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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011747 ID=TCONS_00011747|Name=TCONS_00011747|organism=Clytia hemisphaerica|type=transcript|length=3476bpRun BLAST on NCBI transcript from alignment at sc0000132:520502..533323+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011747 ID=TCONS_00011747|Name=TCONS_00011747|organism=Clytia hemisphaerica|type=transcript|length=12822bp|location=Sequence derived from alignment at sc0000132:520502..533323+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00011747 vs. Swiss-Prot (Human)
Match: GRN (Granulins OS=Homo sapiens GN=GRN PE=1 SV=2) HSP 1 Score: 154.066 bits (388), Expect = 1.094e-38 Identity = 98/235 (41.70%), Postives = 123/235 (52.34%), Query Frame = 1
Query: 991 GNTCCKLSSGGYGCCPLPKATCCSDGVHCCPNGYSCDG--GFCQKGNERIKASTKKIA-IKL-------KDVVCPDGQSECPSGNTCCKLSSGEYGCCPLPKATCCSDGVHCCPNGYSCDG-GVCSKATEEVKPSLLKTTKSSPQFHHHHLANVQKFDKSDIVCPDGQSECPSGYTCCPLDGGYYGCCPYDHAVCCSDEQHCCPLNSVCSPDCTECLDNNNRRFPSQTKTPSKQV 1662
G TCC+L SG +GCCP +A CC D +HCCP G++CD G C++G ++ K A + L +DV C D S CPS +TCC+L+SGE+GCCP+P+A CCSD HCCP GY+C G C + +E V L K H DI C D + CP G TCCP GG + CC HAVCC D QHCCP C+ C P+ S V
Sbjct: 293 GYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQGPHQVPWMEKAPAHLSLPDPQALKRDVPC-DNVSSCPSSDTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQGYTCVAEGQCQRGSEIVA-GLEKMPARRASLSH----------PRDIGC-DQHTSCPVGQTCCPSLGGSWACCQLPHAVCCEDRQHCCPAGYTCNVKARSCEKEVVSAQPATFLARSPHV 514 HSP 2 Score: 150.214 bits (378), Expect = 1.471e-37 Identity = 86/190 (45.26%), Postives = 110/190 (57.89%), Query Frame = 2
Query: 470 DSVSNCPDGNTCCKLSSGEWGCCPVKDAVCCSDGVHCCPSGYTC--SKGFCTQS------LTKEANKIVI----AQLRSVECPDGMSECPSGNTCCKLSSGQWGCCPLPKATCCSDGVHCCPNGYNC-NSGTCTKGNEVIKASLKTKAISLT-----NVACPDGQSECPSGNTCCKLSSGGYGCCPLPKA 985
D +CPDG TCC+L SG WGCCP AVCC D +HCCP+G+TC KG C Q + K + + A R V C D +S CPS +TCC+L+SG+WGCCP+P+A CCSD HCCP GY C G C +G+E++ K A + ++ C D + CP G TCC G + CC LP A
Sbjct: 285 DMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQGPHQVPWMEKAPAHLSLPDPQALKRDVPC-DNVSSCPSSDTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQGYTCVAEGQCQRGSEIVAGLEKMPARRASLSHPRDIGC-DQHTSCPVGQTCCPSLGGSWACCQLPHA 472 HSP 3 Score: 149.058 bits (375), Expect = 3.367e-37 Identity = 88/229 (38.43%), Postives = 119/229 (51.97%), Query Frame = 1
Query: 994 NTCCKLSSGGYGCCPLPKATCCSDGVHCCPNGYSCDGGFCQ--------KGNERIKASTKKIAIKLKD-VVCPDGQSECPSGNTCCKLSSGEYGCCPLPKATCCSDGVHCCPNGYSCDGGVCSKATEEVKPSLLKTTKSSPQFHHHHLANVQKFDKSDIVCPDGQSECPSGYTCCPLDGGYYGCCPYDHAVCCSDEQHCCPLNSVCSPDCTECLDNNNRRFPSQTKTPS 1653
+TCC + G +GCCP+P+A+CC D VHCCP+G CD + +++ A A+ L V+CPD +S CP G+TCC+L SG+YGCCP+P ATCCSD +HCCP CD ++ L ++ L + D+ C D + CP GYTCC L G +GCCP+ AVCC D HCCP C C + + P K P+
Sbjct: 137 STCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFCDLVHTRCITPTGTHPLAKKLPAQRTNRAVALSSSVMCPDARSRCPDGSTCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVCD---------LIQSKCLSKENATTDL----LTKLPAHTVGDVKC-DMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTC-EQGPHQVPWMEKAPA 350 HSP 4 Score: 147.517 bits (371), Expect = 1.059e-36 Identity = 90/228 (39.47%), Postives = 114/228 (50.00%), Query Frame = 1
Query: 991 GNTCCKLSSGGYGCCPLPKATCCSDGVHCCPNGYSCDGG----FCQKGNERIKASTKKIAIKLKDVVCPDGQSECPSGNTCCKLSSGEYGCCPLPKATCCSDGVHCCPNGYSCDGGVCSKATEEVKPSLLKTTKSSPQFHHHHLANVQKFDKSDIVCPDGQSECPSGYTCCPLDGGYYGCCPYDHAVCCSDEQHCCPLNSVCSPDCTECLDNNNRRFPSQTKTPSKQV 1662
G++C SG CCP P+A C DG HCCP G+ C F + GN + A + CPD Q ECP +TCC + G +GCCP+P+A+CC D VHCCP+G CD T L K + N S ++CPD +S CP G TCC L G YGCCP +A CCSD HCCP ++VC ++CL N TK P+ V
Sbjct: 70 GHSCIFTVSGTSSCCPFPEAVACGDGHHCCPRGFHCSADGRSCFQRSGNNSVGA-----------IQCPDSQFECPDFSTCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFCDLVHTRCITPTGTHPLAKKLPA-------QRTNRAVALSSSVMCPDARSRCPDGSTCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVCDLIQSKCLSKENATTDLLTKLPAHTV 279 HSP 5 Score: 146.747 bits (369), Expect = 2.344e-36 Identity = 93/247 (37.65%), Postives = 123/247 (49.80%), Query Frame = 2
Query: 437 GMLXLKSVTCPDSVSNCPDGNTCCKLSSGEWGCCPVKDAVCCSDGVHCCPSGYTCSKGF-----------CTQSLTKEANKIVIAQLRSVECPDGMSECPSGNTCCKLSSGQWGCCPLPKATCCSDGVHCCPNGYNCN---SGTCTKGNEVIKASLKTKAISLTNVACPDGQSECPSGNTCCKLSSGGYGCCPLPKATVEIPAVNC----HLVDTVAVLCLK-PHVV-LMEFIAVQMDIAATVAFVK 1117
G + ++ CPDS CPD +TCC + G WGCCP+ A CC D VHCCP G C + L + +A SV CPD S CP G+TCC+L SG++GCCP+P ATCCSD +HCCP C+ S +K N K A ++ +V C D + CP G TCC+L SG +GCCP +A ++C DT C + PH V ME + + A +
Sbjct: 117 GNNSVGAIQCPDSQFECPDFSTCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFCDLVHTRCITPTGTHPLAKKLPAQRTNRAVALSSSVMCPDARSRCPDGSTCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVCDLIQSKCLSKENATTDLLTKLPAHTVGDVKC-DMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQGPHQVPWMEKAPAHLSLPDPQALKR 362 HSP 6 Score: 139.813 bits (351), Expect = 3.874e-34 Identity = 85/230 (36.96%), Postives = 117/230 (50.87%), Query Frame = 1
Query: 994 NTCCKLSSGGYGCCPLPKATCCSDGVHCCPNGYSCDG-GFCQKGNERIKASTKKIAIKL-----KDVVCPDGQSECPSGNTCCKLSSGEYGCCPLPKATCCSDGVHCCPNGYSCD--GGVCSKATEEVKPSLLKTTKSSPQFHHHHLANVQKFDKSDIVCPDGQSECPSGYTCCPLDGGYYGCCPYDHAVCCSDEQHCCPLNSVCSPDCTECLDNNNRRFPSQTKTPSKQ 1659
+TCC+L+SG +GCCP+P+A CCSD HCCP GY+C G CQ+G+E + K A + +D+ C D + CP G TCC G + CC LP A CC D HCCP GY+C+ C K +P+ LA D+ C +G C TCC + + CCPY VCC+D +HCCP C+ T+CL R+ + + P+ +
Sbjct: 376 DTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQGYTCVAEGQCQRGSEIVAGLEKMPARRASLSHPRDIGC-DQHTSCPVGQTCCPSLGGSWACCQLPHAVCCEDRQHCCPAGYTCNVKARSCEKEVVSAQPATF-------------LARSPHVGVKDVECGEGHF-CHDNQTCCRDNRQGWACCPYRQGVCCADRRHCCPAGFRCAARGTKCLRREAPRWDAPLRDPALR 590 HSP 7 Score: 136.732 bits (343), Expect = 3.881e-33 Identity = 82/197 (41.62%), Postives = 112/197 (56.85%), Query Frame = 2
Query: 479 SNCPDGNTCCKLSSGEWGCCPVKDAVCCSDGVHCCPSGYTCSKGFCTQSLTKEANKIVIAQLRSVECPDGMSECPSGNTCCKLSSGQWGCCPLPKATCCSDGVHCCPNGYNCN---------SGTCTKGNEVIKASLKTKAISLTN-VACPDGQSECPSGNTCCKLSSGGYGCCPLPKATVEIPAVNCHLVDTVAVL 1039
++C G++C SG CCP +AV C DG HCCP G+ CS + N V A ++CPD ECP +TCC + G WGCCP+P+A+CC D VHCCP+G C+ +GT + + A +A++L++ V CPD +S CP G+TCC+L SG YGCCP+P AT ++C DTV L
Sbjct: 65 AHCSAGHSCIFTVSGTSSCCPFPEAVACGDGHHCCPRGFHCSADG-RSCFQRSGNNSVGA----IQCPDSQFECPDFSTCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFCDLVHTRCITPTGTHPLAKK-LPAQRTNRAVALSSSVMCPDARSRCPDGSTCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVCDL 255 HSP 8 Score: 133.265 bits (334), Expect = 4.656e-32 Identity = 77/182 (42.31%), Postives = 103/182 (56.59%), Query Frame = 2
Query: 470 DSVSNCPDGNTCCKLSSGEWGCCPVKDAVCCSDGVHCCPSGYTC-SKGFCTQ------SLTK-EANKIVIAQLRSVECPDGMSECPSGNTCCKLSSGQWGCCPLPKATCCSDGVHCCPNGYNCNSGTCTKGNEVIKAS-----LKTKAISLTNVACPDGQSECPSGNTCCKLSSGGYGCCPL 976
D+VS+CP +TCC+L+SGEWGCCP+ +AVCCSD HCCP GYTC ++G C + L K A + ++ R + C D + CP G TCC G W CC LP A CC D HCCP GY CN + EV+ A ++ + + +V C +G C TCC+ + G+ CCP
Sbjct: 367 DNVSSCPSSDTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQGYTCVAEGQCQRGSEIVAGLEKMPARRASLSHPRDIGC-DQHTSCPVGQTCCPSLGGSWACCQLPHAVCCEDRQHCCPAGYTCNVKARSCEKEVVSAQPATFLARSPHVGVKDVECGEGHF-CHDNQTCCRDNRQGWACCPY 546 HSP 9 Score: 103.219 bits (256), Expect = 2.080e-22 Identity = 59/118 (50.00%), Postives = 72/118 (61.02%), Query Frame = 3
Query: 105 IKASLKTKAISLRD-VACPDGQSQCPSGNTCCKLSSGGYGCCPLPKATCCSDGVHCCPNGYTCG--QGTCM-KGNEIIQASTKTFAFRLKSVTCPDSVSNCPDGNTCCKLSSGEWGCC 446
+ A +A++L V CPD +S+CP G+TCC+L SG YGCCP+P ATCCSD +HCCP C Q C+ K N TK A + V C VS CPDG TCC+L SG WGCC
Sbjct: 191 LPAQRTNRAVALSSSVMCPDARSRCPDGSTCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVCDLIQSKCLSKENATTDLLTKLPAHTVGDVKCDMEVS-CPDGYTCCRLQSGAWGCC 307 HSP 10 Score: 95.9005 bits (237), Expect = 3.687e-20 Identity = 58/142 (40.85%), Postives = 76/142 (53.52%), Query Frame = 3
Query: 78 NVLMVNHXVIKASLKTKAISLRDVACPDGQSQCPSGNTCCKLSSGGYGCCPLPKATCCSDGVHCCPNGYTC-GQGTCMKGNEIIQASTKTFAFRLKSVTCP-----DSVSNCPDGNTCCKLSSGEWGCCX*RV*PVQIPFLI 485
V + SL RDV C D S CPS +TCC+L+SG +GCCP+P+A CCSD HCCP GYTC +G C +G+EI+ A + R S++ P D ++CP G TCC G W CC Q+P +
Sbjct: 341 QVPWMEKAPAHLSLPDPQALKRDVPC-DNVSSCPSSDTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQGYTCVAEGQCQRGSEIV-AGLEKMPARRASLSHPRDIGCDQHTSCPVGQTCCPSLGGSWACC-------QLPHAV 473 HSP 11 Score: 94.3597 bits (233), Expect = 1.253e-19 Identity = 54/118 (45.76%), Postives = 70/118 (59.32%), Query Frame = 3
Query: 120 KTKAISLRDVACPDGQSQCPSGNTCCKLSSGGYGCCPLPKATCCSDGVHCCPNGYTCG--QGTCMKGNEIIQASTKTFAF-------RLKSVTCPDSVSNCPDGNTCCKLSSGEWGCC 446
K A ++ DV C D + CP G TCC+L SG +GCCP +A CC D +HCCP G+TC +GTC +G + K A LK D+VS+CP +TCC+L+SGEWGCC
Sbjct: 273 KLPAHTVGDVKC-DMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQGPHQVPWMEKAPAHLSLPDPQALKRDVPCDNVSSCPSSDTCCQLTSGEWGCC 389 HSP 12 Score: 93.2041 bits (230), Expect = 2.983e-19 Identity = 49/113 (43.36%), Postives = 66/113 (58.41%), Query Frame = 3
Query: 135 SLRDVACPDGQSQCPSGNTCCKLSSGGYGCCPLPKATCCSDGVHCCPNGYTCG---------QGTCMKGNEIIQASTKTFAFRLKSVTCPDSVSNCPDGNTCCKLSSGEWGCC 446
S+ + CPD Q +CP +TCC + G +GCCP+P+A+CC D VHCCP+G C GT ++ T SV CPD+ S CPDG+TCC+L SG++GCC
Sbjct: 120 SVGAIQCPDSQFECPDFSTCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFCDLVHTRCITPTGTHPLAKKLPAQRTNRAVALSSSVMCPDARSRCPDGSTCCELPSGKYGCC 232 HSP 13 Score: 87.0409 bits (214), Expect = 2.580e-17 Identity = 50/149 (33.56%), Postives = 73/149 (48.99%), Query Frame = 2
Query: 470 DSVSNCPDGNTCCKLSSGEWGCCPVKDAVCCSDGVHCCPSGYTCS--KGFCTQSLTKEANKIVIAQ-----LRSVECPDGMSECPSGNTCCKLSSGQWGCCPLPKATCCSDGVHCCPNGYNCNSGTCTKGNEVIKASLKTKAISLTNVA 895
D ++CP G TCC G W CC + AVCC D HCCP+GYTC+ C + + +A+ ++ VEC +G C TCC+ + W CCP + CC+D HCCP G+ C + +G + ++ L + A
Sbjct: 445 DQHTSCPVGQTCCPSLGGSWACCQLPHAVCCEDRQHCCPAGYTCNVKARSCEKEVVSAQPATFLARSPHVGVKDVECGEGHF-CHDNQTCCRDNRQGWACCPYRQGVCCADRRHCCPAGFRCAA----RGTKCLRREAPRWDAPLRDPA 588 The following BLAST results are available for this feature:
BLAST of TCONS_00011747 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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