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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011756 ID=TCONS_00011756|Name=TCONS_00011756|organism=Clytia hemisphaerica|type=transcript|length=738bp
CATGGACAGACATGATGATGAAGGAGGGGtgtaataaaaataacaaaggc
caCTAAAATGATCCTCTTACAGACGTGTCAAGGCCGCGGACGCTTGTCGC
TCAAGATATTTCTAGAACATTCAactAGCCAACTCTCAAAATGGAACGTA
CATTTGTTATGGTTAAACCTGATGGTGTTGCTCGTGGACTTGTTGCAAAG
ATTATCAAACGATTTGAGCAAAGAGGATACAAACTTGTCGGAATGAAATT
CATGAAAGCAAGCGAAGATCTTTTGAAGCAACATTATGGAGACTTAGCTG
GTAAACCATTTTTCAATGGACTTGTTGAATTCATTGGATCCGGTCCAGTT
GTTCCAATGGTCTGGGAAGGAAAAGATGTTGTCAAACAAGGTAGACAGAT
GATGGGCGAGACTAACCCATTAGCTTCAAAACCAGGATCTATCCGCGGTG
ACTTTTCTATTGACATTGGCCGAAATATTATTCATGGCAGTGATTCTGTT
GAATCTgccaaaaaagaaatcaactTGTGGTTTAAAGAAGACGAATTAGT
CAGCTGGACCTGCCCTTTAGAAAAATCTGTTTATGAATAggatttgtaaa
atatttagttttTAACAATGTAGAAAGAAAGGGATGATTAAATCACTTTA
AATggctttttaaatcttttctttgGAGAAGAATAAAATCTAATTACATT
AGGATTTTGACAGCTATTGACAAAAATTGCTAATTAAC Run BLAST on NCBI transcript from alignment at sc0000132:157783..161312- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011756 ID=TCONS_00011756|Name=TCONS_00011756|organism=Clytia hemisphaerica|type=transcript|length=3530bp|location=Sequence derived from alignment at sc0000132:157783..161312- (Clytia hemisphaerica)
CATGGACAGACATGATGATGAAGGAGGGGTGTAATAAAAATAACAAAGGC
CACTAAAATGATCCTCTTACAGACGTGTCAAGGCCGCGGACGCTTGTCGC
TCAAGATATTTCTAGAACATTCAGTAAGTATTCAAGGATCCATTGGCCAT
TTGTTACTGTTACACTGGAATAAACTCAATTTTATCTCAATCAAAACTTT
TTGGATGACTCTTACTCTGGTATTAAGTGGATTCAACATTAAAGTGGATA
AAAATGTTAATTTGTACAACTGAGAAACAGACCATGTGTTTGGGTTCTTT
ATTTTCCATCATTGCTGCAACTTTCTTCTCTAATTTAAGCAATTATCTTG
TGAGATACAAATCTCAAGTATATAGTTGTGTTCTTCCAAATGTGTCCTCA
ATATTCACTCTTTAACCTTTGGACAGGAGGAACATTATATTAACAATCTT
TGATTTTATATGATTGCTTGGTCTAGTTACAACACACTACTGGACATGTG
CTGTTGCTTATTCACGATGAAAGTTACTGAAAATTAAAGATATTGTTTCT
TTGATATCATAGAAACAATGCGCGCTTTTTTGCTGGTGAAGCAGAATAAA
TAAATAGTTTTCAAAATTTTGTGTCCCACTGTGTAAAAAGAAAAGGGGAG
AGAGTTCATAAAATTTGGCGTTAATTTTAAAGGATCTTACTTATTAAATT
TGTCTTTTTCGGGACATATTTTTTAAGGGCTGTAAATGCTATTGACCAGG
CATAGTTAATCGATACAATTGATATTACACCGTTTAGTAGTGTCGACTGC
GCACGCGTCCAATCAATTTTCCATTGTTTTGATTTTAGTGATCGCGATAA
ACTACGGGGTAGAGCGTAAAAAAACGGTAGGTAAAAATTTTGTTTTCATA
AGGAAACCCAGCAGAAAAACGGTAGGTAAAGAACTTCTTTTAATCATAAC
TTCGTTTCCTCTAGATGAATTTTTGTGAAATTTTCAGGAGAGATCCATAA
AATTATCATTGATATCATGTTCAAATATATAAATCATTCTTTTTAAGGGA
AAGAAAAAAATTGACAATGTTTACATTCCTCTAATCTTCCACAGTACTAA
AGTGCGCATTTTTACCTACCGTTTTCACGGTGGAACAGGGTGGAGGAGGC
GAGACTCCTAAACGGTGTATTGGCTGTGATCGATAAGTAATTGATAACAA
GCTTACAGTGACAGCAGTTATGCTTAAAATCAGCATTAAATAGTTGAAAA
ACAGACTGATCAGTAAAATACCAAGTGTTAAAAAAGCTCCAGAATTTCCT
GAGTTCCAGCAGCCAGGTTTAAGTTATTTTTAAAGTTTATTTTATCTGCT
GTTTAAAGTACAAAAGACTTTATAGTCCAAAACAATCCTTGATATTCAAA
AAAAATTTAAATTTTTTACAAAAGTTGCCTTTTGGATTTCCCAAACATTT
GTTTTAAGTGTTCACTCTGGTTCACTTCCACAATAATTTGTGTAATTACA
CTTTCTGTCCATTGACAATCAAATATACATATTAGTAAATTATTAGTAAA
TTTCCAAGTTTTTCCATTTCCGGTCAATAAATGTGTTACAAAGACGTGAC
TACATGGATATTTGTATTAAAAAATATTACATTGGTTTATTCTATATCAA
TAACACAACATCTTCCTTCCGTTTCATATTTTCAGGTGGATTTGACCCTT
GCGCACAGAAAAAATTTCTGTATGTCCATTGACTTACTAGTTTTTTTTGG
CTTGCTAATATTAATTGTCGCAAAGTTTGTAAATTTTACAGCTTTTTTGT
TCGTAAGAAAAGGATGAAACTTTTTTAAATTTTTTTATTGCCCTCGCTAA
AATTTATCCACGCAAAGTTTTTAGAAATTGTGATTCGCTAAAATATTAAT
AAATTCAAAAAAATCAAGATTTACCTGACTCGCTAATATATGCTAAAATT
GGTCCCGCTAAAATAAAATTTCTACGATTAAAGTATCTCAATTTTGGGAT
ACCTTAAATTCCCTTAATTTCGCGCAGCTTGTAAAATAGAATATTTGTGC
ATCCTTAAATTTTCGCGCATTTTACAATTTATGGGATACTTTCTGAGTTT
TTTTTACCATTTTAAGAGTTTTACACTTTCAGTGTGTATTCAAGCTAGAT
TTTACACCCCATAGGTATATTTACCATGAATCGAGGTCCCATTTTATTAA
AAGAGTCCTAAGATGAGATTTCTACACGCTCAGAACGATTACTGATTTCG
GGCACCCTTTAATTTTCGCGCGGCCAGTGTGCGAAAATAGGCCTATTTCA
CGCGCGTTTATATTCGCGCATATTCTGCGCGGAATTAAAGGGGCACAAAA
ATTAATGGAATTAAGGAAATCAATCCTCAAGAGGCTTCTAACTTTCAATA
AACAGTAAAACAAGAATGAAACAAAAATTATTCTATTTCCACATTATCCC
ATCAACCCTTGTGTACTTTTATGTCCAGTAGTAAAAAAACATTTGAGTTA
ACAAATTACAAAACTAGAAGAAAATTTCAGTTTGGAAGGGATTTCCTCAT
TCTTTTTTTTTTCTTTTTTTCTAGACTAGCCAACTCTCAAAATGGAACGT
ACATTTGTTATGGTTAAACCTGATGGTGTTGCTCGTGGACTTGTTGCAAA
GATTATCAAACGATTTGAGCAAAGAGGATACAAACTTGTCGGAATGAAAT
TCATGAAAGCAAGCGAAGATCTTTTGAAGCAACATTATGGAGACTTAGCT
GGTANCGTCTAATGGGGGCATTTGGGTGCTTGGAAAAAACACTGCATCAA
CCCTTGTGTACTTTTATGTCCAGTAGTAAAAAAACATTCGAGTTAACAAA
TTTCAAAACTAGAAGAAAATTACAGTTTGGAAGGGATTTTCTCATTCATT
TTCTTTTTTTTCTAGACTAGCCAACTCTCAAAATGGAACGTACATTTGTT
ATGGTTAAACCTGATGGTGTTGCTCGTGGACTTGTTGCAAAGATTATCAA
ACGATTTGAGCAAAGAGGATACAAACTTGTCGGAATGAAATTCATGAAAG
CAAGCGAAGATCTTTTGAAGCAACATTATGGAGACTTAGCTGGTAAACCA
TTTTTCAATGGACTTGTTGAATTCATTGGATCCGGTCCAGTTGTTCCAAT
GGTCTGGGAAGGAAAAGATGTTGTCAAACAAGGTAGACAGATGATGGGCG
AGACTAACCCATTAGCTTCAAAACCAGGATCTATCCGCGGTGACTTTTCT
ATTGACATTGGCCGAAATATTATTCATGGCAGTGATTCTGTTGAATCTGC
CAAAAAAGAAATCAACTTGTGGTTTAAAGAAGACGAATTAGTCAGCTGGA
CCTGCCCTTTAGAAAAATCTGTTTATGAATAGGATTTGTAAAATATTTAG
TTTTTAACAATGTAGAAAGAAAGGGATGATTAAATCACTTTAAATGGCTT
TTTAAATCTTTTCTTTGGAGAAGAATAAAATCTAATTACATTAGGATTTT
GACAGCTATTGACAAAAATTGCTAATTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011756-exon-sc0000132-1575043694:161190..161312 | TCONS_00011756-exon-sc0000132-1575043694:161190..161312 | Clytia hemisphaerica | exon |
| TCONS_00011756-exon-sc0000132-1575043694:157783..158397 | TCONS_00011756-exon-sc0000132-1575043694:157783..158397 | Clytia hemisphaerica | exon |
| TCONS_00011756-exon-sc0000132-1510915933:161190..161312 | TCONS_00011756-exon-sc0000132-1510915933:161190..161312 | Clytia hemisphaerica | exon |
| TCONS_00011756-exon-sc0000132-1510915933:157783..158397 | TCONS_00011756-exon-sc0000132-1510915933:157783..158397 | Clytia hemisphaerica | exon |
| TCONS_00011756-exon-sc0000132-1491911889:161190..161312 | TCONS_00011756-exon-sc0000132-1491911889:161190..161312 | Clytia hemisphaerica | exon |
| TCONS_00011756-exon-sc0000132-1491911889:157783..158397 | TCONS_00011756-exon-sc0000132-1491911889:157783..158397 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000132 | supercontig | sc0000132:157783..161312 - |
Blast
BLAST of TCONS_00011756 vs. Swiss-Prot (Human)
Match: NDKA (Nucleoside diphosphate kinase A OS=Homo sapiens GN=NME1 PE=1 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 5.004e-70 Identity = 101/148 (68.24%), Postives = 123/148 (83.11%), Query Frame = 3
Query: 144 ERTFVMVKPDGVARGLVAKIIKRFEQRGYKLVGMKFMKASEDLLKQHYGDLAGKPFFNGLVEFIGSGPVVPMVWEGKDVVKQGRQMMGETNPLASKPGSIRGDFSIDIGRNIIHGSDSVESAKKEINLWFKEDELVSWTCPLEKSVYE 587
ERTF+ +KPDGV RGLV +IIKRFEQ+G++LVG+KFM+ASEDLLK+HY DL +PFF GLV+++ SGPVV MVWEG +VVK GR M+GETNP SKPG+IRGDF I +GRNIIHGSDSVESA+KEI LWF +ELV +T + +YE
Sbjct: 5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 152
The following BLAST results are available for this feature:
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