TCONS_00011687 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011687
Unique NameTCONS_00011687
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1064

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011687 ID=TCONS_00011687|Name=TCONS_00011687|organism=Clytia hemisphaerica|type=transcript|length=1064bp
AGAAATTGATGTATTGAGACATCTTTCAGAGTTTACGGTTTTATTGAGAT
ATAATTTGAGGATATTGAGATCCTGTAGTAACTGATGTATTGAGACATCT
AGAGTAAATGATTTCACGGAGATGTGATTTGAGaatattgagattttcat
tcCGCTATAGGGAGTGGACAATGTACTTCGGGACCCAAGCGTCCAGGTTT
TAAACTCGAAGTATGGGCCAAAAgtttcagatatttttttttctttttta
gttttttcaattttttttgttttttttgaacttttggtcgcaaaaataga
aaatgagaattttttttcagttaatgCAGCAAGTGTGTAGAGATTGTTTG
ATAAACGAAAATTGAAGCCGCTAGACTACGGGTGTTTGTAAACGAACAGA
ACAAACACCTGTCTAAACAAAAAAGAACGATGTTTGTATATTAGATCAGA
GTTTAATTCTAGATAAACGCTGCTGATCTAATCGCGTGGGTTGCGAAATT
CGATAGGAATTCGCTCATGCAGTTGCTGATTTTGAGTGTCGTatgagatt
tttaaatttgaccttttCTCAGTATCTTTcaggaatttttttatgaaaaa
agaagCAATGACGTACAAGGTAAATTACGCAAACTCCGAGAGAGAGTCTG
CTGACCTACTAAATATGACCACCAAAGGAGAAACAAAGAGACTGGTGGTT
GAGAAGACACACCAAATAACctcaaaacaaacaaatgaaCTTTTAACGCC
TGCTAAACCACCACCACAGGCAGCTGGGGATGACACCACTACCAGTCATC
CACTATCATCAAGCCACAAGTATTAGTGGAACCTGCTAGTTCCGCTGCCA
CCATAATCACCCCAGAAAGTATCCCAAGGAAAGCAGAAGATGATCCCTCC
ACCAACAGCTGAGAAGTACAAGACCAGTCCTGAAGAGTGGCTACCCCCCG
ACCAATCTCCAATCCCCCCAAGCAAAGATGGAAGAAGTGTCAAGTTTagg
aaatttttattatttttattattttattagtcAGCCCTGAGCAGGGAACG
CCTCCAAAGAAAAC
Run BLAST on NCBI

transcript from alignment at sc0000131:486139..487447-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011687 ID=TCONS_00011687|Name=TCONS_00011687|organism=Clytia hemisphaerica|type=transcript|length=1309bp|location=Sequence derived from alignment at sc0000131:486139..487447- (Clytia hemisphaerica)
AGAAATTGATGTATTGAGACATCTTTCAGAGTTTACGGTTTTATTGAGAT
ATAATTTGAGGATATTGAGATCCTGTAGTAACTGATGTATTGAGACATCT
AGAGTAAATGATTTCACGGAGATGTGATTTGAGAATATTGAGATTTTCAT
TCCGCTATAGGGAGTGGACAATGTACTTCGGGACCCAAGCGTCCAGGTTT
TAAACTCGAAGTATGGGCCAAAAGTTTCAGATATTTTTTTTTCTTTTTTA
GTTTTTTCAATTTTTTTTGTTTTTTTTGAACTTTTGGTCGCAAAAATAGA
AAATGAGAATTTTTTTTCAGTTAATGCAGCAAGTGTGTAGAGATTGTTTG
ATAAACGAAAATTGAAGCCGCTAGACTACGGGTGTTTGTAAACGAACAGA
ACAAACACCTGTCTAAACAAAAAAGAACGATGTTTGTATATTAGATCAGA
GTTTAATTCTAGATAAACGCTGCTGATCTAATCGCGTGGGTTGCGAAATT
CGATAGGAATTCGCTCATGCAGTTGCTGATTTTGAGTGTCGTATGAGATT
TTTAAATTTGACCTTTTCTCAGTATCTTTCAGGAATTTTTTTATGAAAAA
AGAAGCAATGACGTACAAGGTAAATTACGCAAACTCCGTAAGTATTCTAA
AAGTACCGCAGGCATCGTTCCGCCTTGCCTGTCTTTTTTTTATCCCTAAA
ATCACAATCAATTTTCAGTTTTTTTAGAAACAGATTTCACTGTAACAAAA
GTTGCTTTCTTTCTTAAAAATTTTCCTTGTTAAACTTTCATCTGAATGAG
GTCTAAAATTCGAGTTCTCTTCTTACCGGGTCGAAATTTAAAGGTGTAGA
AAGTTCTATAAAAAATCGTTTCATTTTTAAAGGAGAGAGAGTCTGCTGAC
CTACTAAATATGACCACCAAAGGAGAAACAAAGAGACTGGTGGTTGAGAA
GACACACCAAATAACCTCAAAACAAACAAATGAACTTTTAACGCCTGCTA
AACCACCACCACAGGCAGCTGGGGATGACACCACTACCAGTCATCCACTA
TCATCAAGCCACAAGTATTAGTGGAACCTGCTAGTTCCGCTGCCACCATA
ATCACCCCAGAAAGTATCCCAAGGAAAGCAGAAGATGATCCCTCCACCAA
CAGCTGAGAAGTACAAGACCAGTCCTGAAGAGTGGCTACCCCCCGACCAA
TCTCCAATCCCCCCAAGCAAAGATGGAAGAAGTGTCAAGTTTAGGAAATT
TTTATTATTTTTATTATTTTATTAGTCAGCCCTGAGCAGGGAACGCCTCC
AAAGAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006557XLOC_006557Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011687-exon-sc0000131-1575043694:486811..487447TCONS_00011687-exon-sc0000131-1575043694:486811..487447Clytia hemisphaericaexon
TCONS_00011687-exon-sc0000131-1575043694:486139..486565TCONS_00011687-exon-sc0000131-1575043694:486139..486565Clytia hemisphaericaexon
TCONS_00011687-exon-sc0000131-1510915933:486811..487447TCONS_00011687-exon-sc0000131-1510915933:486811..487447Clytia hemisphaericaexon
TCONS_00011687-exon-sc0000131-1510915933:486139..486565TCONS_00011687-exon-sc0000131-1510915933:486139..486565Clytia hemisphaericaexon
TCONS_00011687-exon-sc0000131-1491911889:486811..487447TCONS_00011687-exon-sc0000131-1491911889:486811..487447Clytia hemisphaericaexon
TCONS_00011687-exon-sc0000131-1491911889:486139..486565TCONS_00011687-exon-sc0000131-1491911889:486139..486565Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000131supercontigsc0000131:486139..487447 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0216499	0	0.0865671	0	2.32574	1.4055	4.08118	6.17194	0	0	0	0	2.39885	0	0	0	0.221737	0	0	0.229533	0.217294	0	1.55233	0.504564	4.90646	7.04462	0.826246	0	3.37623	3.21862
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011687 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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