TCONS_00011682 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00011682
Unique Name	TCONS_00011682
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	918

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000131:416789..423563-

transcript sequence

>TCONS_00011682 ID=TCONS_00011682|Name=TCONS_00011682|organism=Clytia hemisphaerica|type=transcript|length=918bp
CGTGAGCATGGAATGATTTCAAGATTGCCACCACACATCCAGATCTAAAG
GAAAAGAAAACCAAGAATCGTATATCCATTTGATCATCGTACGTGCCAAG
CTCGAAGAAGTATGATCGATCCATGCTGAATAAACCACCTGCCATCGTTG
GTGACCTGAAGGAGTGATTGCGAAGATGACGATTCAAGGATATCCGATTG
CTTAAAACGGAATCGAAAGAATGCTCTCCAAACAGTTTCATGGATTCCGA
CTTCAAATGTTGCGGTAACACAGCTGGCTCTCCGTTATAACCGAGTGATG
GGATTACAAGCTCTGGATAAACCTCTAATGACAGAATGGATTGCTCACTG
TCCTTTAATTTAGCATCTTGCTCGTTGGGATTGTCGGAGAATTTTGACGA
CGCTTGTGTGTTCGCGTATACAGGATCAAGAGAAGATGGTTTCGTTGGAA
AATTTGTAGGAGCTGGAATTCCGATTCGGGAATGTCGAAGAACGGGAGGT
GTAAATCTTCCTAACAAATCTGCCCGTTTATTGACGTGTGCAGTATTCTC
GTGTTCAAAGATTAGCAAAGCAGAGCCTCTGCTATGCAATAGATAAAGTA
CATTGAAGGAGAGCCACCATAGACTTGTCAGAAATAATACGAGAagaatg
gtttgttttgatttcacacGATGCTTCTTAAAAGTTATGTATCTCGTTCG
TCCACGCCTATTCCATGGCCAAGCACTGTGAATTGGATATTCATACAATT
CATTGAAACGTTGTAATAATCTTACGAACATTCCTTTGATATTTTATTAT
gacaaatttttactttaataaCAATTCCATTTTTTACATTATACCGGTGG
ATTAAAGATTAGCACAGTCTAAATTCAAAGTTTAACCGTACTTTCATATC
ATAAAATAcattataccg

Run BLAST on NCBI

transcript from alignment at sc0000131:416789..423563-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00011682 ID=TCONS_00011682|Name=TCONS_00011682|organism=Clytia hemisphaerica|type=transcript|length=6775bp|location=Sequence derived from alignment at sc0000131:416789..423563- (Clytia hemisphaerica)
CGTGAGCATGGAATGATTTCAAGATTGCCACCACACATCCAGATCTAAAG
GAAAAGAAAACCAAGAATCGTGTAAGCGGATAATACTTCATAATTTATTT
CTTCTGGAGCGTCCGCCGAAACTTCAAACTCTACATTTAAAGTGAGGTTG
AGAACCGCAATCTTACGAGGAAGGTTGAAGAGCTAGGATATTCTGTCTCG
CCCAATCAATTCAGGCTGGAATATAATTTTTTTATCTCAAAAAATACGTA
ATAGCTATAATTTTCTGTACAATATTTTCCAAGCCTTTAAGCGAAGAAAA
TATACAGAAAATCCGGAACGAGTGAAATATTTCCATTTTGTACGAGCAAA
TATCTGATAACTGGTTTATCGGTGACCCAAAAAATGCACTTTTTGTGTTG
GAAAAAAAGCGCAGGGCAGTTTTGTATCAAAGTGACGTTAGATTGCTTCT
ACCGCTACAATGTAACAACATCTTTTCCTTTCGTCAATTTATATTTTGCA
CATGTATATACAAGATATATTTTGTACTCTTTTTAACCAATCAGATTACC
GATATCTTTTGGATCGCCGATAATTCTAAGTATTTACCTAGTTTAAAAAA
AAGCGAAACTACATCAGCCAAAATCTAATATTTCTAGAGGCTATGCTAGG
TATACTTAGAGATTGTTAAACATAGGGATAACTAATTCATAGTTGCACAG
TACTATCTTTGAGTCCCAAATTCAAATCTAAGTAAACCATACTGTAAAAT
AGTCGAACGTGCGCAACGCACTGGGCTCAACTTCAGTGGCTTCAAATCAT
TCATAGGCCCAATTGTAGACCTCCAGATATTCACCCAATGAACAAGTGTG
CCAAATTTCAACCAAATCCGATCATTTTGGAGGCCTGTAGACTGCTCCAA
AGCTTTAGCCTCGTTTTGGCAAAAAAACTCGTTCCCAGGCCTCAAAAATC
AAAATTTTTGAAAAATGCAAAAAGCAACCCCAGATATTCACCCAAGGAAC
AAGTGTGCAAAATTTCAGCCAAATCCGACCATTTTTGAAGTCTCCAGGCT
GCCCCAAAGTTTTAGCCTCGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAGTCTCCAGGCTGCCCCAAAGTTTTGGGACATACACA
CACACAGACACACACACAGACACACATTCTCAGATTCTAACTCAACTGAA
GTTGAGAATACTAACATCTAAGTAAAAAAAGTTTACAGTATGAATACTAA
AGCTAAGTTTTTTAAGCTGTCGTTCTAGTTTAAGTGTTGCTTGATAAGAA
TTAAAATGTACATACGTACCCTAAAAGACAATTCTAAATTTTCACCACCC
CAGATATCCATTTGATCATCGTACGTGCCAAGCTCGAAGAAGTATGATCG
ATCCATGCTGAATAAACCACCTGCCATCGTTGGTGACCTGAAGGAGTGAT
TGCGAAGGTTAGTTGTGCATACTATGATGTACCTATCAGACCCTCAAAAG
CGTGAGGAAATTGGGTTCAACAAGAATGATCGACGTCAAATAGTCGTATT
GATACTCTCGATGACATAACCTTTTGATATCTCGACCTAGGCCTTTTGTT
GCGCTTGGGGTTGAAGTATTTTTGAGCTGAAATGCCTTGAAATTGAGGTG
CTGTATATGCGTAGAAAATGGCTTGTGTTTAAGATTTTCAATCTAGAAAG
TGTTATGCTTGTAAATGAAGAAAAACTTGCGATATATTGTCCATAAAAAT
GCAATTTATTATGTTTTTGGCTGTCTTTGTTTTATTCGTTTTGTGAATCT
GAACGGTTGATAACTTACTTTAGAGGATAGGTTTCGTCCAGTCTTTTCTT
GTCTTCTTCCGGAGAAATAGCTTTCCAATCGAAAAACAAATTCCAAGTGA
AGCTGCCGACCTGTTTAATCTCCTTTGTTGGTGTGGCTTTGTATGAGAAA
TCATTCGCATCTATAATCTAAATGTGATGTAGAACACGCCTGGTCACACT
ATGTTATTTCGAATAAACGCCCCCTTCTTGTACACGCCCCCTCGAATAAA
CATCCCTCCTTCAAGGTAAAATTTTCGATGAACACCCCCCCCCCCTTCAA
ATAAACGAGAAGTATCACATAAAGAAAAATTATATATATGATAGTAATTG
TATGATAGTAATTGTATTCTTTTCGAATTAAGTTTTACCCATTCCTACAT
CCCAAAATGACATATTTGAAAAACCTTATAAATTATTAACGCCCCCTTAT
TTTAAACGCCCCTCCTAAAATAAATCCAAAAAATTTAATAATTATTCGAA
GTAATACGATAACTGAATGTTTGAATGGCTAGAAATTCATTGGCTGTATT
TGAATCCGTATGGGACCTTATTCTTCTGGAAAAATGTGTGAATTCTTGCT
GCCTCTTGACATTGACATACATCTCTTCAACGTACATCTAAAATAGATGA
ACGTTGGAAAGATTTTCTCAATGGCAGCTTGATCTTTTCACTTACCTCAA
TTACCGGGCAAACAACATTTTTTCTGTCCTCTTTGATTCGATGTAACAAT
GGTTCAGCCCAGCCTTTATTCATTTCACAATGCGAATCGAGAAAAGTCAA
CACTTTTCCACGGGCTAACGAAGCACCATTCAGCCGTGACCGAACAATCC
CTTGACGCTGTTTGTTTTGTAACAGTATTATTTTGTTGTGCCACACTGTC
TTTCTGAGTCTTAGTTTGTGTCGCTTGATGTGAAATAGTAAGTTCCCTAT
CAAAAACAAAGAAGAAGTTGAACGCCTTTTAAATCTATCAATAACGGTTG
CGCTATCATTTTATCAAAGGCTTAGTATGATACATTTTTTAAGATAAAGA
TTGCTACAAAATTGTAAATTGATAACTTTGCTAAATCTGAATAAAGCAAC
ATTAAAAGTACGACCGTATCGATAAGTGATCGACTTAAAGTAGTGGATGG
CCACTCAGAACAGAGTTCTAGTTCCCAAATTCTTGCTGAATTCAGGTTCA
AAGGAGTTAGAACTGATTAGCCTTCGATACAGGGGTGTAAGTTAGTACAA
AAACTACTAGTCTCACCTTTGGTAGAAGCGTCATCAATGAGAATAATGTT
TGTGACCAAATGTGGTAGAGTGTTTCTGATGATACTGTGAACAGTGCGAA
GGAGGGTAGAGAGTGCTTCATTATGGAAACATATGATGATACTCATGTCA
GGAAGGTTTGGTGAATATGTGGATACTTTGGCTCTGCATCTGCAAAGAGA
GGAAGGAGATGTGTATTGGTGACAAGGGGGGGTTAAAGACCGTGACTTTT
TCGATGGAAAAACTGCAACTTTCATTAATTTTTCAATAGATTGCAGCTTT
TCACAATGACGTCACTCTTAGTTTTTTGGCTTCTCCTATATCATGATTAG
AGGTGTGTCTTACCAAATTGTCAGTTAAGATGATGTTCAGGAACGAGTAA
AACATGGTTTCAGCCCACTTTTCAGGTGCCCCCATTGAGCATGGTGCCCC
CAGCAATCTAGGTCCCCTTGAAAAATTGCTTTGAGTTAGGTACCCCTATT
CAACAGATAATTTCTTTGAATTGACACTTTTTGTTCTTTTGTCATTCCTA
AAATCATGCTCACGCATGAACGCCTGCTAATAAGCTTTGTTGTTATGCTA
TAAAGATGGCGGCTGTAAATCAAAACAATCACATTATAAAAATATAGCAA
AAGATGGCGTGATGGGAAACTAGGTGCTGGGGTAAAAAAATTCAATAATT
TGAAATATTTTGAAATATTAGATTTGGAAAATATAACCAGCCCCCAGAGC
CTCCATCAAGACAGCTAGGTACCCTTAATGAATAGGTAACCCCAAAGAAT
TGCAAGGCATTAGCCCCACTAACCTGGCCTAGGTGCCCTTCAGATTTCTG
GGGGGGGGGGCTGATACCATGGTAAAAGCTTTCATAGTTGGGGATAATTC
TATTGTATGTGGTAATGGCATTTAATGGTAGCCTTTACTCTTAGCTAGAG
ATCCTTCATATTTTGTCAAAGAATTTACGCAATGCCTATTTGAATGCTAT
AATGATGCTGCGGATGTATCAATGGAAACAATTATGAATTTTAAGTTAGT
CCGGAAATTGACTGGATTTATTTGCAATAACAATTAATTCAGTTAGAGAA
AATTAGCTTGGTCTGCTAATTTTATTTATTCTGCATTACCGTAACCTGAT
TACTTCTGAGAAAACCCATTAGCATATGTTTTGGCATTCAAATAATATTT
GTATACTTACCTGATGAATTTTTGTCAATTCTGCTAAAAAATTTTTGGCT
TTTTAGCGGTAATTGTTTTCCACAAGATCTTTTAACCTATCGACAAAAAA
CCTTTAGAGCTATTTCGTAAGTTTTACGTGATTTTAAATTTGCGTTGTCA
TAAGCGACATAACCTTGACGTCAGCACTTTAGATGGCTATTTTATCTATG
AAAACACGTATAACCGTTGCTATGTATTCTCTTTTAAACGCAAGCCACGA
ATTTTTGATTGATTTAAATTTTCTTCCGTTAACCAAACAAAGCTTAACCA
TTTATCATTTTCAATTTTTTCTCGATAACCCTCTTGAAATCCGTTTAAAA
GATTAGTGAGTTGGTTTTTTTATCATCGAGACTACGAACTAAAGAAGATT
GTTATTGTTGGTTGATTTAGTCTCCTCAAGTTCATATGTCTCCTAAAAAC
CGTTAACAAAAAAAAACAACTGAAAAACAGTCAAAATAAAGTGCTTGATC
GGCGACTCTACTCTTCGAAAAACTTTGCTGAGTATTATCCTTATTTAAAG
ATTTTGATCGCGAAAAGGCCTTTTCAACGATCATCTCAAGAAATTTGTCT
CGTTTTCGAAATAGCGCTTCTTTTTAATTTAGTTTTTCAAAGTCTCAAAT
GAAATTGTCTTTTTGTTTCAAAACGAGGCAATTCTCGTAACTCGTAATAC
ACTTTGTCAAAAGTGAGGCCTTTATGAAAGCATTTAAATGAAAGTAAAGA
TGCCATAAATTGCTACTTGATGTTCATATACACACCCTTATATGGATTTC
TAGGCTTACTTCTCTCCTCTGTTATCTTTTAGATGACGATTCAAGGATAT
CCGATTGCTTAAAACGGAATCGAAAGAATGCTCTCCAAACAGTTTCATGG
ATTCCGACTTCAAATGTTGCGGTAACACAGCTGGCTCTCCGTTATAACCG
AGTGATGGGATTACAAGCTCTGGATAAACCTCTAATGACAGAATGGATTG
CTCACTGTCCTTTAATTTAGCATCTTGCTCGTTGGGATTGTCGGAGAATT
TTGACGACGCTTGTGTGTTCGCGTATACAGGATCAAGAGAAGATGGTTTC
GTTGGAAAATTTGTAGGAGCTGGAATTCCGATTCGGGAATGTCGAAGAAC
GGGAGGTGTAAATCTTCCTAACAAATCTGCCCGTTTATTGACGTGTGCAG
TATTCTCGTGTTCAAAGATTAGCAAAGCAGAGCCTCTGCTATGCAATAGA
TAAAGTACATTGAAGGAGAGCCACCATAGACTTGTCAGAAATAATACGAG
AAGAATGGTTTGTTTTGATTTCACACGATGCTTCTTAAAAGTTATGTATC
TCGTTCGTCCACGCCTATTCCATGGCCAAGCACTGTGAATTGGATATTCA
TACAATTCATTGAAACGTTGTAATAATCTTACGAACATTCCTTTGATATT
TTATTATGACAAATTTTTACTTTAATAACAATTCCATTTTTTACATTATA
CCGGTGGATTAAAGATTAGCACAGTCTAAATTCAAAGTTTAACCGTACTT
TCATATCATAAAATACATTATACCG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006555	XLOC_006555	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00011682-exon-sc0000131-1575043694:423493..423563	TCONS_00011682-exon-sc0000131-1575043694:423493..423563	Clytia hemisphaerica	exon
TCONS_00011682-exon-sc0000131-1575043694:421157..421260	TCONS_00011682-exon-sc0000131-1575043694:421157..421260	Clytia hemisphaerica	exon
TCONS_00011682-exon-sc0000131-1575043694:416789..417531	TCONS_00011682-exon-sc0000131-1575043694:416789..417531	Clytia hemisphaerica	exon
TCONS_00011682-exon-sc0000131-1510915933:423493..423563	TCONS_00011682-exon-sc0000131-1510915933:423493..423563	Clytia hemisphaerica	exon
TCONS_00011682-exon-sc0000131-1510915933:421157..421260	TCONS_00011682-exon-sc0000131-1510915933:421157..421260	Clytia hemisphaerica	exon
TCONS_00011682-exon-sc0000131-1510915933:416789..417531	TCONS_00011682-exon-sc0000131-1510915933:416789..417531	Clytia hemisphaerica	exon
TCONS_00011682-exon-sc0000131-1491911889:423493..423563	TCONS_00011682-exon-sc0000131-1491911889:423493..423563	Clytia hemisphaerica	exon
TCONS_00011682-exon-sc0000131-1491911889:421157..421260	TCONS_00011682-exon-sc0000131-1491911889:421157..421260	Clytia hemisphaerica	exon
TCONS_00011682-exon-sc0000131-1491911889:416789..417531	TCONS_00011682-exon-sc0000131-1491911889:416789..417531	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000131	supercontig	sc0000131:416789..423563 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.62036	1.07992	0.4403	0	0	0.254099	0.261068	0.277001	3.98188	0.000552416	2.1451	1.00439	0	0	1.90776	0.772137	0.735625	2.77467	0.628507	0	1.03581	0.125921	0.831523	0.273998	0.525773	0.194727	3.70135	6.23053	2.39409	5.6333

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR029044	Nucleotide-diphossugar_trans

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00011682 vs. Swiss-Prot (Human)

BLAST of TCONS_00011682 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00011682 (transcript) - C. hemisphaerica