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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011729 ID=TCONS_00011729|Name=TCONS_00011729|organism=Clytia hemisphaerica|type=transcript|length=3739bp
aagaGCCAAAAAAGTACCGAGTAATGAGTCATACACTTTTGATAAGAGGC
TTACGCTCACTGTTAGTTTTTCGTCCGAATTATTATCATCCCGGTAGCTT
TGTACTTACTAGAAGGTAATTCAACAGTCGCCCTTGAAGATGATCGTTCA
CCGGTAGACCGCCCACTACCGCCCGTCGACGAAATCTTATTCATCATTTT
GGCTGTATGGCGTGGCGCTCTCGTTGAACCTCTAGAATTCGGATTCCGTG
AAATTTGCGCTGACGAAGATGACCCAGTGGCTCCATCCGGTTGAGTAGGT
GTCCTGTGAGGTGTGATTTCCGGTTTGCTTCGCGATCCCGCAGACCCGCT
GCGGCCACCGTCAGGCGTTTCGAAAATGCGTTTGGGGTTATTTTCTCTTG
GCGGTAAAGGTGGAGGCGCCTCTTCGGAGGGTGTTGAAGGCCTTGATGAA
GTTTCTAAGCTAGTGACGCGAGCGATATCTGAAGCGACCAAAGTTGGAGG
GGTAGGAGTAACAGGTTGTGGAGTGTCAGTGCCGGTCACGGATGAGGAGG
AAGCTCCCTGTTGCCGAGAATTTTTACGCGAATTCTTTTTTCCACGCATA
CTACGCCTTCCTTCTTTATTACGTTGAGACGTTGAAGTTTCTGTTGAGGA
GGTTGCAGAGTTAGCTCTTGAGTTTGTTGATGATTGATTTGGTTTTGTTG
AAGAAGTAGGAATCGTTGTTGCAGACCGAGTGGAAGGTGTTGTGCTTGTG
ATCGATTTTGCTGTAGACGGGGTCGTTTTTGTTGAAGTTAACTTCGAACG
ACTGTCAACAACTGGTGTAGTTGTCGTGGTTACTGCTGCTATGGTGGTTG
CTATAGATGATGTTGTCGTTGTAAGAGACCGTGGTCCAGGAATTGGAAGT
TGTGTTGTTGGCGGAGTAGAAGATGCGTGGGACGGATTCGATGTGGTGTT
TGTCGTAAAAGGTGGGAATTCGTTCAGTAGCGCTTGGTTTAataagtttg
ttttattttgaggTAAATTATTGCTCGCTTTTTTGCTCGCAGTTTGAAGA
TCAGTTGTTATTATTGGTTCACTAAACGGAATATCTGTCCGACTTGTTAT
TTGGTTTGGATTAATTTTCGGTTTTGCACCACCCGAAGGTCTCGATGGTT
CAGTATTCGGTAAGAGTTTGCTACTTTCCAAATCGGCTAATCGAGGCGTG
GCGAATTTCTCATCAAAAGTGCTTGTGACATCGAGACTTTCATTTGTTCG
CTTGTGCGGAGGAACAGCTGGCGCCTCGTCAAAGGAAACCCAATTTTGTC
TCTGCGTTGTTGAAGTATCAAGTCCTATTTTCATCGGTGCCGAAGGCTTA
ATATAATTCTTACTGTCGCGCGGTCGTGCTCCTCCGGGATAAGCACTGGA
TTTAGGAGTTTCTGTTATGGGGTCTGTTTTATTTGGAGGTTTTAGCATCA
ACTCTATCGTATCAGGAGAGTTGGACATTGGAGCACTAGATATCTTCTTC
CTAGCTACGATATGCTGACTTggatcaaaattattttctacATTGTTTGA
TTGCTCTTGCCTTGGTGTTTGGTTCATCGGGAGGAAAATAGCCTCATAGT
GGTCAGCCCTCGATCGACTGTTACTTCGACCGTTCTTGACTTGAGCGTTC
AAAGGTGTTAATTTAGTGACCTGCTCTGATGAACTCAATGGTGGTTCGTT
ATCACTAAGCTCTTCCTGTAGAAGTTCTTGACAACTGTTAGCGCGGATTA
TCTCCCCATTGACAGGGGCACCCAGCAAGTAACGTTCGTCTGCTTCCGCC
GAAGAAGCCAAAGACAGGTCATCTTCGTCCTGATCATGAGTAAATTCATG
GGCTACCTCCACGtatccttcttcttcttcatcttcttcctCTTGAGGGC
TTCCCTCTACCTCCTGGTAGCTAGCCCCTTCCTCCTCAGTTGAAGGGTAG
GAGTGGAACTGAAGGAGGTCACAGTTACTCCTCTCAGAAGTAGGAGAAGG
GTCCATCGATTCTTCATCTAATAAGTCTAGACCGTTATTCACAACACTTT
TAATGTTTAGCATGTTTGCTCCTTCAGGTAAGTGTGAGCGCGTGTTCTGT
ATGGTGGGTGTCGTGCTACCGTTACAAGAAGCACTACATGTCATTACTGT
AGCCTCATCCAAAGTAGGTATCACGTTAACGTCTACAAGATTGGTGTCTT
CGTTTTGAGAATTGTCGACAGGATTTGAATGTCCAGTTAAACCGTTTGCA
GATGCNAAGGAAACCCAATTTTGTCTCTGCGTTGTTGAAGTATCAAGTCC
TATTTTCATCGGTGCCGAAGGCTTAATATAATTCTTACTGTCGCGCGGCC
GTGCTCCTCCAGGATAAGCACTGGATTTAGGAGTTTCTGTTATGGGGTCT
GTTTTATTTGGAGGTTTTAGCATCAACTCTATCGTATCAGGAGAGTTGGA
CATTGGAGCACTAGATATCTTCTTCCTAGCTACGATATGCTGACTTggat
caaaattattttctacATTGTTTGATTGCTCTTGCCTTGGTGTTTGGTTC
ATCGGGAGGAAAATAGCCTCATAGTGGTCAGCCCTCGATCGACTGTTACT
TCGACCGTTCTTGACTTGAGCGTTCAAAGGTGTCAATTTAGTGACCTGCT
CTGATGAACTCAATGGTGGTTCGTTATCACTAAGCTCTTCCTGTAGAAGT
TCTTGACAACTGTTAGCGCGGATTATCTCCCCATTGACAGGGGCACCCAG
CAAGTAACGTTCGTCTGCTTCCGCCGAAGAAGCCAAAGACAGGTCATCTT
CGTCCTGATCATGAGTAAATTCATGGGCTACCTCCACGtatccttcttct
tcttcatcttcttcctCTTGAGGGCTTCCCTCTACCTCCTGGTAGCTAGC
CCCTTCCTCCTCAGTTGAAGGGTAGGAGTGGAACTGAAGGAGGTCACAGT
TACTCCTCTCAGAAGTAGGAGAAGGGTCCATCGATTCTTCATCTAATAAG
TCTAGACCGTTATTCACAACACTTTTAATGTTTAGCATGTTTGCTCCTTC
AGGTAAGTGTGAGCGCGTGTTCTGTATGGTGGGTGTCGTGCTACCGTTAC
AAGAAGCACTACATGTCATTACTGTAGCCTCATCCAAAGTAGGTATCACG
TTAACGTCTACAAGATTGGTGTCTTCGTTTTGAGAATTGTCGACAGGATT
TGAATGTCCAGTTAAACCGTTTGCAGATGCATCCGAAACTTCTCCCTGAA
TGATATTGTTATCCGGTTCTAAGATAGCGTAATCATGGTCTGCTGAATGC
AGGCTATCCACATCAGAGTCTGTGACACTACAAGGGATATCAACTTCGTT
TATTAGAGGTCCGTGTGCGAAATGTTCAACCGCACTTAAAGGTTCGTCAG
CGTGTATGTCCTCGATCGGTGTAGAAGGTTCCGATTCGGATTCTACAAAG
TCTGGTTCGGCAGGTGGCAGGGGAGTAGGTGCGCTGGACTCAACCGGTGG
TGAGAGGGCACGAGGTAAAAAGTTGACTTCTTCGTAAGAGGAGCTTCGTT
TAGTTCTTTTGCGTTGTTTGATACTGTTGGTGATGTTGTTCTCCGATAGT
TGTGGATGATAAGAGACAGGTCTTTGTCTGGGAGTGACCGTTATCGGACT
ACCGTTTTGAAGCGATGAAACGTGTTTTGGGATGGGTGGGGGTACGTTTT
CGATATTATTGCTGGCTGAGATTCTCTTTGGTAAACAAG Run BLAST on NCBI transcript from alignment at sc0000132:316135..319941+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011729 ID=TCONS_00011729|Name=TCONS_00011729|organism=Clytia hemisphaerica|type=transcript|length=3807bp|location=Sequence derived from alignment at sc0000132:316135..319941+ (Clytia hemisphaerica)
aagaGCCAAAAAAGTACCGAGTAATGAGTCATACACTTTTGATAAGAGGC
TTACGCTCACTGTTAGTTTTTCGTCCGAATTATTATCATCCCGGTAGCTT
TGTACTTACTAGAAGGTAATTCAACAGTCGCCCTTGAAGATGATCGTTCA
CCGGTAGACCGCCCACTACCGCCCGTCGACGAAATCTTATTCATCATTTT
GGCTGTATGGCGTGGCGCTCTCGTTGAACCTCTAGAATTCGGATTCCGTG
AAATTTGCGCTGACGAAGATGACCCAGTGGCTCCATCCGGTTGAGTAGGT
GTCCTGTGAGGTGTGATTTCCGGTTTGCTTCGCGATCCCGCAGACCCGCT
GCGGCCACCGTCAGGCGTTTCGAAAATGCGTTTGGGGTTATTTTCTCTTG
GCGGTAAAGGTGGAGGCGCCTCTTCGGAGGGTGTTGAAGGCCTTGATGAA
GTTTCTAAGCTAGTGACGCGAGCGATATCTGAAGCGACCAAAGTTGGAGG
GGTAGGAGTAACAGGTTGTGGAGTGTCAGTGCCGGTCACGGATGAGGAGG
AAGCTCCCTGTTGCCGAGAATTTTTACGCGAATTCTTTTTTCCACGCATA
CTACGCCTTCCTTCTTTATTACGTTGAGACGTTGAAGTTTCTGTTGAGGA
GGTTGCAGAGTTAGCTCTTGAGTTTGTTGATGATTGATTTGGTTTTGTTG
AAGAAGTAGGAATCGTTGTTGCAGACCGAGTGGAAGGTGTTGTGCTTGTG
ATCGATTTTGTTGTAGACAGGGTCGTTTTTGTTGAAGTTAACNCCGAGTG
GAAGGTGTTGTGCTTGTGATCGATTTTGCTGTAGACGGGGTCGTTTTTGT
TGAAGTTAACTTCGAACGACTGTCAACAACTGGTGTAGTTGTCGTGGTTA
CTGCTGCTATGGTGGTTGCTATAGATGATGTTGTCGTTGTAAGAGACCGT
GGTCCAGGAATTGGAAGTTGTGTTGTTGGCGGAGTAGAAGATGCGTGGGA
CGGATTCGATGTGGTGTTTGTCGTAAAAGGTGGGAATTCGTTCAGTAGCG
CTTGGTTTAataagtttgttttattttgaggTAAATTATTGCTCGCTTTT
TTGCTCGCAGTTTGAAGATCAGTTGTTATTATTGGTTCACTAAACGGAAT
ATCTGTCCGACTTGTTATTTGGTTTGGATTAATTTTCGGTTTTGCACCAC
CCGAAGGTCTCGATGGTTCAGTATTCGGTAAGAGTTTGCTACTTTCCAAA
TCGGCTAATCGAGGCGTGGCGAATTTCTCATCAAAAGTGCTTGTGACATC
GAGACTTTCATTTGTTCGCTTGTGCGGAGGAACAGCTGGCGCCTCGTCAA
AGGAAACCCAATTTTGTCTCTGCGTTGTTGAAGTATCAAGTCCTATTTTC
ATCGGTGCCGAAGGCTTAATATAATTCTTACTGTCGCGCGGTCGTGCTCC
TCCGGGATAAGCACTGGATTTAGGAGTTTCTGTTATGGGGTCTGTTTTAT
TTGGAGGTTTTAGCATCAACTCTATCGTATCAGGAGAGTTGGACATTGGA
GCACTAGATATCTTCTTCCTAGCTACGATATGCTGACTTggatcaaaatt
attttctacATTGTTTGATTGCTCTTGCCTTGGTGTTTGGTTCATCGGGA
GGAAAATAGCCTCATAGTGGTCAGCCCTCGATCGACTGTTACTTCGACCG
TTCTTGACTTGAGCGTTCAAAGGTGTTAATTTAGTGACCTGCTCTGATGA
ACTCAATGGTGGTTCGTTATCACTAAGCTCTTCCTGTAGAAGTTCTTGAC
AACTGTTAGCGCGGATTATCTCCCCATTGACAGGGGCACCCAGCAAGTAA
CGTTCGTCTGCTTCCGCCGAAGAAGCCAAAGACAGGTCATCTTCGTCCTG
ATCATGAGTAAATTCATGGGCTACCTCCACGtatccttcttcttcttcat
cttcttcctCTTGAGGGCTTCCCTCTACCTCCTGGTAGCTAGCCCCTTCC
TCCTCAGTTGAAGGGTAGGAGTGGAACTGAAGGAGGTCACAGTTACTCCT
CTCAGAAGTAGGAGAAGGGTCCATCGATTCTTCATCTAATAAGTCTAGAC
CGTTATTCACAACACTTTTAATGTTTAGCATGTTTGCTCCTTCAGGTAAG
TGTGAGCGCGTGTTCTGTATGGTGGGTGTCGTGCTACCGTTACAAGAAGC
ACTACATGTCATTACTGTAGCCTCATCCAAAGTAGGTATCACGTTAACGT
CTACAAGATTGGTGTCTTCGTTTTGAGAATTGTCGACAGGATTTGAATGT
CCAGTTAAACCGTTTGCAGATGCNAAGGAAACCCAATTTTGTCTCTGCGT
TGTTGAAGTATCAAGTCCTATTTTCATCGGTGCCGAAGGCTTAATATAAT
TCTTACTGTCGCGCGGCCGTGCTCCTCCAGGATAAGCACTGGATTTAGGA
GTTTCTGTTATGGGGTCTGTTTTATTTGGAGGTTTTAGCATCAACTCTAT
CGTATCAGGAGAGTTGGACATTGGAGCACTAGATATCTTCTTCCTAGCTA
CGATATGCTGACTTggatcaaaattattttctacATTGTTTGATTGCTCT
TGCCTTGGTGTTTGGTTCATCGGGAGGAAAATAGCCTCATAGTGGTCAGC
CCTCGATCGACTGTTACTTCGACCGTTCTTGACTTGAGCGTTCAAAGGTG
TCAATTTAGTGACCTGCTCTGATGAACTCAATGGTGGTTCGTTATCACTA
AGCTCTTCCTGTAGAAGTTCTTGACAACTGTTAGCGCGGATTATCTCCCC
ATTGACAGGGGCACCCAGCAAGTAACGTTCGTCTGCTTCCGCCGAAGAAG
CCAAAGACAGGTCATCTTCGTCCTGATCATGAGTAAATTCATGGGCTACC
TCCACGtatccttcttcttcttcatcttcttcctCTTGAGGGCTTCCCTC
TACCTCCTGGTAGCTAGCCCCTTCCTCCTCAGTTGAAGGGTAGGAGTGGA
ACTGAAGGAGGTCACAGTTACTCCTCTCAGAAGTAGGAGAAGGGTCCATC
GATTCTTCATCTAATAAGTCTAGACCGTTATTCACAACACTTTTAATGTT
TAGCATGTTTGCTCCTTCAGGTAAGTGTGAGCGCGTGTTCTGTATGGTGG
GTGTCGTGCTACCGTTACAAGAAGCACTACATGTCATTACTGTAGCCTCA
TCCAAAGTAGGTATCACGTTAACGTCTACAAGATTGGTGTCTTCGTTTTG
AGAATTGTCGACAGGATTTGAATGTCCAGTTAAACCGTTTGCAGATGCAT
CCGAAACTTCTCCCTGAATGATATTGTTATCCGGTTCTAAGATAGCGTAA
TCATGGTCTGCTGAATGCAGGCTATCCACATCAGAGTCTGTGACACTACA
AGGGATATCAACTTCGTTTATTAGAGGTCCGTGTGCGAAATGTTCAACCG
CACTTAAAGGTTCGTCAGCGTGTATGTCCTCGATCGGTGTAGAAGGTTCC
GATTCGGATTCTACAAAGTCTGGTTCGGCAGGTGGCAGGGGAGTAGGTGC
GCTGGACTCAACCGGTGGTGAGAGGGCACGAGGTAAAAAGTTGACTTCTT
CGTAAGAGGAGCTTCGTTTAGTTCTTTTGCGTTGTTTGATACTGTTGGTG
ATGTTGTTCTCCGATAGTTGTGGATGATAAGAGACAGGTCTTTGTCTGGG
AGTGACCGTTATCGGACTACCGTTTTGAAGCGATGAAACGTGTTTTGGGA
TGGGTGGGGGTACGTTTTCGATATTATTGCTGGCTGAGATTCTCTTTGGT
AAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011729-exon-sc0000132-1491911889:316135..316870 | TCONS_00011729-exon-sc0000132-1491911889:316135..316870 | Clytia hemisphaerica | exon |
| TCONS_00011729-exon-sc0000132-1510915933:316135..316870 | TCONS_00011729-exon-sc0000132-1510915933:316135..316870 | Clytia hemisphaerica | exon |
| TCONS_00011729-exon-sc0000132-1575043694:316135..316870 | TCONS_00011729-exon-sc0000132-1575043694:316135..316870 | Clytia hemisphaerica | exon |
| TCONS_00011729-exon-sc0000132-1491911889:316939..319941 | TCONS_00011729-exon-sc0000132-1491911889:316939..319941 | Clytia hemisphaerica | exon |
| TCONS_00011729-exon-sc0000132-1510915933:316939..319941 | TCONS_00011729-exon-sc0000132-1510915933:316939..319941 | Clytia hemisphaerica | exon |
| TCONS_00011729-exon-sc0000132-1575043694:316939..319941 | TCONS_00011729-exon-sc0000132-1575043694:316939..319941 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000132 | supercontig | sc0000132:316135..319941 + |
Blast
The following BLAST results are available for this feature:
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