|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011836 ID=TCONS_00011836|Name=TCONS_00011836|organism=Clytia hemisphaerica|type=transcript|length=748bp
CTGAGTATTTCCACCAAAAAGTCCTCCTCCTTGGCTAGGCTGCTTATTCT
GTGAGAACAAACCTCCACCAGACGTGCTATTTGAGAACAGCCCTCCACCA
CTGGTCTGATTATTCGGTGCTGAGTTCCCGAAAATTCCTCCACCGCTGGG
CTGATTATTTGTAGATGAACTACCAAAAAGCCCTCCGCCATTGTTCGTAT
TAGACGAAAATAGCCCTCCTCCGGACAATTGTTGTTGATTCGTCGAAGTT
CCGAATAATCCACCACCCGTATTAGAAGCGGTATTATTACTAAAAAGTCC
TTTTCCGGCGTTAGTACCggtattatttgaaaataatccTCCACCACTTC
CGGTGCTGCTACTAAAAAGTCCGCCACCGGTATTCTTTTGTTGTTGTGCG
TTTGAAGCGAATGGGTTCGGTAAACCACCGCTTTGAGTGTTGCTGCTTCC
GAATAAACCACCACCTGAGGGTTTGCTAACGAACGCACTATTTGATTGGT
TGCCACTACCGCCGAATAATGAAGTCCCTGAATTTTGATTGTTAGATGAG
CTTCCGAATAACGAGGGTTTGTTTGTATTTGAACTGAACAAACCACCACC
ACTGGGTTTGTTATTTGCGGTGTTTCCGAATAAGCCGCCCCCGCCCGAGG
CGGCTTGTGAACTTGAGGTGAAAGGGTTATTCGAtgtgtttgttttgttt
gtcgATGCCAAATTACTCGCATTGTTGATTTCTTGAAGCTGAAAAAAG Run BLAST on NCBI transcript from alignment at sc0000133:262714..263568+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011836 ID=TCONS_00011836|Name=TCONS_00011836|organism=Clytia hemisphaerica|type=transcript|length=855bp|location=Sequence derived from alignment at sc0000133:262714..263568+ (Clytia hemisphaerica)
CTGAGTATTTCCACCAAAAAGTCCTCCTCCTTGGCTAGGCTGCTTATTCT
GTGAGAACAAACCTCCACCAGACGTGCTATTTGAGAACAGCCCTCCACCA
CTGGTCTGATTATTCGGTGCTGAGTTCCCGAAAATTCCTCCACCGCTGGG
CTGATTATTTGTAGATGAACTACCAAAAAGCCCTCCGCCATTGTTCGTAT
TAGACGAAAATAGCCCTCCTCCGGACAATTGTTGTTGATTCGTCGAAGTT
CCGAATAATCCACCACCCGTATTAGAAGCGGTATTATTACTAAAAAGTCC
TTTTCCGGCGTTAGTACCggtattatttgaaaataatccTCCACCACTTC
CGGTGCTGCTACTAAAAAGTCCGCCACCGGTATTCTTTTGTTGTTGTGCG
TTTGAAGCGAATGGGTTCGGTAAACCACCGCTTTGAGTGTTGCTGCTTCC
GAATAAACCACCACCTGAGGGTTTGCTAACGAACGCACTATTTGATTGGT
TGCCACTACCGCCGAATAATGAAGTCCCTGAATTTTGATTGTTAGATGAG
CTTCCGAATAACGAGGGTTTGTTTGTATTTGAACTGAACAAACCACCACC
ACTGGGTTTGTTATTTGCGGTGTTTCCGAATAAGCCGCCCCCGCCCGAGG
CGGCTTGTGAACTTGAGGCNAGGGTTTGTTTGTATTTGAACTGAACAAAC
CACCACCACTGGGTTTGTTATTTGCGGCGTTTCCGAATAAGCCGCCCCCG
CCCGTGGCAGCTTGTGAACTTGAGGTGAAAGGGTTATTCGAtgtgtttgt
tttgtttgtcgATGCCAAATTACTCGCATTGTTGATTTCTTGAAGCTGAA
AAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011836-exon-sc0000133-1491911889:262714..263380 | TCONS_00011836-exon-sc0000133-1491911889:262714..263380 | Clytia hemisphaerica | exon |
| TCONS_00011836-exon-sc0000133-1510915933:262714..263380 | TCONS_00011836-exon-sc0000133-1510915933:262714..263380 | Clytia hemisphaerica | exon |
| TCONS_00011836-exon-sc0000133-1575043694:262714..263380 | TCONS_00011836-exon-sc0000133-1575043694:262714..263380 | Clytia hemisphaerica | exon |
| TCONS_00011836-exon-sc0000133-1491911889:263488..263568 | TCONS_00011836-exon-sc0000133-1491911889:263488..263568 | Clytia hemisphaerica | exon |
| TCONS_00011836-exon-sc0000133-1510915933:263488..263568 | TCONS_00011836-exon-sc0000133-1510915933:263488..263568 | Clytia hemisphaerica | exon |
| TCONS_00011836-exon-sc0000133-1575043694:263488..263568 | TCONS_00011836-exon-sc0000133-1575043694:263488..263568 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000133 | supercontig | sc0000133:262714..263568 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025574 | Nucleoporin_FG_rpt |
Blast
The following BLAST results are available for this feature:
|
