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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011660 ID=TCONS_00011660|Name=TCONS_00011660|organism=Clytia hemisphaerica|type=transcript|length=3094bpRun BLAST on NCBI protein sequence of TCONS_00011660-protein >TCONS_00011660-protein ID=TCONS_00011660-protein|Name=TCONS_00011660-protein|organism=Clytia hemisphaerica|type=polypeptide|length=685bp MFVRLLQRFNELYEYPIHSAWPWNRRGRTRYITFKKHRVKSKQTILLVLFRun BLAST on NCBI transcript from alignment at sc0000131:416718..432058+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011660 ID=TCONS_00011660|Name=TCONS_00011660|organism=Clytia hemisphaerica|type=transcript|length=15341bp|location=Sequence derived from alignment at sc0000131:416718..432058+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000131:416718..432058+ >TCONS_00011660 ID=TCONS_00011660|Name=TCONS_00011660|organism=Clytia hemisphaerica|type=CDS|length=2058bp|location=Sequence derived from alignment at sc0000131:416718..432058+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00011660 vs. Swiss-Prot (Human)
Match: GALT1 (Polypeptide N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=GALNT1 PE=1 SV=1) HSP 1 Score: 399.823 bits (1026), Expect = 2.404e-126 Identity = 226/518 (43.63%), Postives = 317/518 (61.20%), Query Frame = 2
Query: 698 GYNGEPAVLPQHLKSESMKLFGEHSFDSVLSNRISLNRHLKDNRGEKCRAKVSTYSPNLPDMSIIICFHNEALSTLLRTVHSIIRNTLPHLVTNIILIDDASTKGNLLFHIKRHKLRLRKTVWHNKIILLQNKQRQGIVRSRLNGASLARGKVLTFLDSHCEMNKGWAEPLLHRIKEDRKNVVCPVIEIIDANDFSYKATPTKEIKQVGSFTWNLFFDWKAISPEE-DKKRLDETYPLKSPTMAGGLFSMDRSYFFELGTYDDQMDIWGGENLELSFRIWMCGGNLEIIPCSRVGHVFRSKDSPYSFPGGVQKTLNKNFNRLAEVWMDXXXXXXXXXXXXXXRYTDIGDLSSRKALRHRLGCKSFDWFVKNIVPGMLGTDQNPP----ASGQIRNLGSDFCIHASRRPGVHHKAVGVAPCSSKGERNQNFVWTKNDEMVYDDQKCLDFSFSNTKRHVELWGCHGLGGNQIWKHHKESGLIIHQVSSMCLAITGQNSKSGRSDLLTVEKCNEKKNSQRW 2236
G G+P V+P+ + + ++F + F+ + S I+LNR L D R E C+ KV Y NLP S++I FHNEA STLLRTVHS+I + H++ I+L+DDAS + L ++ + +L+ V +++ +QR G++R+RL GA++++G+V+TFLD+HCE GW EPLL RIK DR+ VVCP+I++I + F Y A G F W L F W + E D+++ D T P+++PTMAGGLFS+DR YF E+GTYD MDIWGGENLE+SFRIW CGG LEI+ CS VGHVFR K +PY+FPGG + +NKN RLAEVWMDE+K +Y + D GD+SSR LRH+L CK F W+++NI P D P + G+IRN+ ++ C+ R ++ VG+ C G NQ F +T N E+ DD CLD S N V + CH L GNQ+W++ + H S+ CL + S + ++ CN + SQ+W
Sbjct: 59 GEMGKPVVIPKEDQEKMKEMFKINQFNLMASEMIALNRSLPDVRLEGCKTKV--YPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVH-----VIRMEQRSGLIRARLKGAAVSKGQVITFLDAHCECTVGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDM---TYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFR-KATPYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISPGVTK-VDYGDISSRVGLRHKLQCKPFSWYLENIYP-----DSQIPRHYFSLGEIRNVETNQCLDNMARK--ENEKVGIFNCHGMGG-NQVFSYTANKEIRTDDL-CLDVSKLNGP--VTMLKCHHLKGNQLWEYDPVKLTLQHVNSNQCL----DKATEEDSQVPSIRDCNGSR-SQQW 548 The following BLAST results are available for this feature:
BLAST of TCONS_00011660 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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