TCONS_00011665 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011665
Unique NameTCONS_00011665
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011665 ID=TCONS_00011665|Name=TCONS_00011665|organism=Clytia hemisphaerica|type=transcript|length=1448bp
gtttagtaACTAACTCGCAGCATTGAACGATCAATATTTGACCATACTAC
AACTTTAACACGACTCGACTGTCTTGACAACCTATTTTTTTCCAACGAAA
ATAGTTCGTCTTTTTTCACCGCTTTCTGTGTTTTTctctttcaaagtttg
aagaaattttcagcCGAAAGAGAAGATTTTGTCGAGTACACAAGAGGAAC
CGTTGCATTGCATATTCTTTTGAAAGTTCTTCCTTTAACTTATCAAGATG
GGAAGTTGGTTATCATTCGATCGAGACAGTGGATCTGTGGAGGAGGTCAA
AGATTATTGTAAATCCGTCATCTTCGTCAAATTCTATGGACAGACCAGCT
CCATGAAGGGTGAAACGGATAAAACGATTGACGCGATTGATGGATGTGAG
AACCTCGGATCACTCATCAAAGAACTTCACGAGGAAgtagcaaaacaaaa
atcagcaaaaaatttcgagattaCTGATGATTTTCGATTGATTTTACGAA
AGATTGCTAACTTGCGATTGTGTAATAAAGATTGCGAGACAGCAGATCAT
TGTTACGAAAGATTGTTGAAAAATGCAGATATGTTTGCGGCTATCTACAA
GAAACGAGGAAAGTTATCACAGGGACTTTCCGAAGAACACGACCACTATT
GGGGTACACGTCAACAGATGATGTGCGGAAAAACTATCGCTGATTGGTTG
GAAAAGAGGGAAAAGAAGGCCAAAAACTCCACTTATGATGCCGATTCATT
TGATCCCATCTTTGGCGTTTTGTTGAATCCAACAGGAGGTCGGGTTGGTC
CGGGAGACACAAATTGGATGCACGAGGCTTTATTTGATGATCTTGGTGCC
TTTGCATACCATTCTGCTGTTCATGATGGTTTTGGCTACCTAAAAACCAA
CCACAGTACTGGACCTGGGTACAATTACCTCAATAAGGGTCTCTTTGGTG
ACAGCAGTCCTTTGGGAGGACAAATCAGTGGGATTTCATTCTGGGAATCA
ACATTAGATGATGAAAAACCTGAAGATGCACCActtgacaaattcaattt
caaataattttatgGGGGGTAGATAATTCAAGCTCAGTGCTATACTATGG
AAGTCAATTTTCCAATTGGGAGAAGGTTGCGttgaaaagtaacaaaattt
tgaccacatTCACCTGGTATTCTCTTGTATGTAAATATCAAATTAcagaa
tatttatttttaatattattcaTTCTTAGAAATATACATTTAGAGACATG
TTTTACATTTTGTAGAGAATTTATTCCATTTTATCATCTAGAATTATTTC
ATATACATTGGAAATATTTTCTGAATTGCTTTTGTCCGCTTCTTTAGAAA
TTACATAAATCAAGATTCCCTTAAatatttttagtaatttttataTTCTG
TGCTTGATGACGTTGATGACgtcaattgaaaaaaaatttaaaatcaac
Run BLAST on NCBI

transcript from alignment at sc0000131:482149..489337+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011665 ID=TCONS_00011665|Name=TCONS_00011665|organism=Clytia hemisphaerica|type=transcript|length=7189bp|location=Sequence derived from alignment at sc0000131:482149..489337+ (Clytia hemisphaerica)
gtttagtaACTAACTCGCAGCATTGAACGATCAATATTTGACCATACTAC
AACTTTAACACGACTCGACTGTCTTGACAACCTATTTTTTTCCAACGAAA
ATAGTTCGTCTTTTTTCACCGCTTTCTGTGTTTTTctctttcaaagtttg
aagaaattttcagcCGAAAGAGAAGATTTTGTCGAGTACACAAGAGGAAC
CGTTGCATTGCATATTCTTTTGAAGTAAGTCACCAAATTATTAGTTTTCA
GAAGTTTAAATCTCAGAATTGACCTTTTAAAGTCTATAAATACTGCGCTA
TAAAGGATAGACCTTCACCTCGATGTTGTTTGCAATTCAGGCAACACCAT
TTAGAAAGTTTAGCGGAGATAACTCAAGAAGAGTAGACTCGAAGAGTTTA
GCGGTGATAACATTCTTAGAGGGATATCCAAAAATTCTGCTTTAAAACTA
AAATGCAAAGAGACATAACGTCATAACCGTAGCATAGGGCAATCATGAAA
CCGACAGTCATTTTTGAAGAAtagaatttttactttttgaaaataatagt
tTTCGCTGTTGAGGCACCTTATTCTACGTACGAGAAACGAAACACGGAAT
TCCGGTATTTTGGAGAacgaaaaatcacaactttgaTAAAAATTGTGAGA
AACAataaatcaatttcaaaataacCTATTGAAAGAATGATTTAGGCTTC
TTTTAAGTGCTTGAATTAAATTATTGCTTTATTTTCACAATTGATATCAA
ACTTGTGATTTTCGTTACCAAAATTCCATGTGTCAAGTGCTTCAGGAGCC
TCCGATAGAAATACTTCAAAAATCTGCCTCTTCATTTATCAACCTAGAAT
GCCATGGTAAaacactctctataattcgattaTCTCTGTCATTCGAACAA
ACAACAAACTTTACTTCCCGTTGGagttcgaattagtgagagttAACAGT
GCCACTCAATagttcttttctgtttttgtgactttttagAGTTCTTCCTT
TAACTTATCAAGATGGGAAGTTGGTTATCATTCGATCGAGACAGTGGATC
TGTGGAGGAGGTCAAAGATTATTGTAAATCCGTCATCTTCGTCAAATTCT
ATGGACAGACCAGCTCCATGAAGGTTTGCACCACCAAGTGTTTGGAAATA
CACTCTTCTTATAAGTCTGTCTCAGTATAATCTGCAGCGGAAACAAAAAA
GGCTGGTGATTTTCGTAAAATTAGAATTATGAACCAGTCTAAAATTGCTA
TCTAATTTGAATATTCTATCAAAACTTTCACTTTTCGTTGCCGCTGCAGG
TTGTATCGAGAAAGACTTTAGATAATTCCAAAATCAATGAGCCTTCTTTT
CAAACGGAAGCTAACTTCAAACAATATTTATATACTCAATATATATTTTC
AGAAGACCGTTATCGATTTTGATACTAAATATGTTTGTCTAATGACGTTT
AAAGTATTTTAGCAACAAGACAAGACTTTAAACGAGAGCCGTAATCAGTA
GCGTGGTCGAAAAAACACTGGGGagtcaaaatagaaaaatttgcaatttg
gTGCCCCTTTTCTAGGACAAATTGTGGGAAATGACGCGAGCGAAACGAGC
GATCTTTcgaaatttttcctttttttNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNacatatactaattcgtgagtttcca
caaaaaaaagttagttctaagatgtgtgtcacgaaaatcgttttctagcc
acttttttcgatctcagcagcgggactatacTGTATATCTTGTTCATTGA
AAGGGTGAAACGGATAAAACGATTGACGCGATTGATGGATGTGAGAACCT
CGGATCACTCATCAAAGAACTTCACGAGGAAgtagcaaaacaaaaatcag
caaaaaatttcgagattaCTGATGATTTTCGATTGATTTTACGAAAGATT
GCTAACTTGCGATTGTGTAATAAAGATTGCGAGACAGCAGATCATTGTTA
CGAAAGATTGTTGAAAAATGCAGATATGTTTGCGGCTATCTACAAGAAAC
GAGGAAGTAAGTACGGGTTGTTTGGTGCCTTGATGATTCAGTTACAACCA
AAGAAACCCGGTTTGGAGCCAAAAGGCTTACAATCTGTACTTTTTTTCTG
ACCATATGATCAATAGCCATTGCTGGACCGTGAAGTTTAAGATTTATTAC
GAAAATATTGGTTTTAATCTCGCATAGTCTGTCTGAATGGTATTAACTTG
AAAGGCTATGATCCTAATTCTCTAAAATCGGTGTACTATACAAttagtgc
cataacatattggcaattttggctattttaccattttttgaaaattgaag
ttcgagcgagagtgtcaatttcgggccttcaactcGATTTTATCGAATAT
TTCGATCTTGGAGgtatttattggtttctagaatatattatttcaagccc
taccggaccatttttgaagttttggatcctcagatcctaaggtcctccta
agtcttaagtctagcgttaaaactcagagttaaactCTACCTTTCCAACC
TAATTTGGAGCACCTacaaattgtttgtggttataaaatttcgtggggaa
tttcccttttgtgccaagtattttggaaaCGATTGTAGTTTACAGCGACA
TCAAATTGACGATGACGATATTGAAAGCAATATATAGAAAGTAGTAGATG
ATTCTATCAAAGAGTGATCGATGACCAGGACTAGAGCTTCATAATgtgta
caagaaaaaacaaaattgaattaTGGTATTGAAAGCATCACAATCATTTC
TTTTCTCATATTTGACTGTTTGCCATGATATGGCCTAGCTTCATATGTAA
TTGTCATAGCTTCTTGGAAAGTCGATACTTTACGTAATAGCCCAGTAATC
AAGGACTTTTAACTCCTGGCTTGTACCCATGACGGCTCAGACTAGTCGGT
CTTTTTCTCCATATGCAGGTCTATTTATCCTCTTCTCGTCCACTTATGAT
TaaattttaacatatttttctACAGAGTTATCACAGGGACTTTCCGAAGA
ACACGACCACTATTGGGGTACACGTCAACAGATGATGTGCGGAAAAACTA
TCGCTGATTGGTTGGAAAAGAGGGAAAAGAAGGCCAAAAACTCCACTTAT
GATGCCGATTCATTTGATCCCATCTTTGGCGTTTTGTTGAATCCAACAGG
AGGTAAGACTATAGCgatgatatttttggaaatatggAGAGTGGTCAATG
TTTTGGTGGCGGTCGGCAGACCCTTAACCCTAtacatactaggcttttag
ggctGGTTCATTACAACCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTCTTTG
GAGGCGTTCCCTGCTCAGGGCTgactaataaaataataaaaataataaaa
atttcctAAACTTGACACTTCTTCCATCTTTGCTTGGGGGGATTGGAGAT
TGGTCGGGGGGTAGCCACTCTTCAGGACTGGTCTTGTACTTCTCAGCTGT
TGGTGGAGGGATCATCTTCTGCTTTCCTTGGGATACTTTCTGGGGTGATT
ATGGTGGCAGCGGAACTAGCAGGTTCCACTAATACTTGTGGCTTGATGAT
AGTGGATGACTGGTAGTGGTGTCATCCCCAGCTGCCTGTGGTGGTGGTTT
AGCAGGCGTTAAAAGttcatttgtttgttttgagGTTATTTGGTGTGTCT
TCTCAACCACCAGTCTCTTTGTTTCTCCTTTGGTGGTCATATTTAGTAGG
TCAGCAGACTCTCTCTCCTTTAAAAATGAAACGATTTTTTATAGAACTTT
CTACACCTTTAAATTTCGACCCGGTAAGAAGAGAACTCGAATTTTAGACC
TCATTCAGATGAAAGTTTaacaaggaaaatttttaagaaagaaagcaaCT
TTTGTTACAGTGAAAtctgtttctaaaaaaactgaaaattgattGTGATT
TTAGGGATAAAAAAAAGACAGGCAAGGCGGAACGATGCCTGCGGTACTTT
TAGAATACTTACGGAGTTTGCGTAATTTACCTTGTACGTCATTGcttctt
ttttcataaaaaaattcctgAAAGATACTGAGaaaaggtcaaatttaaaa
atctcatACGACACTCAAAATCAGCAACTGCATGAGCGAATTCCTATCGA
ATTTCGCAACCCACGCGATTAGATCAGCAGCGTTTATCTAGAATTAAACT
CTGATCTAATATACAAACATCGTTCTTTTTTGTTTAGACAGGTGTTTGTT
CTGTTCGTTTACAAACACCCGTAGTCTAGCGGCTTCAATTTTCGTTTATC
AAACAATCTCTACACACTTGCTGcattaactgaaaaaaaattctcatttt
ctatttttgcgaccaaaagttcaaaaaaaacaaaaaaaattgaaaaaact
aaaaaagaaaaaaaaatatctgaaacTTTTGGCCCATACTTCGAGTTTAA
AACCTGGACGCTTGGGTCCCGAAGTACATTGTCCACTCCCTATAGCGgaa
tgaaaatctcaatattCTCAAATCACATCTCCGTGAAATCATTTACTCTA
GATGTCTCAATACATCAGTTACTACAGGATCTCAATATCCTCAAATTATA
TCTCAATAAAACCGTAAACTCTGAAAGATGTCTCAATACATCAATTTCTC
ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTAGGGATATGCAGTAAAAGATAACCTTCCTTACAGGTCCATGCG
ATGGAATTCTACAGAGTATCTGGAACCCCACCCCAAGAAAGGAAGAAATC
CTATAGAACCCTTTCCCTAGACTCGGGAGTGATTTCTTAATTCTTTAGCT
TCGGGTGAAAAGAAAAGTAATCATTAGCCAGTAAGGCtttaagaaacaaa
agaaagaccaCTGTTTAATTTCGTTGGGCGCCAATGTACTGGCGGCTTAC
CCGGGTGCTGCCTAGCAGACGAATAAGACGCAGCGAGTGAGTGAGTCTAG
ACTACGAAAGGGACGGGCTAGAGGAACCTAGGGGAGTAGAACCTAATCCT
ATTTGCAGACAGGAACGGGAGACTATGCAGTTACAATAAACTAATATTTA
ATAATGACAACGCTCTACAATCGTGTTATAAATAAGAAAAGGATACTTAC
AAACCTATGTCCTGAGCAGGTCCGCCGCCGATCGCTGCCGAAACAACACT
AAAGTTTAGGAGGGCTGGACAGCAATTNTAAGTTGCTGCCCAGTGGAGCG
TGGAAGGCGTAGTTGGGCGTTAGAAGGGCGCTAGATACGATCAGTAAAGG
TATAGCCGAAGGAACTTTTTAGTACATATTCCTACCTCACTGTACAGTTT
AATAGGACCTAATTTGGATTTCCAGCGTATGTTCTATTCATATCGTATGA
AAAGTCCAATTTTCTACCAAACCCTCTCCGTTCATTTATGCTCGGTATAT
CTCAAAATGAACTCTCATAATTTCTGTAGGTCGGGTTGGTCCGGGAGACA
CAAATTGGATGCACGAGGCTTTATTTGATGATCTTGGTGCCTTTGCATAC
CATTCTGCTGTTCATGATGGTTTTGGCTACCTAAAAACCAACCACAGTAC
TGGACCTGGGTACAATTACCTCAATAAGGGTCTCTTTGGTGACAGCAGTC
CTTTGGGAGGACAAATCAGTGGGATTTCATTCTGGGAATCAACATTAGAT
GATGAAAAACCTGAAGATGCACCActtgacaaattcaatttcaaataatt
ttatgGGGGGTAGATAATTCAAGCTCAGTGCTATACTATGGAAGTCAATT
TTCCAATTGGGAGAAGGTTGCGttgaaaagtaacaaaattttgaccacat
TCACCTGGTATTCTCTTGTATGTAAATATCAAATTAcagaatatttattt
ttaatattattcaTTCTTAGAAATATACATTTAGAGACATGTTTTACATT
TTGTAGAGAATTTATTCCATTTTATCATCTAGAATTATTTCATATACATT
GGAAATATTTTCTGAATTGCTTTTGTCCGCTTCTTTAGAAATTACATAAA
TCAAGATTCCCTTAAatatttttagtaatttttataTTCTGTGCTTGATG
ACGTTGATGACgtcaattgaaaaaaaatttaaaatcaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006545XLOC_006545Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011665-exon-sc0000131-1491911889:482149..482372TCONS_00011665-exon-sc0000131-1491911889:482149..482372Clytia hemisphaericaexon
TCONS_00011665-exon-sc0000131-1510915933:482149..482372TCONS_00011665-exon-sc0000131-1510915933:482149..482372Clytia hemisphaericaexon
TCONS_00011665-exon-sc0000131-1575043694:482149..482372TCONS_00011665-exon-sc0000131-1575043694:482149..482372Clytia hemisphaericaexon
TCONS_00011665-exon-sc0000131-1491911889:483138..483271TCONS_00011665-exon-sc0000131-1491911889:483138..483271Clytia hemisphaericaexon
TCONS_00011665-exon-sc0000131-1510915933:483138..483271TCONS_00011665-exon-sc0000131-1510915933:483138..483271Clytia hemisphaericaexon
TCONS_00011665-exon-sc0000131-1575043694:483138..483271TCONS_00011665-exon-sc0000131-1575043694:483138..483271Clytia hemisphaericaexon
TCONS_00011665-exon-sc0000131-1491911889:484052..484304TCONS_00011665-exon-sc0000131-1491911889:484052..484304Clytia hemisphaericaexon
TCONS_00011665-exon-sc0000131-1510915933:484052..484304TCONS_00011665-exon-sc0000131-1510915933:484052..484304Clytia hemisphaericaexon
TCONS_00011665-exon-sc0000131-1575043694:484052..484304TCONS_00011665-exon-sc0000131-1575043694:484052..484304Clytia hemisphaericaexon
TCONS_00011665-exon-sc0000131-1491911889:485274..485450TCONS_00011665-exon-sc0000131-1491911889:485274..485450Clytia hemisphaericaexon
TCONS_00011665-exon-sc0000131-1510915933:485274..485450TCONS_00011665-exon-sc0000131-1510915933:485274..485450Clytia hemisphaericaexon
TCONS_00011665-exon-sc0000131-1575043694:485274..485450TCONS_00011665-exon-sc0000131-1575043694:485274..485450Clytia hemisphaericaexon
TCONS_00011665-exon-sc0000131-1491911889:488678..489337TCONS_00011665-exon-sc0000131-1491911889:488678..489337Clytia hemisphaericaexon
TCONS_00011665-exon-sc0000131-1510915933:488678..489337TCONS_00011665-exon-sc0000131-1510915933:488678..489337Clytia hemisphaericaexon
TCONS_00011665-exon-sc0000131-1575043694:488678..489337TCONS_00011665-exon-sc0000131-1575043694:488678..489337Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000131supercontigsc0000131:482149..489337 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.126876	0.270304	0	7.5185	8.68155	45.866	21.5221	44.2991	54.8022	10.3996	16.6584	17.8081	14.0804	3.47947	4.27754	4.76475	5.04795	0	0.162046	1.05053	0.447306	0.418584	0.299517	0	0	0.158909	0.064761
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011665 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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