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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011758 ID=TCONS_00011758|Name=TCONS_00011758|organism=Clytia hemisphaerica|type=transcript|length=3031bpRun BLAST on NCBI protein sequence of TCONS_00011758-protein >TCONS_00011758-protein ID=TCONS_00011758-protein|Name=TCONS_00011758-protein|organism=Clytia hemisphaerica|type=polypeptide|length=924bp MLTEEQKKKIEENRRKALEKRKRKKHTSPNRSCIPENISSPPFKKRPINNRun BLAST on NCBI transcript from alignment at sc0000132:165178..183688- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011758 ID=TCONS_00011758|Name=TCONS_00011758|organism=Clytia hemisphaerica|type=transcript|length=18511bp|location=Sequence derived from alignment at sc0000132:165178..183688- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000132:165178..183688- >TCONS_00011758 ID=TCONS_00011758|Name=TCONS_00011758|organism=Clytia hemisphaerica|type=CDS|length=2775bp|location=Sequence derived from alignment at sc0000132:165178..183688- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011758 vs. Swiss-Prot (Human)
Match: SMAL1 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Homo sapiens GN=SMARCAL1 PE=1 SV=1) HSP 1 Score: 413.305 bits (1061), Expect = 3.712e-127 Identity = 213/521 (40.88%), Postives = 332/521 (63.72%), Query Frame = 1
Query: 1246 WLFHVKDYKEVVSCFENIANIKIKESIPSSVVKILHYAHEEQKRKPS-----DKIDLSKIEENILKKLMPFQKTGVQFAIQKKGRVLIADDMGLGKTVQTIAICNYYIEDWPVLIICPSSVKMSWQQHFLSWMPTLRESDISIIHTGKEKIRAVPGSITIVSCDLASKFANDIQNCGFQIIIVDESHALKNSQAKRTKNLLPILQNSRRTILLSGTPALSRPKELFTQISALRRELFKSYFKFAKRYCDAREGRYGLEDDGCSNSDELNAILKSTVMLRRMKYEVLDQLPSKIRQILILDPSFI--KISKQFKTLEKAFVASRRTKEN-RTPLLQYYSATAEVKVGGVVQFISEKLESTTEKIIVFAHHLTMLDQIEEETRCKNIESIRISGTTGSKARQSLVDIFNNTASCRLAILSITAAGTGLNMTASSLVIFAELYWNPGHLIQAEDRAYRIGQKKSVSVIYLIARQTADDWIWPLIKNKLNVLTNLGVGTTKGLSDAKCTE------AEKKITDFF 2766
W F ++++ ++++ + +++ + +P+++ L +A + +K S + DLS+++ ++ LMPFQ+ GV FAI K GR+L+ADDMGLGKT+Q I I +Y ++WP+L++ PSSV+ +W+Q FL W+P+L I+++ TGK+++ A G I IVS DL SK ++ F+++I+DESH LKNS+ R + +P+L+ ++R ILLSGTPA+SRP EL+TQI A++ F + F RYCDA+ +G + G SN EL +L+ VMLRR+K +VL QLP+K R+I+++ P I + K +TK+ + L+ +++ TAE K+ V+++I + LES EK +VFAHH +LD I +E K+++ IRI G+T S R+ L F + +A+LSITAA GL +++ LV+FAEL+WNPG LIQAEDR +RIGQ SV + YL+A+ TADD++WPLI+ K+ VL G+ T + T+ ++KI D F
Sbjct: 372 WSFLLEEHSKLIAKVRCLPQVQL-DPLPTTLT--LAFASQLKKTSLSLTPDVPEADLSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFYRKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKDRLTA--GLINIVSFDLLSKLEKQLKT-PFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLLLEEAVMLRRLKSDVLSQLPAKQRKIVVIAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALILFFNRTAEAKIPSVIEYILDLLESGREKFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKVLAEAGLSETNFSEMTESTDYLYKDPKQQKIYDLF 886 The following BLAST results are available for this feature:
BLAST of TCONS_00011758 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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