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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011613 ID=TCONS_00011613|Name=TCONS_00011613|organism=Clytia hemisphaerica|type=transcript|length=734bp
ATCGAACTAAAATTACAAAGCAGCTATACCAACGAAAGGTACAACCAAGA
GCTAGATGCAATCTCCAAAATCAAAGTGAACCCCAAATTCTTCTACTCTT
ACggaaaaagattttctaaaaccAAACCTAAAGTGGGACCATTATTAGAT
CCCATCACAAATAAGCTAACAGACAATAACCTTCAGATGGCCTATATACT
TCAAGATCAATATAAATCTGTATTCACACCACCAAAATCACAATATGAAA
ATCCTGATCTCAATCCTTCGCAAGTTACGGAGAAACTTGATTATTTTGAC
CTCACAGAGGACGACTTTATTAGAGAGATACAAACCCTCTCTTCAAACTC
AGCTGCTGGCCCAGATGGCTTTCCAGCTATATTTCCACTCAAAAACAAAT
CACAGCTTGCAAAACCACTCAGATTGATATGGCAGAACATTCTTGACAAA
GGATTCACTCCAAAGATACTGAGAACAAGTTACATCAcccctattttcaa
aaaaggaaatcaAGGATTGGCTGAAAACTATCGCCCTGTCGCTCTTATAT
CACACGTCactaaagtttttgaaaagattgtaaGAAAAAATTTGCAAGAT
CATCTGGAAAGAAACAACCTCTACAACAGCAACCAACATGGATTTAGGTC
AGGAAGATCCTGCTTAAGCCAACTGCTTGCTCACACTGAACGTCTAATCC
ACTGTATTGAAAATGGCTACAATGTAGATGTCAT Run BLAST on NCBI protein sequence of TCONS_00011613-protein >TCONS_00011613-protein ID=TCONS_00011613-protein|Name=TCONS_00011613-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
IELKLQSSYTNERYNQELDAISKIKVNPKFFYSYGKRFSKTKPKVGPLLD
PITNKLTDNNLQMAYILQDQYKSVFTPPKSQYENPDLNPSQVTEKLDYFD
LTEDDFIREIQTLSSNSAAGPDGFPAIFPLKNKSQLAKPLRLIWQNILDK
GFTPKILRTSYITPIFKKGNQGLAENYRPVALISHVTKVFEKIVRKNLQD
HLERNNLYNSNQHGFRSGRSCLSQLLAHTERLIHCIENGYNVDV Run BLAST on NCBI transcript from alignment at sc0000130:173130..173863 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011613 ID=TCONS_00011613|Name=TCONS_00011613|organism=Clytia hemisphaerica|type=transcript|length=734bp|location=Sequence derived from alignment at sc0000130:173130..173863 (Clytia hemisphaerica)
ATGACATCTACATTGTAGCCATTTTCAATACAGTGGATTAGACGTTCAGT
GTGAGCAAGCAGTTGGCTTAAGCAGGATCTTCCTGACCTAAATCCATGTT
GGTTGCTGTTGTAGAGGTTGTTTCTTTCCAGATGATCTTGCAAATTTTTT
CttacaatcttttcaaaaactttagtGACGTGTGATATAAGAGCGACAGG
GCGATAGTTTTCAGCCAATCCTtgatttccttttttgaaaataggggTGA
TGTAACTTGTTCTCAGTATCTTTGGAGTGAATCCTTTGTCAAGAATGTTC
TGCCATATCAATCTGAGTGGTTTTGCAAGCTGTGATTTGTTTTTGAGTGG
AAATATAGCTGGAAAGCCATCTGGGCCAGCAGCTGAGTTTGAAGAGAGGG
TTTGTATCTCTCTAATAAAGTCGTCCTCTGTGAGGTCAAAATAATCAAGT
TTCTCCGTAACTTGCGAAGGATTGAGATCAGGATTTTCATATTGTGATTT
TGGTGGTGTGAATACAGATTTATATTGATCTTGAAGTATATAGGCCATCT
GAAGGTTATTGTCTGTTAGCTTATTTGTGATGGGATCTAATAATGGTCCC
ACTTTAGGTTTggttttagaaaatctttttccGTAAGAGTAGAAGAATTT
GGGGTTCACTTTGATTTTGGAGATTGCATCTAGCTCTTGGTTGTACCTTT
CGTTGGTATAGCTGCTTTGTAATTTTAGTTCGAT Coding sequence (CDS) from alignment at sc0000130:173130..173863 >TCONS_00011613 ID=TCONS_00011613|Name=TCONS_00011613|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at sc0000130:173130..173863 (Clytia hemisphaerica)
GACATCTACATTGTAGCCATTTTCAATACAGTGGATTAGACGTTCAGTGT
GAGCAAGCAGTTGGCTTAAGCAGGATCTTCCTGACCTAAATCCATGTTGG
TTGCTGTTGTAGAGGTTGTTTCTTTCCAGATGATCTTGCAAATTTTTTCt
tacaatcttttcaaaaactttagtGACGTGTGATATAAGAGCGACAGGGC
GATAGTTTTCAGCCAATCCTtgatttccttttttgaaaataggggTGATG
TAACTTGTTCTCAGTATCTTTGGAGTGAATCCTTTGTCAAGAATGTTCTG
CCATATCAATCTGAGTGGTTTTGCAAGCTGTGATTTGTTTTTGAGTGGAA
ATATAGCTGGAAAGCCATCTGGGCCAGCAGCTGAGTTTGAAGAGAGGGTT
TGTATCTCTCTAATAAAGTCGTCCTCTGTGAGGTCAAAATAATCAAGTTT
CTCCGTAACTTGCGAAGGATTGAGATCAGGATTTTCATATTGTGATTTTG
GTGGTGTGAATACAGATTTATATTGATCTTGAAGTATATAGGCCATCTGA
AGGTTATTGTCTGTTAGCTTATTTGTGATGGGATCTAATAATGGTCCCAC
TTTAGGTTTggttttagaaaatctttttccGTAAGAGTAGAAGAATTTGG
GGTTCACTTTGATTTTGGAGATTGCATCTAGCTCTTGGTTGTACCTTTCG
TTGGTATAGCTGCTTTGTAATTTTAGTTCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011613-exon-sc0000130-1491911889:173130..173863 | TCONS_00011613-exon-sc0000130-1491911889:173130..173863 | Clytia hemisphaerica | exon |
| TCONS_00011613-exon-sc0000130-1510915933:173130..173863 | TCONS_00011613-exon-sc0000130-1510915933:173130..173863 | Clytia hemisphaerica | exon |
| TCONS_00011613-exon-sc0000130-1575043694:173130..173863 | TCONS_00011613-exon-sc0000130-1575043694:173130..173863 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000130 | supercontig | sc0000130:173130..173863 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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