TCONS_00011841 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011841
Unique NameTCONS_00011841
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length245

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011841 ID=TCONS_00011841|Name=TCONS_00011841|organism=Clytia hemisphaerica|type=transcript|length=245bp
TTTTTGTTGTCTGACTTTATCAATGCATCCACAACAGAATCGATGTCCAC
ACGGAACAGCTTGATGGGGTTCTCTTAATATAAACAAACAGATGACACAT
GTCATATCATTTGTATCCAGTTGTTCGTCAGCAAACGTCACATCATAACC
TTCATCACTGTTGGTCAGGTGTTGTTGCTGATGATAAAGGTCTTCCAAAG
TTGACTCTTCTGGAAATCTTGCAGCCATTTTTGACTATGTTTGAC
Run BLAST on NCBI

transcript from alignment at sc0000133:523865..524169+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011841 ID=TCONS_00011841|Name=TCONS_00011841|organism=Clytia hemisphaerica|type=transcript|length=305bp|location=Sequence derived from alignment at sc0000133:523865..524169+ (Clytia hemisphaerica)
TTTTTGTTGTCTGACTTTATCAATGCATCCACAACAGAATCGATGTCCAC
ACGGAACAGCTTGATGGGGTTCTCTTAATATAAACAAACAGATGACACAT
GTCATATCATTTGTATCCAGTTGTTCGTCAGCAAACGTCACATCATAACC
TTCATCACTGTTGGTCAGGTGTTGTTGCTGATGATAAAGGTCTTCCAAAG
TTGATTCTTCTGGAAATCTTGCNGTCAGGTGTTGTTGCTGATGATAAAGG
TCTTCCAAAGTTGACTCTTCTGGAAATCTTGCAGCCATTTTTGACTATGT
TTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006653XLOC_006653Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011841-exon-sc0000133-1491911889:523865..524032TCONS_00011841-exon-sc0000133-1491911889:523865..524032Clytia hemisphaericaexon
TCONS_00011841-exon-sc0000133-1510915933:523865..524032TCONS_00011841-exon-sc0000133-1510915933:523865..524032Clytia hemisphaericaexon
TCONS_00011841-exon-sc0000133-1575043694:523865..524032TCONS_00011841-exon-sc0000133-1575043694:523865..524032Clytia hemisphaericaexon
TCONS_00011841-exon-sc0000133-1491911889:524093..524169TCONS_00011841-exon-sc0000133-1491911889:524093..524169Clytia hemisphaericaexon
TCONS_00011841-exon-sc0000133-1510915933:524093..524169TCONS_00011841-exon-sc0000133-1510915933:524093..524169Clytia hemisphaericaexon
TCONS_00011841-exon-sc0000133-1575043694:524093..524169TCONS_00011841-exon-sc0000133-1575043694:524093..524169Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000133supercontigsc0000133:523865..524169 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	3.15922	2.27036	0.786853	0	1.4983	0	0	0	0	2.41394	0	0	0	0	0	0	0	0	0	1.47261	0	0	0.270612	0	0	0	2.02784	2.27197	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011841 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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