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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011840 ID=TCONS_00011840|Name=TCONS_00011840|organism=Clytia hemisphaerica|type=transcript|length=932bp
AAATACACAAAATATTAATGAATTATTGATTCAAATATGGTGACATTTAC
TATAAAAATATGAGATTTTAATAATTtacgaaaaaagtgaaaaatatttt
gtacaaaataatttttattttcatatttgacATTGCTTTTTTTGTCAGAA
GCAATTTTCAATTGGATCAAAAGGACCAGACTAGGGACATTCATCCAGAT
TTGAAATTCATCTCTCATCACAACAAACAAACCAATCAAAGAAGATGCAG
AAATTCACTCTATGTTTATTGGCGTTAATTGCCGTTGCTACCCTTTACGT
AAACGGTAGTGTCGTACAAGAACCTAAACCGGAAGAAGAACCCGATTACG
CCGGGCGTTACCGACGGGCNAGTGTCGTACAAGAACCTAAACCGGAAGAA
GAACCCGATTACGCCGGACGTTACCGACGGGCGAACGGGGAACCAGAAAA
TGAACCCGAACATGAAACAAACAAGAAAAACCCGGCAACAGTTATCACCC
AAAGTGTAACGCTGGTTGGAATGGTTGGTCTTGCTACTgccaaatatttg
ttttgagaaaacaaaTTAAAGTCGAgcatttgtttatgttttaatAAGGT
TTCTGACTATTTGATATGTATAATAAATGCATGCTCTAGTTTTGGCATGT
TTTTTTTGCAGCAACATTCTTCTTGTTGTTGGTATAACATTATATTGTTT
TTGAActcaaaacaaacattttttgttACTTTATCTTAAACCTTTGTTGT
AAACTCAATGTAATTAATTACTTGTATATAATTCATTTGTACCTGAAATA
TCTGTTTGATTCATTCCACAAATTTGAATtcatctaaagtctattcacga
taagtgtgcactcttttttcatttacctataacttttgaaggaattcttc
aatctttataaatttggtatcattggaaagat Run BLAST on NCBI protein sequence of TCONS_00011840-protein >TCONS_00011840-protein ID=TCONS_00011840-protein|Name=TCONS_00011840-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MQKFTLCLLALIAVATLYVNGSVVQEPKPEEEPDYAGRYRRXSVVQEPKP
EEEPDYAGRYRRANGEPENEPEHETNKKNPATVITQSVTLVGMVGLATAK
YLF Run BLAST on NCBI transcript from alignment at sc0000133:455992..457326+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011840 ID=TCONS_00011840|Name=TCONS_00011840|organism=Clytia hemisphaerica|type=transcript|length=1335bp|location=Sequence derived from alignment at sc0000133:455992..457326+ (Clytia hemisphaerica)
AAATACACAAAATATTAATGAATTATTGATTCAAATATGGTGACATTTAC
TATAAAAATATGAGATTTTAATAATTtacgaaaaaagtgaaaaatatttt
gtacaaaataatttttattttcatatttgacATTGCTTTTTTTGTCAGAA
GCAATTTTCAATTGGATCAAAAGGTAAGTTTCCAGACAGAATTCCAAGTC
TGAAATTTTACAGTCAATTTAAATTTATTGAAGTTAAAAAATATTTGCtc
ctttgaaaaaaataccatatgaatttacttcaaattgtaaatattcaatt
caagattcaagataaaaaatattaatgatattttctgagatttttatatt
gattttcaaCTTCGAATCAGACTGAGCTATATTTTTAGTcattgtttctt
tctttttcattaaGAAGAAGGCCTAAATAGTTTTCTCCACTGATTAACAT
ATTAACTATATATAAATTATTAGATTAACGAGAAAAGGAGTAAAGATGGA
ATTTATTAGTTTCTAATCGTGAAAttattcatttggaaatgaaattatTT
GATTTGTGAAATCTTTCTCATTTCAGGACCAGACTAGGGACATTCATCCA
GATTTGAAATTCATCTCTCATCACAACAAACAAACCAATCAAAGAAGATG
CAGAAATTCACTCTATGTTTATTGGCGTTAATTGCCGTTGCTACCCTTTA
CGTAAACGGTAGTGTCGTACAAGAACCTAAACCGGAAGAAGAACCCGATT
ACGCCGGGCGTTACCGACGGGCNAGTGTCGTACAAGAACCTAAACCGGAA
GAAGAACCCGATTACGCCGGACGTTACCGACGGGCGAACGGGGAACCAGA
AAATGAACCCGAACATGAAACAAACAAGAAAAACCCGGCAACAGTTATCA
CCCAAAGTGTAACGCTGGTTGGAATGGTTGGTCTTGCTACTgccaaatat
ttgttttgagaaaacaaaTTAAAGTCGAgcatttgtttatgttttaatAA
GGTTTCTGACTATTTGATATGTATAATAAATGCATGCTCTAGTTTTGGCA
TGTTTTTTTTGCAGCAACATTCTTCTTGTTGTTGGTATAACATTATATTG
TTTTTGAActcaaaacaaacattttttgttACTTTATCTTAAACCTTTGT
TGTAAACTCAATGTAATTAATTACTTGTATATAATTCATTTGTACCTGAA
ATATCTGTTTGATTCATTCCACAAATTTGAATtcatctaaagtctattca
cgataagtgtgcactcttttttcatttacctataacttttgaaggaattc
ttcaatctttataaatttggtatcattggaaagat Coding sequence (CDS) from alignment at sc0000133:455992..457326+ >TCONS_00011840 ID=TCONS_00011840|Name=TCONS_00011840|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0000133:455992..457326+ (Clytia hemisphaerica)
ATGCAGAAATTCACTCTATGTTTATTGGCGTTAATTGCCGTTGCTACCCT
TTACGTAAACGGTAGTGTCGTACAAGAACCTAAACCGGAAGAAGAACCCG
ATTACGCCGGGCGTTACCGACGGGCNAGTGTCGTACAAGAACCTAAACCG
GAAGAAGAACCCGATTACGCCGGACGTTACCGACGGGCGAACGGGGAACC
AGAAAATGAACCCGAACATGAAACAAACAAGAAAAACCCGGCAACAGTTA
TCACCCAAAGTGTAACGCTGGTTGGAATGGTTGGTCTTGCTACTgccaaa
tatttgttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011840-exon-sc0000133-1491911889:455992..456164 | TCONS_00011840-exon-sc0000133-1491911889:455992..456164 | Clytia hemisphaerica | exon |
| TCONS_00011840-exon-sc0000133-1510915933:455992..456164 | TCONS_00011840-exon-sc0000133-1510915933:455992..456164 | Clytia hemisphaerica | exon |
| TCONS_00011840-exon-sc0000133-1575043694:455992..456164 | TCONS_00011840-exon-sc0000133-1575043694:455992..456164 | Clytia hemisphaerica | exon |
| TCONS_00011840-exon-sc0000133-1491911889:456568..457326 | TCONS_00011840-exon-sc0000133-1491911889:456568..457326 | Clytia hemisphaerica | exon |
| TCONS_00011840-exon-sc0000133-1510915933:456568..457326 | TCONS_00011840-exon-sc0000133-1510915933:456568..457326 | Clytia hemisphaerica | exon |
| TCONS_00011840-exon-sc0000133-1575043694:456568..457326 | TCONS_00011840-exon-sc0000133-1575043694:456568..457326 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000133 | supercontig | sc0000133:455992..457326 + |
Blast
The following BLAST results are available for this feature:
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