TCONS_00011728 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011728
Unique NameTCONS_00011728
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length413

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011728 ID=TCONS_00011728|Name=TCONS_00011728|organism=Clytia hemisphaerica|type=transcript|length=413bp
NgctgtcctccttacagtccacGCTCATAAGGTTCAGGAGTAAaggctgt
cctccttacagCCCACGCTCATAAGGTTAGGAGTAAAGGCTGTCTTCCTT
ACAGTCTACGCTCATAtggctgtcctccttacagtcctTCGACAGGCCGT
CATCCTTACGGTCTTAGGCGCTTAAGTTAGGCCTCGTATTGCATGGTACA
TCCCCAACATCAGCCCCAAAGCGAACAATATTTCACATTTATTTCATTTC
ACAGATTTCGGCAATTTCAATCATTTCAAGTTTACTATATTTTACTCATT
TCGACAAATACACATTTCGGAACCTAATACACTTTTGTCATTTATTTGCC
TCCCCAAAATCTTCACCTGTTTACACTGTTAACAACATTTCGACCCTCTG
Acgtaaaaattaa
Run BLAST on NCBI

transcript from alignment at sc0000132:278989..279401+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011728 ID=TCONS_00011728|Name=TCONS_00011728|organism=Clytia hemisphaerica|type=transcript|length=413bp|location=Sequence derived from alignment at sc0000132:278989..279401+ (Clytia hemisphaerica)
NgctgtcctccttacagtccacGCTCATAAGGTTCAGGAGTAAaggctgt
cctccttacagCCCACGCTCATAAGGTTAGGAGTAAAGGCTGTCTTCCTT
ACAGTCTACGCTCATAtggctgtcctccttacagtcctTCGACAGGCCGT
CATCCTTACGGTCTTAGGCGCTTAAGTTAGGCCTCGTATTGCATGGTACA
TCCCCAACATCAGCCCCAAAGCGAACAATATTTCACATTTATTTCATTTC
ACAGATTTCGGCAATTTCAATCATTTCAAGTTTACTATATTTTACTCATT
TCGACAAATACACATTTCGGAACCTAATACACTTTTGTCATTTATTTGCC
TCCCCAAAATCTTCACCTGTTTACACTGTTAACAACATTTCGACCCTCTG
Acgtaaaaattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006591XLOC_006591Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011728-exon-sc0000132-1491911889:278989..279401TCONS_00011728-exon-sc0000132-1491911889:278989..279401Clytia hemisphaericaexon
TCONS_00011728-exon-sc0000132-1510915933:278989..279401TCONS_00011728-exon-sc0000132-1510915933:278989..279401Clytia hemisphaericaexon
TCONS_00011728-exon-sc0000132-1575043694:278989..279401TCONS_00011728-exon-sc0000132-1575043694:278989..279401Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000132supercontigsc0000132:278989..279401 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.34934	1.20836	0	1.07372	3.82702	1.69075	3.18938	4.79761	2.74343	5.08587	3.85352	2.29751	1.83752	1.26434	0.288719	0.5012	1.0972	0.572463	0	0.778706	0.894713	0	0.68013	0	3.44996	2.95317	1.93625	1.04016	1.26264	0.27686
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011728 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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