TCONS_00011661 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011661
Unique NameTCONS_00011661
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011661 ID=TCONS_00011661|Name=TCONS_00011661|organism=Clytia hemisphaerica|type=transcript|length=1412bp
ccagggggtaaattccaatgtccaggggtaattttttgtgtccacggggt
tgatttgatgtttgtccaggggtataacccgtgtccagggggttaaaaat
cgaaatgtccaggggtaattttttgtgtccacggggttgatttgatgttt
gtccaggggtataacccgtgtccagggggttaaaaatcgaaatgtccagg
ggtaattcatgaaaaaaataatatatcctccaccccccatgaacggattt
tttctagAAGAGCCCATTCTTCTCTTCTCTTCAGAATTTCGTTTGGACGA
AAAATGACGAAATGGTATATGACGATCAAAAGTGTCTCGACTTTTCCTTC
TCAAACACAAAAAGACACGTTGAATTATGGGGGTGTCATGGTCTAGGTGG
TAACCAAATATGGAAACACCATAAGGAATCGGGTTTGATAATCCATCAAG
TCTCAAGCATGTGTCTGGCAATTACTGGTCAAAATAGTAAAAGTGGAAGA
AGCGATCTTCTAACCGTGGAGAAGtgcaatgaaaagaaaaattcacaACG
ATGGAGATTTACACGTTATGCTAATGGTGGATGATTGATGGCAATATTAC
AATGTGTGGGTTGATAAGTTTGAGACACTCGAAAATATGGATATTTCAAA
ACAGATCTGGATTATTATTAGCATGGAAAATGTAAATCGTTTAAATGGTC
GGCGCCGAGGGAATGATGGAtaaaatctgaagaaaaatgATCTAACATGA
ACAGCTGGAAACACTGTTCTATTGCTAAAGACTTATTTGGAGCTTGTTTA
TCCAGTACTTtataatgggataaactttctcggggattaaatttcgcgga
tttcgcggatttggaagggcctcatccgcgaaatatttctaaacaaaact
caaaatatgtcaaataaatactttttgaatggttacttgcatcaaagagg
cgcaaataatgtgtatttcaacaaccaacatgcatgatttgacagtgaaa
gtcacaaaatcgtggaaattaagtccccgcgaaagtttatcccattaaag
tagctaTTTATTCTCATCCAgtctttaaaatttcaaactatTTTGCATTA
AGTATCAATTCACATACCTTTCAAAGAAAAGAAGAACAACATCCCATTCA
TTCCTCGACTTTCACTCTTTTCAGTTCTGGTTCGTTAGAATCGTTTAATC
CTTCAGATCCATCTATACTTTCTTTCACATCACTATCCTGGTCAATTCCC
AGATTCtcttctttgatatttttattttcattctgaTGACCATCTTCGTC
TTCTTTCAGGTTAATTTCATCATATTGTTGTTGGGTGAGAAGTTCTTTTG
CAGATCCTACTTCTTTGTTATTGCTGTGAAGAACAATTCCTATGTAACCT
TCACTACCATGC
Run BLAST on NCBI

transcript from alignment at sc0000131:430386..432058+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011661 ID=TCONS_00011661|Name=TCONS_00011661|organism=Clytia hemisphaerica|type=transcript|length=1673bp|location=Sequence derived from alignment at sc0000131:430386..432058+ (Clytia hemisphaerica)
ccagggggtaaattccaatgtccaggggtaattttttgtgtccacggggt
tgatttgatgtttgtccaggggtataacccgtgtccagggggttaaaaat
cgaaatgtccaggggtaattttttgtgtccacggggttgatttgatgttt
gtccaggggtataacccgtgtccagggggttaaaaatcgaaatgtccagg
ggtaattcatgaaaaaaataatatatcctccaccccccatgaacggattt
tttctagAAGAGCCCATTCTTCTCTTCTCTTCAGAATTTCGTTTGGACGA
AAAATGACGAAATGGTATATGACGATCAAAAGTGTCTCGACTTTTCCTTC
TCAAACACAAAAAGACACGTTGAATTATGGGGGTGTCATGGTCTAGGTGG
TAACCAAATATGGAAACACCATAAGGAATCGGtcagtaaaattgaaaaat
taaagtaGAGGTTTCAATTGTGCAGAAAAGTCAAGGACCAAATGGTTGCC
GGATATGTGCGAACCATAAGAAACAATACAGTCTttctaaaaattccaaa
attccaaaatcgaaatatgacaCACTCAAAGTGTCCAAAAAATTGGACCT
TTAAATTCTTAGAAAGATAATTTAAATGAAAGACTTTTGATCTTAACGTA
CATGATTGATgaatttctctcatttttttcaattcatttcagGGTTTGAT
AATCCATCAAGTCTCAAGCATGTGTCTGGCAATTACTGGTCAAAATAGTA
AAAGTGGAAGAAGCGATCTTCTAACCGTGGAGAAGtgcaatgaaaagaaa
aattcacaACGATGGAGATTTACACGTTATGCTAATGGTGGATGATTGAT
GGCAATATTACAATGTGTGGGTTGATAAGTTTGAGACACTCGAAAATATG
GATATTTCAAAACAGATCTGGATTATTATTAGCATGGAAAATGTAAATCG
TTTAAATGGTCGGCGCCGAGGGAATGATGGAtaaaatctgaagaaaaatg
ATCTAACATGAACAGCTGGAAACACTGTTCTATTGCTAAAGACTTATTTG
GAGCTTGTTTATCCAGTACTTtataatgggataaactttctcggggatta
aatttcgcggatttcgcggatttggaagggcctcatccgcgaaatatttc
taaacaaaactcaaaatatgtcaaataaatactttttgaatggttacttg
catcaaagaggcgcaaataatgtgtatttcaacaaccaacatgcatgatt
tgacagtgaaagtcacaaaatcgtggaaattaagtccccgcgaaagttta
tcccattaaagtagctaTTTATTCTCATCCAgtctttaaaatttcaaact
atTTTGCATTAAGTATCAATTCACATACCTTTCAAAGAAAAGAAGAACAA
CATCCCATTCATTCCTCGACTTTCACTCTTTTCAGTTCTGGTTCGTTAGA
ATCGTTTAATCCTTCAGATCCATCTATACTTTCTTTCACATCACTATCCT
GGTCAATTCCCAGATTCtcttctttgatatttttattttcattctgaTGA
CCATCTTCGTCTTCTTTCAGGTTAATTTCATCATATTGTTGTTGGGTGAG
AAGTTCTTTTGCAGATCCTACTTCTTTGTTATTGCTGTGAAGAACAATTC
CTATGTAACCTTCACTACCATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006542XLOC_006542Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011661-exon-sc0000131-1491911889:430386..430816TCONS_00011661-exon-sc0000131-1491911889:430386..430816Clytia hemisphaericaexon
TCONS_00011661-exon-sc0000131-1510915933:430386..430816TCONS_00011661-exon-sc0000131-1510915933:430386..430816Clytia hemisphaericaexon
TCONS_00011661-exon-sc0000131-1575043694:430386..430816TCONS_00011661-exon-sc0000131-1575043694:430386..430816Clytia hemisphaericaexon
TCONS_00011661-exon-sc0000131-1491911889:431078..432058TCONS_00011661-exon-sc0000131-1491911889:431078..432058Clytia hemisphaericaexon
TCONS_00011661-exon-sc0000131-1510915933:431078..432058TCONS_00011661-exon-sc0000131-1510915933:431078..432058Clytia hemisphaericaexon
TCONS_00011661-exon-sc0000131-1575043694:431078..432058TCONS_00011661-exon-sc0000131-1575043694:431078..432058Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000131supercontigsc0000131:430386..432058 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.399655	0.450518	0.678722	0.737231	2.51798	1.65474	2.68946	2.10897	1.01132	1.26011	0.171711	0.855267	0.654068	0.982289	0.8643	0.365456	0.834214	0.761564	0.813604	0.572713	1.56702	1.32783	0.81021	0.893128	1.21017	1.5474	4.09049	3.24192	0.67726	1.50854
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011661 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top