TCONS_00011577 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011577
Unique NameTCONS_00011577
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1111

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011577 ID=TCONS_00011577|Name=TCONS_00011577|organism=Clytia hemisphaerica|type=transcript|length=1111bp
CTTTGTAATTCAAATGTcaatttGaactgaaaaaataaacaacagaAAAT
GAAGGTTTATTTTGTTGCAGTTTGTATCTTTCTGGCTTGTTCTCATATTC
AATGCAAAAAGCCTATCAAACTGaaatttaTCGAAGAACTTCTAGGAGAT
TCAGTGCCACTGACAAAATGTGTGGACCACCCGGCGTATGAAGAAGAACC
CGAAATGTTCAAAGAATGTCCAAAAGGTCAATCCTGTTTCTTCGTCCAAA
GAGATATCACCCTTACAATTTTTGGAACTTTCTGCGAATGGTCGTTGTCt
tcaCCGAACGAAGGGAGTGGTGATAAGAGGCCGGACAATTTTGTTGAAGA
AGAGTCCGGtgaaagcgaaagcgaaagtgaagaGAACGAAGTTGAAGGAG
AGGGGAATCCAGTCTAGAAATCGATACTTTCCATAATATATTGCAATTTA
CACAAAACACACTATCGGTCGGATTGAAGGATGTCATCCCCTGATTGCAT
AAATGAACAAACTTTGGTGTAAAGAAAATTTTGTGGATTTTGTGAATTTA
CCAAACATGAGATTTGAAACAGGTTTTTGCATTTATTATAAAGATTTATT
ACCCATTAAAACATCCTGCAACCACCAAATAAATTGCCGTCAAATTAATT
TCATCAACTTGAATATTTGTGCCaaagtttcttcctttaaggtaactTTT
ACCGAATGAAATTTCTGTTTAGTTTCTTCAAATATGAGCCGCTGCTATCT
TAGAATATTGGAAGGTTGCTCTCggcaaaaaagaaagtttgccTTCTTTT
TAATACATCAGATTATATTTAAGTGTGAACGTAAAATTCAATGTACATTT
GTGTCTAAAATTAAAAGTGGAAATTAAAAATAGAGTTGTGCGTGCGACGT
TTGTCGACGGTTGTCCTTATCAGattatgtttatttatttttgaatttta
tatatcattttgttattatttatgTAGATTTTAGCATGAATTATTTCAAC
TTTGTGAGTAACATAACTTAAAGACTTGAAAGATTTGGTTTTGAAAATGG
TTAATACTTTTTAagttctcttttgaaaatataaagatGAAAAGCTGAGA
TAagctttttt
Run BLAST on NCBI

protein sequence of TCONS_00011577-protein

>TCONS_00011577-protein ID=TCONS_00011577-protein|Name=TCONS_00011577-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
MKVYFVAVCIFLACSHIQCKKPIKLKFIEELLGDSVPLTKCVDHPAYEEE
PEMFKECPKGQSCFFVQRDITLTIFGTFCEWSLSSPNEGSGDKRPDNFVE
EESGESESESEENEVEGEGNPV
Run BLAST on NCBI

transcript from alignment at sc0000130:306539..310485-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011577 ID=TCONS_00011577|Name=TCONS_00011577|organism=Clytia hemisphaerica|type=transcript|length=3947bp|location=Sequence derived from alignment at sc0000130:306539..310485- (Clytia hemisphaerica)
CTTTGTAATTCAAATGTCAATTTGTGAGTATTTCATCGATTTCGGGAAAG
AATTGTGATTTTATCTTTCCACCTTTTGTCATTGGGATTTTCGATTCGGG
AGGGTTTTATTGGCTTCCAGGCCTTTTTAGACCATTTTCGATCCTTTAGA
TCCTGATATTGCCTATAATCTCGAGTCTAATGTTTAAGAACGATAAACTC
GGTAAACATTCACTCACCATCTGGATAAGGCTATCACTGTGTCTCACTAA
CATTCTTCCGATTGGTAGTGTGTAGGTTTCGATCACAGACTTGCACCACA
ATATGGGAATATGGTGATAGACTGTCGACCTTCACTCATATATCATTTTC
TCTCAAGCCGGCTGATAATCGAAGTATCGATTGACGTTAAATGAGCTTTA
TAGTAAAGCTCAAATTGCAGATGTAGAACGAACGATAAGCTCGGTATACA
TCTAATGTTAAAACTCAAGGTGTGGGGACACGAGAAGTTTCTTTCGCGTT
GGTGCAATGCAGCATGCTACATCCCACCAACCTAAAACGCTTTCTCGTAT
TTCCACCCCATTTTTCTTTCTACCAAGAAAAGTGAAATCTTTCTTACTTT
TGTTCTTAGGACGTATTTTGGGTATTTTTCTCACTTTTTGTCCCATGAAA
CACAGAAAGAGTGCCTCCAAGCCTTCAGAGTTAAAACTCTACTTTCCAAT
CGTAATGTAAGGCAATTTTTGAAATTTTGAGGGAATTCCCCTCTTGCACC
AAATATTATGGCAAGCATTGTATGGTTTTGGGGACGGATAAATATGGAAA
CATTTAGTTCTTGCCTTTGTTTTTTCACTATGGTAATCGAATTGCCCATA
CATTATTTTTCTGTTTTTGCACACTTTCCTGATTTGACTTTTCATGTTTC
TAATTTCAAATTTTTTCCACTTCATTTCCCTATGTTAATCAATTTTTGGT
TTGATTTTTAATTTCAGGATATTTGCGTTTATAATTAACGTTCCATTTCA
ATGTCAAATTTCAATTTGTTTTCGATCCCACATGGGAGTGTCTTTAATCA
AATTTGAAATTCGAGTGGGTCGGTCGGCTTTCAAACTGTTTCTTGGTTTG
CCGGATGAGCTTTCGTTGTTGTCATTTTATGGGGTTTTTTCATGCTCACT
TTCTTGTGAGGAAAGTTGTTGACTATAACATTTGGGCCTTGAATGTTTAT
CGAAGTGCAGTAGTACTCTCTATTTCTCTCTTATGTCGCGGCAAGGTTCA
TATAGGGGGATTATAGATTTGTTAAAAAGTTGCAAGAAATTAAACTTTTA
ATTAATTTTCGTTGAAAGGTTTAATTACTTTGCCAATTTATTTTCATTAA
AATTAAAATTTAAATTAGAAGATTTTTAAATTATTTTAGGATTTACGTGC
TAAAATTGATTAAATATTCAAATTAATTAAAGCTACTATGAAGTATACAT
GTGATAATCCGCCCCAATATAATCAAAATATATGTTCAAAAATATCATTT
ATTTTCAGACCACTCAGTGAGGCACTACTTATAAGTAAACTTTCTTTGGT
AGCCAACAACTGCCACATTTTACTAAATCGATTTCAGGATAATTTGGATG
TTTCAGTTAATTTTTAAACATTGAATTAAATAGACGATATCGGCTTCACA
TAAAAACTCAGATTTGACCCCCGAGAATTCCCCACAATGCTTTGTGCAGA
AAAAATTTCACCGTGAACTTTTTTCCGCACAAAGCATTGTGGGGAATTCT
GGGGGGTCAAATCTGAGTTTTCACGTTAAGCCGATATCGTCTATTGCCAC
TTCAGGACAACCCTGTCTTACAGCCCCGGTGGAACTTTTTTCTCAATGAG
GATAAAAATTCTTATTGAAATCCCAATGGGGATAGAAATTCTATTGTTTC
AAGGTTAAAAAATTCAATGGGGATGGTTTTGAAGTGCAATTTTTAATCAT
TGAATATCACATGGGATAAAATAAAAGTTAATTTCTCAGTGGGGCTGCAA
TTCTAGGGTATTTTCCTACCGAGGACCAAATTTTTGCCAATTTTTCCAGT
GGGGCAGGGGTCTCAGTGGGCCTGTGAGACAGGGGTATTACAGGTATCTA
ATAAACTTCGAAAACTATCCGATTTCCACTTTCAGGAACTGAAAAAATAA
ACAACAGAAAATGAAGGTTTATTTTGTTGCAGTTTGTATCTTTCTGGCTT
GTTCTCATATTCAATGCAAAAAGCCTATCAAACTGGTAAGTGCTTTACTG
CTACATTAATAGTTCATTAAAACCTTTCGTAAAGTCAACCTTAACTTCTC
TTGCAAGCGACATTTGTCGACGATGGCTACGTCAATATTTATCTAGAATT
TCGTAGTACAGATTTGTTTGATAATTATTGATTTTTTTTTCTTCAGAAAT
TTATCGAAGAACTTCTAGGAGATTCAGGTATGATTCTTCATTTCGCAGTC
TTAATCAGTGTCCAGTTCTGTTGCCCAAAATTTCATCAAGGAGACATTCA
TCATGGTTGCTACTATGGAAACTATCTGGCTTTATGCGTATCATCTAGCT
GTCTGGTATACACACACACTGTATTCTGACTTTATGATAAACTAAAAATC
ACTTTCTTTTCAGTGCCACTGACAAAATGTGTGGACCACCCGGCGTATGA
AGAAGAACCCGAAATGTTCAAAGAATGTCCAAAAGGTCAATCCTGTTTCT
TCGTCCAAAGAGATATCACCCTTACAATTTTTGGAACTTTCTGCGAATGG
TCGTTGTCGTAAGTATACCCTTTTACAGATGTTTTTGTCGTTCGATTTTT
AAACTTGGGACATGGATACACAGATCTAACATTAATCTTTTTGAATAGCA
AGATAATTTGATTTTTAAAACACAAATAAATATTTTTCCAAATTATTCTT
AATTTTTTTCTTAGAAAGTACAAAGAATAATTTTGCCCTAAAAAATGAAT
TGAATAAATTTTCCTTAGAAAATACATAGAATAATTTTCCTTAGAAAATA
CATAGGATTATTGTACCTTAGCAAATACATAATATAATTTTCCCGTAATT
CTCCTATATAAGGTAAACAGAACAATTTCCCCTGGAACCAACGATTTCCC
TGGAAAATACACTTTTTTCACTTTTAAATTTTTAGTTCACCGAACGAAGG
GAGTGGTGATAAGAGGCCGGACAATTTTGTTGAAGAAGAGTCCGGTGAAA
GCGAAAGCGAAAGTGAAGAGAACGAAGTTGAAGGAGAGGGGAATCCAGTC
TAGAAATCGATACTTTCCATAATATATTGCAATTTACACAAAACACACTA
TCGGTCGGATTGAAGGATGTCATCCCCTGATTGCATAAATGAACAAACTT
TGGTGTAAAGAAAATTTTGTGGATTTTGTGAATTTACCAAACATGAGATT
TGAAACAGGTTTTTGCATTTATTATAAAGATTTATTACCCATTAAAACAT
CCTGCAACCACCAAATAAATTGCCGTCAAATTAATTTCATCAACTTGAAT
ATTTGTGCCAAAGTTTCTTCCTTTAAGGTAACTTTTACCGAATGAAATTT
CTGTTTAGTTTCTTCAAATATGAGCCGCTGCTATCTTAGAATATTGGAAG
GTTGCTCTCGGCAAAAAAGAAAGTTTGCCTTCTTTTTAATACATCAGATT
ATATTTAAGTGTGAACGTAAAATTCAATGTACATTTGTGTCTAAAATTAA
AAGTGGAAATTAAAAATAGAGTTGTGCGTGCGACGTTTGTCGACGGTTGT
CCTTATCAGATTATGTTTATTTATTTTTGAATTTTATATATCATTTTGTT
ATTATTTATGTAGATTTTAGCATGAATTATTTCAACTTTGTGAGTAACAT
AACTTAAAGACTTGAAAGATTTGGTTTTGAAAATGGTTAATACTTTTTAA
GTTCTCTTTTGAAAATATAAAGATGAAAAGCTGAGATAAGCTTTTTT

Coding sequence (CDS) from alignment at sc0000130:306539..310485-

>TCONS_00011577 ID=TCONS_00011577|Name=TCONS_00011577|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at sc0000130:306539..310485- (Clytia hemisphaerica)
ATGAAGGTTTATTTTGTTGCAGTTTGTATCTTTCTGGCTTGTTCTCATAT
TCAATGCAAAAAGCCTATCAAACTGAAATTTATCGAAGAACTTCTAGGAG
ATTCAGTGCCACTGACAAAATGTGTGGACCACCCGGCGTATGAAGAAGAA
CCCGAAATGTTCAAAGAATGTCCAAAAGGTCAATCCTGTTTCTTCGTCCA
AAGAGATATCACCCTTACAATTTTTGGAACTTTCTGCGAATGGTCGTTGT
CTTCACCGAACGAAGGGAGTGGTGATAAGAGGCCGGACAATTTTGTTGAA
GAAGAGTCCGGTGAAAGCGAAAGCGAAAGTGAAGAGAACGAAGTTGAAGG
AGAGGGGAATCCAGTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006486XLOC_006486Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011577-exon-sc0000130-1575043694:310463..310485TCONS_00011577-exon-sc0000130-1575043694:310463..310485Clytia hemisphaericaexon
TCONS_00011577-exon-sc0000130-1575043694:308251..308350TCONS_00011577-exon-sc0000130-1575043694:308251..308350Clytia hemisphaericaexon
TCONS_00011577-exon-sc0000130-1575043694:308059..308089TCONS_00011577-exon-sc0000130-1575043694:308059..308089Clytia hemisphaericaexon
TCONS_00011577-exon-sc0000130-1575043694:307728..307872TCONS_00011577-exon-sc0000130-1575043694:307728..307872Clytia hemisphaericaexon
TCONS_00011577-exon-sc0000130-1575043694:306539..307350TCONS_00011577-exon-sc0000130-1575043694:306539..307350Clytia hemisphaericaexon
TCONS_00011577-exon-sc0000130-1510915933:310463..310485TCONS_00011577-exon-sc0000130-1510915933:310463..310485Clytia hemisphaericaexon
TCONS_00011577-exon-sc0000130-1510915933:308251..308350TCONS_00011577-exon-sc0000130-1510915933:308251..308350Clytia hemisphaericaexon
TCONS_00011577-exon-sc0000130-1510915933:308059..308089TCONS_00011577-exon-sc0000130-1510915933:308059..308089Clytia hemisphaericaexon
TCONS_00011577-exon-sc0000130-1510915933:307728..307872TCONS_00011577-exon-sc0000130-1510915933:307728..307872Clytia hemisphaericaexon
TCONS_00011577-exon-sc0000130-1510915933:306539..307350TCONS_00011577-exon-sc0000130-1510915933:306539..307350Clytia hemisphaericaexon
TCONS_00011577-exon-sc0000130-1491911889:310463..310485TCONS_00011577-exon-sc0000130-1491911889:310463..310485Clytia hemisphaericaexon
TCONS_00011577-exon-sc0000130-1491911889:308251..308350TCONS_00011577-exon-sc0000130-1491911889:308251..308350Clytia hemisphaericaexon
TCONS_00011577-exon-sc0000130-1491911889:308059..308089TCONS_00011577-exon-sc0000130-1491911889:308059..308089Clytia hemisphaericaexon
TCONS_00011577-exon-sc0000130-1491911889:307728..307872TCONS_00011577-exon-sc0000130-1491911889:307728..307872Clytia hemisphaericaexon
TCONS_00011577-exon-sc0000130-1491911889:306539..307350TCONS_00011577-exon-sc0000130-1491911889:306539..307350Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011577-proteinTCONS_00011577-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000130supercontigsc0000130:306539..310485 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.983308	0.805459	1.38056	1.35066	0.212167	0.167657	0.657383	0.378728	0.36459	0.780043	0.916525	1.10019	23.8829	19.7226	0.0446684	0.095872	8.59225	7.95939	79.0648	99.099	32.6286	28.7696	8.25287	17.5891	6.7567	6.29401	0.377527	0.402907	0.130967	0.0889567
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011577 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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