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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011785 ID=TCONS_00011785|Name=TCONS_00011785|organism=Clytia hemisphaerica|type=transcript|length=7791bpRun BLAST on NCBI protein sequence of TCONS_00011785-protein >TCONS_00011785-protein ID=TCONS_00011785-protein|Name=TCONS_00011785-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1316bp MVQTWDRYPSLANLNEVEDINPLRRAYSENHLNNTTVINEGPSTLAVSTNRun BLAST on NCBI transcript from alignment at sc0000132:281242..338611- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011785 ID=TCONS_00011785|Name=TCONS_00011785|organism=Clytia hemisphaerica|type=transcript|length=57370bp|location=Sequence derived from alignment at sc0000132:281242..338611- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000132:281242..338611- >TCONS_00011785 ID=TCONS_00011785|Name=TCONS_00011785|organism=Clytia hemisphaerica|type=CDS|length=31608bp|location=Sequence derived from alignment at sc0000132:281242..338611- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00011785 vs. Swiss-Prot (Human)
Match: HECW2 (E3 ubiquitin-protein ligase HECW2 OS=Homo sapiens GN=HECW2 PE=1 SV=2) HSP 1 Score: 617.846 bits (1592), Expect = 0.000e+0 Identity = 295/498 (59.24%), Postives = 379/498 (76.10%), Query Frame = 2
Query: 5678 VPKTYDEKVVAFLRQDKVNDVLKRRDCDFSTKASLHRKISFIKRDGVTGLKRLQNDMELVILLSMFEDDIQSYVPQ---------LTANTGTIHSVESLRGTSLISGRSPAPYKRDFDSKMRTFHKNLVVNGYGQGPGKVRLKIRRNNILEDAFEQVMKQQPRALHKEKLYIKFTGEEGLDYGGPAREFFFMISRELFNPYYGLFEYSASDTYTLQVSPASRYSDNANNWFRFIGRXXXXXXXXXXXXDVFFTRTIYKALLRERWDLSDLETIDQDFHQSAVWILENDITDILDLYFTVNDEVFGHSKVIERELKPNGHNILVTEENKQEYVDLMIKWKIERGMGEQMQQIVKGFNEALDQNMIKMFDDRELELVIAGTADIDIKDWRKNTDYRSGYHDKHQVVKWFWQAVDSFPNEQRLRLLQFVTGTSSIPYEGFGALRGSTGPKKFTIDCWGTEQMLPRAHTCFNRLDLPPYKNFDTLLEKLIYAIEETSTFGIE 7144
VP Y++K+VAFLRQ + ++L+ R D + SL KI FI+ +G GL RL +D +LV+LLS+FE++I SYVP + + S ++ GT + R+PAPYKRDF++K+R F++ L GYGQGPGK++L IRR+++LEDAF Q+M + L + KLY+ F GEEGLDY GP+REFFF++SRELFNPYYGLFEYSA+DTYT+Q+SP S + DN + WFRF GRI+ LALIHQ+LLD FFTR YKALLR DLSDLE +D++FHQS W+ +NDI DILDL FTVN+EVFG ++ ERELKP G NI VTE+NK+EY++ M+KW+IERG+ +Q + +V+GF E +D ++ +FD RELELVIAGTA+ID+ DWR NT+YR GYHD H V++WFW AV+ F NEQRLRLLQFVTGTSSIPYEGF +LRGS GP++F ++ WG LPRAHTCFNRLDLPPY +F L EKL+ A+EETSTFG+E
Sbjct: 1077 VPVAYNDKIVAFLRQPNIFEILQERQPDLTRNHSLREKIQFIRTEGTPGLVRLSSDADLVMLLSLFEEEIMSYVPPHALLHPSYCQSPRGSPVSSPQNSPGTQRANARAPAPYKRDFEAKLRNFYRKLETKGYGQGPGKLKLIIRRDHLLEDAFNQIMGYSRKDLQRNKLYVTFVGEEGLDYSGPSREFFFLVSRELFNPYYGLFEYSANDTYTVQISPMSAFVDNHHEWFRFSGRILGLALIHQYLLDAFFTRPFYKALLRILCDLSDLEYLDEEFHQSLQWMKDNDIHDILDLTFTVNEEVFG--QITERELKPGGANIPVTEKNKKEYIERMVKWRIERGVVQQTESLVRGFYEVVDARLVSVFDARELELVIAGTAEIDLSDWRNNTEYRGGYHDNHIVIRWFWAAVERFNNEQRLRLLQFVTGTSSIPYEGFASLRGSNGPRRFCVEKWGKITALPRAHTCFNRLDLPPYPSFSMLYEKLLTAVEETSTFGLE 1572 HSP 2 Score: 155.992 bits (393), Expect = 1.576e-37 Identity = 91/239 (38.08%), Postives = 133/239 (55.65%), Query Frame = 2
Query: 4727 LPSSWEKAVDSHGRVYYIDHNSKTTTWHRPKSGTPTSPE----HNFNEQLEQLDRRYQSLRRTIRAGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPVSSASVLTPTPNATPSRRGSSSADRRERAITDSPGCIFIKRRDFYQFIHNHTMANQFFQRNPTLQQILNRVRQEPTKFERYQHSRDVVTLLNFFASDALDLPPGWEMKNDVYGQSYFVDHSRRSTTFIDPRLPTE 5431
LP +WE +DSHGR++Y+DH ++TTTW RP + P +P+ N +Q+EQL+RRYQS+RRT+ R T A E AS N P S++ R + SP F+ +F+ +H++ A + F N L+ ++ +VR++ FERYQH+RD+V LN FA+ L+LP GWEMK+D G+++FVDH+ R+TTFIDPRLP +
Sbjct: 809 LPPNWEARIDSHGRIFYVDHVNRTTTWQRPTA--PPAPQVLQRSNSIQQMEQLNRRYQSIRRTMTNERPEENTNAIDGAGEEAD--------------------FHQASADFRRENILPH----STSRSRITLLLQSPPVKFLISPEFFTVLHSNPSAYRMFTNNTCLKHMITKVRRDTHHFERYQHNRDLVGFLNMFANKQLELPRGWEMKHDHQGKAFFVDHNSRTTTFIDPRLPLQ 1021 HSP 3 Score: 128.257 bits (321), Expect = 4.221e-29 Identity = 88/303 (29.04%), Postives = 152/303 (50.17%), Query Frame = 3
Query: 135 SLANLNEVEDINPLRRAYSENHLNNTTVINEGPSTLAVSTNRTNVGEK--IIITWNLSVAPSQKDWLGLYYAEDNNEV-LIDKREKQIGKSKIGSYTWYISKEFKYKE-VINVCVFKYFHGGLVKFIASTNVFTICCPLDMLPAQTTPPMAIPGVDD--LLDVLISGLKAADLKKGFFGKPNPYIKINVLPRVRHLSAGQKHHGLQWKSSAKQNSSDPVWDEKEFKVSATAADLLEIEVRNK--STRP-ASKFLGKLVFPLSKIIESCGFSRAKRITQYLIGRTT-ADKIQGTFTFVINVKKS 1013
SLA + + + L+RA S+ L V +E S+L S +G+ +II W++ DW+GLY+ ++N+ D + + + ++ G W I + E I +C FKY+HG A+T T+ P M+ A+ A + L+ +S L+A LKKG F P+PY+K+++ P + HHG + +S+ N+++P+W +++ A D+LEIE+++K +RP +FLGKL P+ +++E ++ Y +GR AD + G F + V S
Sbjct: 30 SLAAQSSMPENMTLQRANSDTDL----VTSESRSSLTASMYEYTLGQAQNLIIFWDIKEEVDPSDWIGLYHIDENSPANFWDSKNRGVTGTQKGQIVWRIEPGPYFMEPEIKIC-FKYYHGISGALRATTPCITVKNPAVMMGAEGMEGGASGNLHSRKLVSFTLSDLRAVGLKKGMFFNPDPYLKMSIQPGKKSSFPTCAHHGQERRSTIISNTTNPIWHREKYSFFALLTDVLEIEIKDKFAKSRPIIKRFLGKLTIPVQRLLERQAI--GDQMLSYNLGRRLPADHVSGYLQFKVEVTSS 325 The following BLAST results are available for this feature:
BLAST of TCONS_00011785 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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