYVMDASGSNDPDTEHQTHLHFIFLC
GSHRVTTQTVEDITKLPLVQFNTSHVGNSSTTDNSTSGCFGSELRRFSNQ
TNTSSFTLPSEYLLPNLTLNISVLVYTLEPSIRSAWYNQTVRFVAGNPPQ
LK

Run BLAST on NCBI

transcript from alignment at sc0000130:437423..441527+

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00011551 ID=TCONS_00011551|Name=TCONS_00011551|organism=Clytia hemisphaerica|type=transcript|length=4105bp|location=Sequence derived from alignment at sc0000130:437423..441527+ (Clytia hemisphaerica)
ACGAATTCAGATCTTTACAAGTGAATTCTTTACGAAAAGATCTACAATCT
TCCCGCCTAAACATCAATCAGTCAACACGACATTTTTCTTCCAGATATTG
ACAGTAGATATACGACACATTAACTATCACTCTCCAAcggtcaaaatttt
cttcatacGAGTAGAAAACGTGTCCGAGTTTGACCTGACCGTTATCGAGT
TGAACAACTCCACTTTAAGTGCTGTTAACATAACATTCGTCGGTCGCTAC
AATCGCAGTCTGATAAGTGACAAGTTGGAAttcgaaatttcaaattacCA
ATTTCAGTCTCAAGCCAAACATTATAATATAAGTCTCAATTTTTATAACG
GTACATCCACACTGAACAAGATCATTCAAACAGTTTTGATGACCGTTGAA
ATGACGAGAACGAATGAAGGGAAATTGAAGTTTTGGATGGTTTTTCATGC
ACTGTATCCTCTTGAAGAATATCAATATTCTTGGTGGATAACAAAGAACA
CTGAGGCAATGATTGGTAATTCATTAAGTATAATTTATGAAGATATTTGC
GAACATTATCAAGCATCCTTGAAACATCCTAAACTGACGCAATCAAAGTT
CACTTTTAAATACGAGGGTTGCCCGAAGACTCACATCATTAATGACATCA
TATTTAAACTGACCAGTTCTGTCAACCTTGAACTTACAATTAATTACGTC
GTTCGGATTCCGATAAAGTATTATCAAGGCCGGCTGAAATGTTTACGTCT
AGAGCCAGGCGATGGATCACGATACGGTTTCTCAGTTGACGGAGAGAAGA
TCTGTTCTGAAATAATGGGACATTTGGGAAAATGGATTAATTTCTCTTTG
GATAATGAAGAGTATGTTGCCAACTTCAGCCATACTTTTAAAGTAAGcca
ttgttctttcttttgtgcTGTCCAAGGATGTCTTCTTAAGAaaatttctg
ttgttttttttcaaaagctgcCGAGTAAACATTACTTTAACTTTTAATTA
AATTGAGATTCGCGAGATTTAATGCGAGCCAAAAAATCGCGAAGTTTTTG
GATTGGGTTAAAATGCAAAAGATTATATTTCAACCAAATATCAGAAAAGA
TACTGCGAATAGACTCAAAAGTACCTATTTTCAAGAGTGAATATGTTATC
AATTTAGTTAATATGAGTGGTGCATATGAAACCCCGATCGACAACTGTGT
CCCTGAATCAAATGAAATCGATTCTTAAACCTTTCAGAAGTATGAATTTA
TTTACACTATTTATCTTACAGAGCCAGATGGATGGACAATATGCTCATAG
CTTTCTGCATGTTGAAGACACGCCATTTGGCTCACAACACAAGTCGCTGA
CCATCCTTCTTAACGAGAAAGAGAAAGAAATAGATAAGCCGGATAATGCG
ACGTGTCAACCACCTGTCGTTCAACTGCTAGGTAGATCAGTTTGAGTGAA
CCTTTCCAAAATAATACTGTAAAATCCGTATGCTTCGAAATATTTTTCAG
GACCTTCGTCAAATCATAGTCGTTAtaaaaaaaccctggtctggtaatgt
attgttttagtttggttttttgttcaatttttgcttttttgttcaatttt
tgctttgttgtaaataaaaggcaagttacgatttgcatacttttttatga
cgttaCCATTTTTGACTCTTGGGATTGGTTGGTTTATTTCGTAagtcaca
tgatcaaaaactatgcaaaacaaatcaatgtAAGGTACAAAACCTCGAAC
GGTAATtcatagaaagaaacaaaagccttccagaccgggtgatttataat
gactatggtcaAACCTACGCAAATTTAGCATAGTCCTGTTACAGTAGAGT
TTCGTTAATTCGAACCTCTTTaaatcgaatgtctccttaaatcGAACAAG
TTTTTTCGTCTCTCCAGCTAACAAAACCTTATAACTAATCATTGATAACA
AACATCACGGCATCTGTGTCGAGCAGACTTCCCCGTTTCACAATTGTTCA
CACACCTCTCATTTCTCAACCCTCAGGACTGGGTACTAATCTCTCATCAA
GCATGACTGAGTTTCACCGCAGTCATTTCGTCACTCTACAAATACTTCAA
ACTATTAATTGTCAAGATTCGAAAGTCACCAAAACATCATGGCAGATATT
CACCAATAATTCGCAAACTGGAAACTTTGACCAGCCTTTCAATACAAAGG
AAGCTCGTTCAGATGGCCTAGACTTTCTTCTCGGCAAAAACAGTCTTCCG
TACGGAGTGTACAAGATTTGTGCTACCACGGAGATGGCGATTGATCTAAG
TATCTTTGGCGAGGCTTGTGGTTTCTTAAGAATTACGCCCACACCTCTGA
TGGCGGAAATATCGGGCGGTGTAGAAACGATAGTATCGGTCGAAGACGAT
GTAAGGAACAGTTATTTTGTTACATCTAGATGCAGTTTATCCGGCCTATT
CTGTCAAAATGATAATGAGATTAAAAAGCAAATCAAAACCATCCTCTTGT
ATGAGTAACTGAAAGGAATAGCCTCAGATGACTAACTtacattttttgtt
cattcttgaACCTTCTTGTATGCCAATGAGTTCAGAAAGTCGAGTTCCGA
TAGTCTAAAGTCAATGTGATGCTTTCTATTATGGTCAATACAACTCGACT
TCTTTCGATTTTTTCGATGCAAAGATTTGAGCTTTCCATCTATCTTCTGC
CATCTCTAACGCGGCAGAAAATTGGCCGTCTAAATATTCGGTCGTATCGT
CCCCTAGTTTCCTGCTTGGTCACTCCTCCGGAAATTTCAGACTGCCAGGC
TATCAAATCACCCCCtcttaaaaatttaagaatttctGTTAAAAATGACG
CCTTTTTAAAACCTCCTCTGAATTTCAACTTTTcctttgccccccccccc
ccctcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNcccccccccccccctctgacAGTTTA
TTGAAACAGAATGGTCCCTAGCAGAAGGAAGAGAGAAAATATGCATCCAT
TAAATCAACCATTTTTGTTTCAGTATGTAATGGATGCAAGTGGTTCGAAC
GATCCAGATACAGAGCACCAAACACATTTACACTTCATTTTCCTGTGTGG
TTCACACCGGGTTACCACTCAAACTGTAGAAGATATCACCAAGCTACCTC
TTGTACAGTTCAATACATCTCATGTAGGAAACAGCTCTACAACAGACAAT
TCTACGGTATACCACCCTTTTGAATTCGACTTTattttcttaaatatttt
ctcgCAATCGAACCGCTTAACAGATTGGTTTCGTGGGAACTAATTGGTGA
TCTTTAACATCCTAACGTTATCTAAGCTAATTCTAATGAGCTAGAATGAG
AAAAATCTTCTTTATGAAATTGCtgattgtaaattttttttcaatttcag
agTGGCTGTTTTGGCTCAGAATTGAGACGCTTTTCAAACCAAACGAATAC
TTCTTCTTTTACGTTACCCAGTGAATATCTGCTACCGAATCTGACGTAAG
TCTCTCAAATGACGTAATTCTTATCTCGTTTGTTCCACTCTGTCTTGAAA
TAGTATTTTTCTAGAACTTTTCTTGTGTAAGCATTGGACCCTCTGTTGAA
GAGGTCCATTTCCGCTAAGAGGAGGGGGCGGTGAAGTTTAATAtttggcg
gaattccataggaaTATACGAAAAAACTGGAATTCCATCGGGATAacatt
ttaaattctaaaaaaaagtcAGAATTCCGTGGGGTTTAAACCTAcgaatt
gcctggaattccagatTACACCATTCCAAGCAACAAAGTGTTAGACCTCC
ACATGGTTTACGGTTTTCTAAAAAATCCCATTTCTAAATCTAACCAAAAT
TAAGTAGTTACCATTATCCATTTTTCTCACCCTCTCACATTGGCAACACT
AGGTTGAACATTTCAGTTTTGGTGTACACTTTGGAACCATCAATACGTTC
TGCATGGTACAACCAAACGGTTAGATTTGTGGCCGGCAACCCACCGCAAC
TCAAA

Coding sequence (CDS) from alignment at sc0000130:437423..441527+

>TCONS_00011551 ID=TCONS_00011551|Name=TCONS_00011551|organism=Clytia hemisphaerica|type=CDS|length=1806bp|location=Sequence derived from alignment at sc0000130:437423..441527+ (Clytia hemisphaerica)
CGAATTCAGATCTTTACAAGTGAATTCTTTACGAAAAGATCTACAATCTT
CCCGCCTAAACATCAATCAGTCAACACGACATTTTTCTTCCAGATATTGA
CAGTAGATATACGACACATTAACTATCACTCTCCAAcggtcaaaattttc
ttcatacGAGTAGAAAACGTGTCCGAGTTTGACCTGACCGTTATCGAGTT
GAACAACTCCACTTTAAGTGCTGTTAACATAACATTCGTCGGTCGCTACA
ATCGCAGTCTGATAAGTGACAAGTTGGAAttcgaaatttcaaattacCAA
TTTCAGTCTCAAGCCAAACATTATAATATAAGTCTCAATTTTTATAACGG
TACATCCACACTGAACAAGATCATTCAAACAGTTTTGATGACCGTTGAAA
TGACGAGAACGAATGAAGGGAAATTGAAGTTTTGGATGGTTTTTCATGCA
CTGTATCCTCTTGAAGAATATCAATATTCTTGGTGGATAACAAAGAACAC
TGAGGCAATGATTGGTAATTCATTAAGTATAATTTATGAAGATATTTGCG
AACATTATCAAGCATCCTTGAAACATCCTAAACTGACGCAATCAAAGTTC
ACTTTTAAATACGAGGGTTGCCCGAAGACTCACATCATTAATGACATCAT
ATTTAAACTGACCAGTTCTGTCAACCTTGAACTTACAATTAATTACGTCG
TTCGGATTCCGATAAAGTATTATCAAGGCCGGCTGAAATGTTTACGTCTA
GAGCCAGGCGATGGATCACGATACGGTTTCTCAGTTGACGGAGAGAAGAT
CTGTTCTGAAATAATGGGACATTTGGGAAAATGGATTAATTTCTCTTTGG
ATAATGAAGAGTATGTTGCCAACTTCAGCCATACTTTTAAAAGCCAGATG
GATGGACAATATGCTCATAGCTTTCTGCATGTTGAAGACACGCCATTTGG
CTCACAACACAAGTCGCTGACCATCCTTCTTAACGAGAAAGAGAAAGAAA
TAGATAAGCCGGATAATGCGACGTGTCAACCACCTGTCGTTCAACTGCTA
GGACTGGGTACTAATCTCTCATCAAGCATGACTGAGTTTCACCGCAGTCA
TTTCGTCACTCTACAAATACTTCAAACTATTAATTGTCAAGATTCGAAAG
TCACCAAAACATCATGGCAGATATTCACCAATAATTCGCAAACTGGAAAC
TTTGACCAGCCTTTCAATACAAAGGAAGCTCGTTCAGATGGCCTAGACTT
TCTTCTCGGCAAAAACAGTCTTCCGTACGGAGTGTACAAGATTTGTGCTA
CCACGGAGATGGCGATTGATCTAAGTATCTTTGGCGAGGCTTGTGGTTTC
TTAAGAATTACGCCCACACCTCTGATGGCGGAAATATCGGGCGGTGTAGA
AACGATAGTATCGGTCGAAGACGATTATGTAATGGATGCAAGTGGTTCGA
ACGATCCAGATACAGAGCACCAAACACATTTACACTTCATTTTCCTGTGT
GGTTCACACCGGGTTACCACTCAAACTGTAGAAGATATCACCAAGCTACC
TCTTGTACAGTTCAATACATCTCATGTAGGAAACAGCTCTACAACAGACA
ATTCTACGagTGGCTGTTTTGGCTCAGAATTGAGACGCTTTTCAAACCAA
ACGAATACTTCTTCTTTTACGTTACCCAGTGAATATCTGCTACCGAATCT
GACGTTGAACATTTCAGTTTTGGTGTACACTTTGGAACCATCAATACGTT
CTGCATGGTACAACCAAACGGTTAGATTTGTGGCCGGCAACCCACCGCAA
CTCAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006473	XLOC_006473	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00011551-protein	TCONS_00011551-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000130	supercontig	sc0000130:437423..441527 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.266416	0.173198	0.175962	0.0983725	0.119759	0.0709764	0.142717	0.0801658	0.0935432	0.162216	0.0449859	0.103502	0.118123	0.0766701	0.138673	0.148818	0.133332	0.170826	0.377608	0.123481	0.772759	0.722439	0.330923	1.20343	2.97957	5.36095	0.0913273	0	0	0.0251061

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002859	PKD/REJ-like
IPR014010	REJ_dom

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00011551 vs. Swiss-Prot (Human)

BLAST of TCONS_00011551 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00011551 (transcript) - C. hemisphaerica