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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011713 ID=TCONS_00011713|Name=TCONS_00011713|organism=Clytia hemisphaerica|type=transcript|length=1811bp
ttgtaatctacacatactaattcgcgagtttccgttgttttttttggaat
ctaaaagatgtatcacgaaatgaaacgtttttcgacctcagccgcgcgac
tatgtggcgaaaagtggaacttgacTATAATTTTGACATATTTTCGTTTA
TTTCTATCTTTCAgacataaaaaaagaaataaaaaacatgatTAGAAGAA
TTTTGCAACAAAGTTTTCCATCAGTTAAATCAAACACTCGGTTATCACGA
TGTTTTTGTACCAGTTACCAGCCCAAAAACCAGTCTGAAGAGCTCAATAT
TGGTCAGCCAACACCTCACACACATCCTCATTTATTTGGTGGTCAAACAG
AATGCACTCCTTGTATTACACATGAAGAATATAAAACACGACGTTCAAAA
TTGATGCAAAGGTTAAGTGAGCAACATTCTCTGAGAGATTTCGATCGTCA
TATCGTTGTGCTAACAGCAAATGAGTTGAAAATCATGTCTAACGATATCC
CATACCCTTTTCACCAAGATGTAGATTTCCTTTATTTGACTGGTCTCAAC
GAACCAAACGCTATAGCTGTTCTTGAACTCGCTCCTCCAAATGAAATGGA
CTTTTTACTATTCGTACAGCCCAAAGATCCTAAACGTGAATTATGGGACG
GCGCGGTCGCTGGCGAGCGAGCGGCTGTTGATTATTTCAACGCGGATGAA
GCATTCCCATTGAGTTCTTTTACGTCTGTTTTCCGTGATCGATTCAAAGA
CCGTAAATCATGTATTTGGATTAAAAAGGGTAAAGATACCAACAAAAAGA
ACGCAAATGAAATCTCCAAGACTTTCCAATCCAATCGTTTCTCTTCGTGC
TCCATTGAAGATGTCCGAATGCATGTACAGCGCATGCGTGTTCAAAAATC
ATTTGCAGAGGCTAAAATGTTGCAGGCTAGTGCTGCTATTGGAAGTAGAG
CTTTTCAAGAAGTGATACGGCAAACACGCCCCGGTGATTCAGAGGCGTTA
CCACATGCAGTGTTGGAATCCCAATGCAGGGCGTTAGGTGCCCAACATTT
ATCTTTTCCACCCGTTGTTGCAGGCGGGAATAGGGCAAATACTCTGCATT
ACATCAATAATGATCAAATACTCAACGATGGTGATTTAGTACTCATGGAC
GGTGGATGTGTTTACCATGGTTACGCAAGTGACATCACTCGCACATGGCC
TGTTAatggtcatttttcaaaaccgCAAGCCAGACTATACGATATCGTTT
TACGCGTTTTGAAAGAATGCACCACTCGCTGCGACGGTAAAACGTCAATG
AACTCCTTGCACGGAATCATGTTGAAACTCTTGGGCCAAGAACTTCAACA
AATTGGTCTCATTGACTCTAAGATAACCAAAGACGCTGAGCTCCAACGGG
CTGCCGGTAACTTTTGTCCACACCATCTAGGACACTATCTCGGGATGGAT
ACACACGATTGTCCGCTTATCCATCGTGGACTTGCGCTTACTTCCGGTAT
GGTCTTCACATTGGAACCGGGGGTTTACATACCGGAAAGTGCAACCGATG
TTCCAAGAGAATATCGTGGTATCGGAATTCGAATTGAGGATGATGTCTTG
ATGACTGAAGATGGACCTTTGGTGTTGACCAGAGAtttaccaaaagaaat
tgaagataTTGAAAACTTAATTGCTAGCGGCAGATGAATAAATGGATTGC
GTTTTagttatttacaaaaaattattttagtatGGTTTAgctagtttttt
ttaatgtcaCATTCACATTTTTGGAATACTTTCTCAAGATAAAGCATTAT
ACCTTAAGAGC Run BLAST on NCBI protein sequence of TCONS_00011713-protein >TCONS_00011713-protein ID=TCONS_00011713-protein|Name=TCONS_00011713-protein|organism=Clytia hemisphaerica|type=polypeptide|length=499bp
MIRRILQQSFPSVKSNTRLSRCFCTSYQPKNQSEELNIGQPTPHTHPHLF
GGQTECTPCITHEEYKTRRSKLMQRLSEQHSLRDFDRHIVVLTANELKIM
SNDIPYPFHQDVDFLYLTGLNEPNAIAVLELAPPNEMDFLLFVQPKDPKR
ELWDGAVAGERAAVDYFNADEAFPLSSFTSVFRDRFKDRKSCIWIKKGKD
TNKKNANEISKTFQSNRFSSCSIEDVRMHVQRMRVQKSFAEAKMLQASAA
IGSRAFQEVIRQTRPGDSEALPHAVLESQCRALGAQHLSFPPVVAGGNRA
NTLHYINNDQILNDGDLVLMDGGCVYHGYASDITRTWPVNGHFSKPQARL
YDIVLRVLKECTTRCDGKTSMNSLHGIMLKLLGQELQQIGLIDSKITKDA
ELQRAAGNFCPHHLGHYLGMDTHDCPLIHRGLALTSGMVFTLEPGVYIPE
SATDVPREYRGIGIRIEDDVLMTEDGPLVLTRDLPKEIEDIENLIASGR Run BLAST on NCBI transcript from alignment at sc0000131:425589..427399 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011713 ID=TCONS_00011713|Name=TCONS_00011713|organism=Clytia hemisphaerica|type=transcript|length=1811bp|location=Sequence derived from alignment at sc0000131:425589..427399 (Clytia hemisphaerica)
GCTCTTAAGGTATAATGCTTTATCTTGAGAAAGTATTCCAAAAATGTGAA
TGtgacattaaaaaaaactagcTAAACCatactaaaataattttttgtaa
ataactAAAACGCAATCCATTTATTCATCTGCCGCTAGCAATTAAGTTTT
CAAtatcttcaatttcttttggtaaaTCTCTGGTCAACACCAAAGGTCCA
TCTTCAGTCATCAAGACATCATCCTCAATTCGAATTCCGATACCACGATA
TTCTCTTGGAACATCGGTTGCACTTTCCGGTATGTAAACCCCCGGTTCCA
ATGTGAAGACCATACCGGAAGTAAGCGCAAGTCCACGATGGATAAGCGGA
CAATCGTGTGTATCCATCCCGAGATAGTGTCCTAGATGGTGTGGACAAAA
GTTACCGGCAGCCCGTTGGAGCTCAGCGTCTTTGGTTATCTTAGAGTCAA
TGAGACCAATTTGTTGAAGTTCTTGGCCCAAGAGTTTCAACATGATTCCG
TGCAAGGAGTTCATTGACGTTTTACCGTCGCAGCGAGTGGTGCATTCTTT
CAAAACGCGTAAAACGATATCGTATAGTCTGGCTTGcggttttgaaaaat
gaccatTAACAGGCCATGTGCGAGTGATGTCACTTGCGTAACCATGGTAA
ACACATCCACCGTCCATGAGTACTAAATCACCATCGTTGAGTATTTGATC
ATTATTGATGTAATGCAGAGTATTTGCCCTATTCCCGCCTGCAACAACGG
GTGGAAAAGATAAATGTTGGGCACCTAACGCCCTGCATTGGGATTCCAAC
ACTGCATGTGGTAACGCCTCTGAATCACCGGGGCGTGTTTGCCGTATCAC
TTCTTGAAAAGCTCTACTTCCAATAGCAGCACTAGCCTGCAACATTTTAG
CCTCTGCAAATGATTTTTGAACACGCATGCGCTGTACATGCATTCGGACA
TCTTCAATGGAGCACGAAGAGAAACGATTGGATTGGAAAGTCTTGGAGAT
TTCATTTGCGTTCTTTTTGTTGGTATCTTTACCCTTTTTAATCCAAATAC
ATGATTTACGGTCTTTGAATCGATCACGGAAAACAGACGTAAAAGAACTC
AATGGGAATGCTTCATCCGCGTTGAAATAATCAACAGCCGCTCGCTCGCC
AGCGACCGCGCCGTCCCATAATTCACGTTTAGGATCTTTGGGCTGTACGA
ATAGTAAAAAGTCCATTTCATTTGGAGGAGCGAGTTCAAGAACAGCTATA
GCGTTTGGTTCGTTGAGACCAGTCAAATAAAGGAAATCTACATCTTGGTG
AAAAGGGTATGGGATATCGTTAGACATGATTTTCAACTCATTTGCTGTTA
GCACAACGATATGACGATCGAAATCTCTCAGAGAATGTTGCTCACTTAAC
CTTTGCATCAATTTTGAACGTCGTGTTTTATATTCTTCATGTGTAATACA
AGGAGTGCATTCTGTTTGACCACCAAATAAATGAGGATGTGTGTGAGGTG
TTGGCTGACCAATATTGAGCTCTTCAGACTGGTTTTTGGGCTGGTAACTG
GTACAAAAACATCGTGATAACCGAGTGTTTGATTTAACTGATGGAAAACT
TTGTTGCAAAATTCTTCTAatcatgttttttatttctttttttatgtcTG
AAAGATAGAAATAAACGAAAATATGTCAAAATTATAgtcaagttccactt
ttcgccacatagtcgcgcggctgaggtcgaaaaacgtttcatttcgtgat
acatcttttagattccaaaaaaaacaacggaaactcgcgaattagtatgt
gtagattacaa Coding sequence (CDS) from alignment at sc0000131:425589..427399 >TCONS_00011713 ID=TCONS_00011713|Name=TCONS_00011713|organism=Clytia hemisphaerica|type=CDS|length=1500bp|location=Sequence derived from alignment at sc0000131:425589..427399 (Clytia hemisphaerica)
TCATCTGCCGCTAGCAATTAAGTTTTCAAtatcttcaatttcttttggta
aaTCTCTGGTCAACACCAAAGGTCCATCTTCAGTCATCAAGACATCATCC
TCAATTCGAATTCCGATACCACGATATTCTCTTGGAACATCGGTTGCACT
TTCCGGTATGTAAACCCCCGGTTCCAATGTGAAGACCATACCGGAAGTAA
GCGCAAGTCCACGATGGATAAGCGGACAATCGTGTGTATCCATCCCGAGA
TAGTGTCCTAGATGGTGTGGACAAAAGTTACCGGCAGCCCGTTGGAGCTC
AGCGTCTTTGGTTATCTTAGAGTCAATGAGACCAATTTGTTGAAGTTCTT
GGCCCAAGAGTTTCAACATGATTCCGTGCAAGGAGTTCATTGACGTTTTA
CCGTCGCAGCGAGTGGTGCATTCTTTCAAAACGCGTAAAACGATATCGTA
TAGTCTGGCTTGcggttttgaaaaatgaccatTAACAGGCCATGTGCGAG
TGATGTCACTTGCGTAACCATGGTAAACACATCCACCGTCCATGAGTACT
AAATCACCATCGTTGAGTATTTGATCATTATTGATGTAATGCAGAGTATT
TGCCCTATTCCCGCCTGCAACAACGGGTGGAAAAGATAAATGTTGGGCAC
CTAACGCCCTGCATTGGGATTCCAACACTGCATGTGGTAACGCCTCTGAA
TCACCGGGGCGTGTTTGCCGTATCACTTCTTGAAAAGCTCTACTTCCAAT
AGCAGCACTAGCCTGCAACATTTTAGCCTCTGCAAATGATTTTTGAACAC
GCATGCGCTGTACATGCATTCGGACATCTTCAATGGAGCACGAAGAGAAA
CGATTGGATTGGAAAGTCTTGGAGATTTCATTTGCGTTCTTTTTGTTGGT
ATCTTTACCCTTTTTAATCCAAATACATGATTTACGGTCTTTGAATCGAT
CACGGAAAACAGACGTAAAAGAACTCAATGGGAATGCTTCATCCGCGTTG
AAATAATCAACAGCCGCTCGCTCGCCAGCGACCGCGCCGTCCCATAATTC
ACGTTTAGGATCTTTGGGCTGTACGAATAGTAAAAAGTCCATTTCATTTG
GAGGAGCGAGTTCAAGAACAGCTATAGCGTTTGGTTCGTTGAGACCAGTC
AAATAAAGGAAATCTACATCTTGGTGAAAAGGGTATGGGATATCGTTAGA
CATGATTTTCAACTCATTTGCTGTTAGCACAACGATATGACGATCGAAAT
CTCTCAGAGAATGTTGCTCACTTAACCTTTGCATCAATTTTGAACGTCGT
GTTTTATATTCTTCATGTGTAATACAAGGAGTGCATTCTGTTTGACCACC
AAATAAATGAGGATGTGTGTGAGGTGTTGGCTGACCAATATTGAGCTCTT
CAGACTGGTTTTTGGGCTGGTAACTGGTACAAAAACATCGTGATAACCGA
GTGTTTGATTTAACTGATGGAAAACTTTGTTGCAAAATTCTTCTAatcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011713-exon-sc0000131-1491911889:425589..427399 | TCONS_00011713-exon-sc0000131-1491911889:425589..427399 | Clytia hemisphaerica | exon |
| TCONS_00011713-exon-sc0000131-1510915933:425589..427399 | TCONS_00011713-exon-sc0000131-1510915933:425589..427399 | Clytia hemisphaerica | exon |
| TCONS_00011713-exon-sc0000131-1575043694:425589..427399 | TCONS_00011713-exon-sc0000131-1575043694:425589..427399 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000131 | supercontig | sc0000131:425589..427399 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0030145 | manganese ion binding |
| GO:0004177 | aminopeptidase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0004177 |
aminopeptidase activity |
| molecular_function |
GO:0030145 |
manganese ion binding |
Blast
BLAST of TCONS_00011713 vs. Swiss-Prot (Human)
Match: XPP3 (Probable Xaa-Pro aminopeptidase 3 OS=Homo sapiens GN=XPNPEP3 PE=1 SV=1) HSP 1 Score: 382.874 bits (982), Expect = 2.294e-125 Identity = 205/499 (41.08%), Postives = 305/499 (61.12%), Query Frame = 2
Query: 218 PSVKSNTRLSRCFCTSYQ-------PKNQSEELNIGQPTPHTHPHLFGGQTECTPCITHEEYKTRRSKLMQRLSEQHSLRDFDRHIVVLTANELKIMSNDIPYPFHQDVDFLYLTGLNEPNAIAVLELAPPNEM---DFLLFVQPKDPKRELWDGAVAGERAAVDYFNADEAFPLSSFTSVFRDRFKDRKSCIWIKKGKDTNKK-NANEISKTFQSNRFSSCSIEDVRMHVQRMRVQKSFAEAKMLQASAAIGSRAFQEVIRQTRPGDSEALPHAVLESQCRALGAQHLSFPPVVAGGNRANTLHYINNDQILNDGDLVLMDGGCVYHGYASDITRTWPVNGHFSKPQARLYDIVLRVLKECTTRCDGKTSMNSLHGIMXXXXXXXXXXXXXXDSKITKDAELQRAAGNFCPHHLGHYLGMDTHDCPLIHRGLALTSGMVFTLEPGVYIPESATDVPREYRGIGIRIEDDVLMTEDGPLVLTRDLPKEIEDIENLIASG 1681
P+V + LS C S + P+ + +GQP+P THPHL E TP ++ EY RR KLM + ++ + VV+ +N MSNDIPY FHQD +FLYL G EP++I VL+ P ++ +LFV +DP RELWDG +G A+ DEA+ L F + + K + +W + ++ + +++ + ++ S + V+ +QR+R+ KS AE + +Q + + S+AF E + ++ EA +A E +CRA GA L++PPVVAGGNR+NTLHY+ N+Q++ DG++VL+DGGC Y SDITRTWPVNG F+ PQA LY+ VL + ++C C TS+ +++ +ML L+GQ+L+ +G++ K K+ +AA +CPHH+GHYLGMD HD P + R L L GMV T+EPG+YIPE D P ++RG+G+RIEDDV++T+D PL+L+ D PKE+ DIE + +
Sbjct: 12 PAVANVRGLSGCMLCSQRRYSLQPVPERRIPNRYLGQPSPFTHPHLLR-PGEVTPGLSQVEYALRRHKLMSLIQKEAQGQSGTDQTVVVLSNPTYYMSNDIPYTFHQDNNFLYLCGFQEPDSILVLQSLPGKQLPSHKAILFVPRRDPSRELWDGPRSGTDGAIALTGVDEAYTLEEFQHLL-PKMKAETNMVWYDWMRPSHAQLHSDYMQPLTEAKAKSKNKVRGVQQLIQRLRLIKSPAEIERMQIAGKLTSQAFIETMFTSKAPVEEAFLYAKFEFECRARGADILAYPPVVAGGNRSNTLHYVKNNQLIKDGEMVLLDGGCESSCYVSDITRTWPVNGRFTAPQAELYEAVLEIQRDCLALCFPGTSLENIYSMMLTLIGQKLKDLGIM--KNIKENNAFKAARKYCPHHVGHYLGMDVHDTPDMPRSLPLQPGMVITIEPGIYIPEDDKDAPEKFRGLGVRIEDDVVVTQDSPLILSADCPKEMNDIEQICSQA 506
The following BLAST results are available for this feature:
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