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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011830 ID=TCONS_00011830|Name=TCONS_00011830|organism=Clytia hemisphaerica|type=transcript|length=492bp
cacgAAATGAAGTAATAATGTTAAAGAGGgttgaaaattaatttgaacAT
GCCTAAACAAACATGAAATCCAAAACAAATTATATCTTCGTATTGATTTA
TACAGTGGCGAATATTTGTTTTACTTTTGGTCATGAATTCAATTCACAAC
TTGTCTATCATGGACACAAAGAAATCGGAGATGTAAACGTTTCGTACTCG
TACGTTAACGTAGTACCGCACGTTGGTTACGAACTTCAGTTAACAACAGA
CTTCATTGCGAAGGAAATCAATGTTAATAATGGCCCTGGATGTGCAGCCA
ACTGCAGTCAATCAGAAAGTTGCGCCAGTGCAAACTTTTATGGAGATACC
AATACTTGTCAAGTTTTGTTGTCAGATCGTTTCACCCATTACAACTAGCa
attagctgtcgctatgaatgccccgctgatagcagatattagcccagagg
aatttagccatgaagagagcaagggaatcataatcagactGT Run BLAST on NCBI protein sequence of TCONS_00011830-protein >TCONS_00011830-protein ID=TCONS_00011830-protein|Name=TCONS_00011830-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MKSKTNYIFVLIYTVANICFTFGHEFNSQLVYHGHKEIGDVNVSYSYVNV
VPHVGYELQLTTDFIAKEINVNNGPGCAANCSQSESCASANFYGDTNTCQ
VLLSDRFTHYN Run BLAST on NCBI transcript from alignment at sc0000133:195565..196927+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011830 ID=TCONS_00011830|Name=TCONS_00011830|organism=Clytia hemisphaerica|type=transcript|length=1363bp|location=Sequence derived from alignment at sc0000133:195565..196927+ (Clytia hemisphaerica)
cacgAAATGAAGTAATAATGTTAAAGAGGgttgaaaattaatttgaacAT
GCCTAAACAAACATGAAATCCAAAACAAATTATATCTTCGTATTGATTTA
TACAGTGGCGAATATTTGTTTTACTTTTGGTCATGAATTCAATTCACAAC
TTGTCTATCATGGACACAAAGAAATCGGAGGTAAAAAAATCCAACTTAAA
TTATTATAAATCTGgaagaaaattgttttaaaatttaaaacattcaCCCC
AAAGCGTCCAGTTAGGGAAATGGTTATGTTCGAACCATGGATTCATCCGG
GGAGGGGTTCagttaggctacgtcatatcttccttcgtttcgagcgtaaa
actcctaccaTAGAcaaagagtaaggcctaaaagcctggagctgtctatt
gtgtagactagggTTCACTTAATCATCGTAAAATTAGTTGTCCTTTTTTA
TATATATCTGACAAGGTTCCTTTCCTTTTCACATCCTTGAAAGTCCCTTA
AAGGGGTACAAAACCATAGGTATAAAACAAGCCTAGTTAAAAATTGTGAA
GATTTACCTTTACTCATCTAAAACTTAGGTTTGATAATTTTAGTAAATTA
GTCACCCTTAAATGTCGCAAAGCATCAAAAGTAggataacatttttaaaa
ttgagatTCTCTCTATGCTATGGGTCAACTTTTGAACTTACGAGTATTTC
ACATACCAAAAAGCTGCTTCCTTAGCTCTAAATACCCCCTGTGTCACAgg
cccgctgggaccccagccccactaaAACATTTGGCAACAatctcgtcccc
ggtgggaagaatatcctgaaatttcagccccaccgggaaattgactttga
tttcatccccatttgaaattcaatgtttaaaaattgcactccaaaaccat
ccccactagattttttaaccttggaacaataggatttctatccccattgg
aatttcaataggaatttttatccccaccgaggttaaaaagttccaccggg
gctgtgagataggggtgtcTAAATTCGTCTTTAATTTAACTTACGCTTTA
GATGTAAACGTTTCGTACTCGTACGTTAACGTAGTACCGCACGTTGGTTA
CGAACTTCAGTTAACAACAGACTTCATTGCGAAGGAAATCAATGTTAATA
ATGGCCCTGGATGTGCAGCCAACTGCAGTCAATCAGAAAGTTGCGCCAGT
GCAAACTTTTATGGAGATACCAATACTTGTCAAGTTTTGTTGTCAGATCG
TTTCACCCATTACAACTAGCaattagctgtcgctatgaatgccccgctga
tagcagatattagcccagaggaatttagccatgaagagagcaagggaatc
ataatcagactGT Coding sequence (CDS) from alignment at sc0000133:195565..196927+ >TCONS_00011830 ID=TCONS_00011830|Name=TCONS_00011830|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at sc0000133:195565..196927+ (Clytia hemisphaerica)
ATGAAATCCAAAACAAATTATATCTTCGTATTGATTTATACAGTGGCGAA
TATTTGTTTTACTTTTGGTCATGAATTCAATTCACAACTTGTCTATCATG
GACACAAAGAAATCGGAGATGTAAACGTTTCGTACTCGTACGTTAACGTA
GTACCGCACGTTGGTTACGAACTTCAGTTAACAACAGACTTCATTGCGAA
GGAAATCAATGTTAATAATGGCCCTGGATGTGCAGCCAACTGCAGTCAAT
CAGAAAGTTGCGCCAGTGCAAACTTTTATGGAGATACCAATACTTGTCAA
GTTTTGTTGTCAGATCGTTTCACCCATTACAACTAGATGAAATCCAAAAC
AAATTATATCTTCGTATTGATTTATACAGTGGCGAATATTTGTTTTACTT
TTGGTCATGAATTCAATTCACAACTTGTCTATCATGGACACAAAGAAATC
GGAGATGTAAACGTTTCGTACTCGTACGTTAACGTAGTACCGCACGTTGG
TTACGAACTTCAGTTAACAACAGACTTCATTGCGAAGGAAATCAATGTTA
ATAATGGCCCTGGATGTGCAGCCAACTGCAGTCAATCAGAAAGTTGCGCC
AGTGCAAACTTTTATGGAGATACCAATACTTGTCAAGTTTTGTTGTCAGA
TCGTTTCACCCATTACAACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011830-exon-sc0000133-1491911889:195565..195744 | TCONS_00011830-exon-sc0000133-1491911889:195565..195744 | Clytia hemisphaerica | exon |
| TCONS_00011830-exon-sc0000133-1510915933:195565..195744 | TCONS_00011830-exon-sc0000133-1510915933:195565..195744 | Clytia hemisphaerica | exon |
| TCONS_00011830-exon-sc0000133-1575043694:195565..195744 | TCONS_00011830-exon-sc0000133-1575043694:195565..195744 | Clytia hemisphaerica | exon |
| TCONS_00011830-exon-sc0000133-1491911889:196616..196927 | TCONS_00011830-exon-sc0000133-1491911889:196616..196927 | Clytia hemisphaerica | exon |
| TCONS_00011830-exon-sc0000133-1510915933:196616..196927 | TCONS_00011830-exon-sc0000133-1510915933:196616..196927 | Clytia hemisphaerica | exon |
| TCONS_00011830-exon-sc0000133-1575043694:196616..196927 | TCONS_00011830-exon-sc0000133-1575043694:196616..196927 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000133 | supercontig | sc0000133:195565..196927 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003609 | Pan_app |
Blast
The following BLAST results are available for this feature:
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