|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011552 ID=TCONS_00011552|Name=TCONS_00011552|organism=Clytia hemisphaerica|type=transcript|length=3668bpRun BLAST on NCBI protein sequence of TCONS_00011552-protein >TCONS_00011552-protein ID=TCONS_00011552-protein|Name=TCONS_00011552-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1222bp MSMVSVSEVHSLEGQCISGCNASLTYQWYLKVLSETGYYVQIDESVLLTMRun BLAST on NCBI transcript from alignment at sc0000130:441857..452072+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011552 ID=TCONS_00011552|Name=TCONS_00011552|organism=Clytia hemisphaerica|type=transcript|length=10216bp|location=Sequence derived from alignment at sc0000130:441857..452072+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000130:441857..452072+ >TCONS_00011552 ID=TCONS_00011552|Name=TCONS_00011552|organism=Clytia hemisphaerica|type=CDS|length=3666bp|location=Sequence derived from alignment at sc0000130:441857..452072+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011552 vs. Swiss-Prot (Human)
Match: PK1L2 (Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4) HSP 1 Score: 195.282 bits (495), Expect = 4.232e-50 Identity = 114/328 (34.76%), Postives = 183/328 (55.79%), Query Frame = 1
Query: 2164 VTYNLTITKAKCLFWDEMNETWSSNGCFVDAETTPERTVCLCTHLTDFGGDVMVAPNPIDMNAVFAXXXXXXXXXXVLMVIISLFLIYIILGVWVSKKDRKDEIERQMVHVDCTNGRPIKQT-LIITVITGAGNGSGTTARVYGLLRGSKGEMVIP-LNTSENTLFKTRSTVILKITLSREIGEVDFFRVFHDNGGRSPSWYLRSILVVDTETRNEFPFVCDTWLSVESVDGQIDRTLVVATEKDLKSFHLIFASKVSKGLLDGHIWFSIFLRPAQSSFTRFRRLTACLALIFLTMLTNAMFFGASDAPGGRKIVYLGNFKVNLTGVM 3141
+T +T + C+FWDE+ ETW +GC V T+P +T CLC HLT FG +V N I+++ DN V+ + L ++Y+++ +W +KD +D+ + ++ ++ + P Q ++TV TG G+ T+++V L G GE L + +F+ + ++ +GE+ R++HDN G PSWY+ +LV D ++ F+C++WLS+ D +D+ VATE+D K F +F K S G DGHIW+SIF R A+SSFTR +R++ C +L+ TMLT+ MF+G P +K+ LG + VM
Sbjct: 1271 LTVGITTFLSHCVFWDEVQETWDDSGCQVGPRTSPYQTHCLCNHLTFFGSTFLVMSNAINIHQTAELFATFEDNPVVVTTVGCLCVVYVLVVIWARRKDAQDQAKVKVTVLE--DNDPFAQYHYLVTVYTGHRRGAATSSKVTVTLYGLDGEREPHHLADPDTPVFERGAVDAFLLSTLFPLGELRSLRLWHDNSGDRPSWYVSRVLVYDLVMDRKWYFLCNSWLSINVGDCVLDKVFPVATEQDRKQFSHLFFMKTSAGFQDGHIWYSIFSRCARSSFTRVQRVSCCFSLLLCTMLTSIMFWGVPKDPAEQKM-DLGKIEFTWQEVM 1595 The following BLAST results are available for this feature:
BLAST of TCONS_00011552 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.