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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011835 ID=TCONS_00011835|Name=TCONS_00011835|organism=Clytia hemisphaerica|type=transcript|length=3438bpRun BLAST on NCBI protein sequence of TCONS_00011835-protein >TCONS_00011835-protein ID=TCONS_00011835-protein|Name=TCONS_00011835-protein|organism=Clytia hemisphaerica|type=polypeptide|length=680bp MGLLSVGTPLAWKDTKKLAEYVKKHGIVQFINLYRKLKNRQRDTLKWGDERun BLAST on NCBI transcript from alignment at sc0000133:224629..259579+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011835 ID=TCONS_00011835|Name=TCONS_00011835|organism=Clytia hemisphaerica|type=transcript|length=34951bp|location=Sequence derived from alignment at sc0000133:224629..259579+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000133:224629..259579+ >TCONS_00011835 ID=TCONS_00011835|Name=TCONS_00011835|organism=Clytia hemisphaerica|type=CDS|length=2043bp|location=Sequence derived from alignment at sc0000133:224629..259579+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011835 vs. Swiss-Prot (Human)
Match: GSH1 (Glutamate--cysteine ligase catalytic subunit OS=Homo sapiens GN=GCLC PE=1 SV=2) HSP 1 Score: 731.095 bits (1886), Expect = 0.000e+0 Identity = 356/625 (56.96%), Postives = 453/625 (72.48%), Query Frame = 3
Query: 171 MGLLSVGTPLAWKDTKKLAEYVKKHGIVQFINLYRKLKNRQRDTLKWGDEIEYTLVYLDHEKKAARLLLKCNEYLPELQED-ENNNPGKNTSAWRMEYANYMIEGTPGQPFGGCLTQFNRVEKSMKSRREELERMIQRPNEAIICFASFPRIGCPDFTEPTYEVSPELNPASNSLYYPDAAVYPDHPRFLTLTKNIRSRRGGRQAINIPVFRDEKTPEPFLPATPNDDGQAAKGMKPDHVYMDAMGFGMGCSCLQVTFQACNIDEARLLYDQLAGLGPIMMALSAASPAFQGTLADVDCRWDVIAGSVDDRTPGERGTGPLQEGERLIPKSRYDCIDMYISPCSKDFNDRPILYDKEHKQMLLDEGLDDVLAEHIAHLFIRDPISLFAEKLDLNDEVEVDHFENIQSTNWQSVRFKPPPPNSQIGWRVEFRTIEVQLTDFENAAYVVFVVLLTRVILSYNLNLLIPISKVEENMRRAVKRDAVLNEKFFFR---------------SALNCNKNADEPVEEMSIDEIINGKDGGFPGLISLMKSYIKSMDVDVDTVCTITQYLNLISKRASGELKTPANWMRNFIVNHETYKCDSEVNERIMYDLAVKCDSISRELVGCPELFGN 1997
MGLLS G+PL+W++TK+ A++V++HGI+QF+++Y +K+R +D LKWGDE+EY LV DHE K RL+L + L LQE E NP T WR EY +YMIEGTPGQP+GG +++FN VE +M+ RR+E +++ N+A+ SFPR+GCP FT P + +P AS SL++PD A+ HPRF TLT+NIR RRG + IN+P+F+D+ TP PF+ DD +A++ KPDH+YMDAMGFGMG CLQVTFQAC+I EAR LYDQLA + PI+MALSAASP ++G ++D+DCRW VI+ SVDDRT ERG PL+ I KSRYD ID Y+S C + +ND + DKE + LL EG+D +LA+H+AHLFIRDP++LF EK+ L+D E DHFENIQSTNWQ++RFKPPPPNS IGWRVEFR +EVQLTDFEN+AYVVFVVLLTRVILSY L+ LIP+SKV+ENM+ A KRDAVL F+FR A N + A E MSID IINGK+G FPGLI ++ SY+++M+VDVDT C+I YL LI KRASGEL T A WMR FI NH YK DS + + + Y L +KC+ I+ EL CPEL G+
Sbjct: 1 MGLLSQGSPLSWEETKRHADHVRRHGILQFLHIYHAVKDRHKDVLKWGDEVEYMLVSFDHENKKVRLVLSGEKVLETLQEKGERTNPNHPT-LWRPEYGSYMIEGTPGQPYGGTMSEFNTVEANMRKRRKEATSILEE-NQALCTITSFPRLGCPGFTLPEVKPNPVEGGASKSLFFPDEAI-NKHPRFSTLTRNIRHRRGEKVVINVPIFKDKNTPSPFIETFTEDD-EASRASKPDHIYMDAMGFGMGNCCLQVTFQACSISEARYLYDQLATICPIVMALSAASPFYRGYVSDIDCRWGVISASVDDRTREERGLEPLKNNNYRISKSRYDSIDSYLSKCGEKYNDIDLTIDKEIYEQLLQEGIDHLLAQHVAHLFIRDPLTLFEEKIHLDDANESDHFENIQSTNWQTMRFKPPPPNSDIGWRVEFRPMEVQLTDFENSAYVVFVVLLTRVILSYKLDFLIPLSKVDENMKVAQKRDAVLQGMFYFRKDICKGGNAVVDGCGKAQNSTELAAEEYTLMSIDTIINGKEGVFPGLIPILNSYLENMEVDVDTRCSILNYLKLIKKRASGELMTVARWMREFIANHPDYKQDSVITDEMNYSLILKCNQIANELCECPELLGS 621 The following BLAST results are available for this feature:
BLAST of TCONS_00011835 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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