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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011598 ID=TCONS_00011598|Name=TCONS_00011598|organism=Clytia hemisphaerica|type=transcript|length=3980bpRun BLAST on NCBI protein sequence of TCONS_00011598-protein >TCONS_00011598-protein ID=TCONS_00011598-protein|Name=TCONS_00011598-protein|organism=Clytia hemisphaerica|type=polypeptide|length=632bp MKDMCCDCGADLRKEPGVPGELAEATTATVPVVHNIQELWVSVEEAERLARun BLAST on NCBI transcript from alignment at sc0000130:552448..567315- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011598 ID=TCONS_00011598|Name=TCONS_00011598|organism=Clytia hemisphaerica|type=transcript|length=14868bp|location=Sequence derived from alignment at sc0000130:552448..567315- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000130:552448..567315- >TCONS_00011598 ID=TCONS_00011598|Name=TCONS_00011598|organism=Clytia hemisphaerica|type=CDS|length=1899bp|location=Sequence derived from alignment at sc0000130:552448..567315- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011598 vs. Swiss-Prot (Human)
Match: CTDP1 (RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo sapiens GN=CTDP1 PE=1 SV=3) HSP 1 Score: 253.832 bits (647), Expect = 1.751e-69 Identity = 125/230 (54.35%), Postives = 161/230 (70.00%), Query Frame = 3
Query: 87 GKAVARLQEEQCEHNTVMKDMCCDCGADLRKEPGVPG-ELAEATTATVPVVHNIQELWVSVEEAERLAKQDEKQLLKSRKLVLVVDLDMTLIHTTVQPAAKVQD--VYSFTLPNHQYEYHTKLRPNAHKFLESISKYYELHIFTMGSRMYAHTIAKMLDPDGKHFAHRIRSRDEFINSFSKFHDLKALFPCGDHMVCIIDDREDVWNFAPNLIMVKPYKYFSGTDDVNDP 767
G + RL E C H VMK +C +CG DL + G + +TATV +VH++ EL VS E+AE+L ++D+++L ++RKLVL+VDLD TLIHTT Q ++ + ++ F L + HT+LRP+ FLE I+K YELH+FT GSR+YAHTIA LDP+ K F+HRI SRDE I+ FSK +L+ LFPCGD MVCIIDDREDVW FAPNLI VK Y YF GT D+N P
Sbjct: 105 GAVLVRL--EGCSHPVVMKGLCAECGQDLTQLQSKNGKQQVPLSTATVSMVHSVPELMVSSEQAEQLGREDQQRLHRNRKLVLMVDLDQTLIHTTEQHCQQMSNKGIFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCIIDDREDVWKFAPNLITVKKYVYFQGTGDMNAP 332 HSP 2 Score: 92.8189 bits (229), Expect = 8.078e-19 Identity = 53/157 (33.76%), Postives = 85/157 (54.14%), Query Frame = 3
Query: 1008 YLTYLGEILERIHKAFYETIDAVKEKGGVAKKDGEVTRFCSFGTLNPDVRVIAPQLRRQTLTDCNLVFTGVIPTNVPPEKSRPWRTAISLGARVSNDVIEAKNESEIELHTTHVVAARHGTQKAYKASKNPNQIKLVNPNWLWAANERWKRPDEADF 1478
+L YL EIL R+H +Y D K E+ PD+R I P+L+ + L D ++F+G+ PTN P EK+R A +LGA++ ++ + + + TH++AAR GT+K +A + + +VNP+WLW+ ERW + +E F
Sbjct: 589 HLIYLEEILVRVHTDYYAKYDRYLNK--------EIEEA-------PDIRKIVPELKSKVLADVAIIFSGLHPTNFPIEKTREHYHATALGAKILTRLVLSPDAPD---RATHLIAARAGTEKVLQAQEC-GHLHVVNPDWLWSCLERWDKVEEQLF 726 The following BLAST results are available for this feature:
BLAST of TCONS_00011598 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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